CSPI06G02200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G02200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein
Location	Chr6 : 1628894 .. 1631301 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTGAATCGTCTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAGGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGGTCATTCAGGTTTTCACCTTTTCTAAATCCTTTGATCTATACATACTTTTGTTTCTGATTTCCACAGATTTATGAAGTGAATCTTTTGACTTCCTGTGTTGAATTAAAGGATGCATCGATTTTCTTGAGAATTGATTCTTGTTTCTGCTTTATTACCCTTGCCACCTTAATGGTTTCTATTTCAAGTTTTGGACGACCTACTTTGGCGTATTCGGATCTCTATTTTTTCTCCTGCCTTGATATAGTGATTACACAGTTGAGATCTGAAAGAAATTTATTCCTTTTGAATTATGGTGTCTACGAACATACGTATTCCCCGTTGACGAGGAGCCTAGATATTCATTTCAGTTCTCTTTTACTATTATCATCTTTTTGGTTGTTGATCGAGCACAAAATGATACTCTTGCCCATCTTTGGAAGATAACTGGTAGAACTCTTGAAATATTAAAACATGGAGTGTAATAATTATTTTCTCACTCTATATTTGTTTTGAACGAAGGACACAATTCTACAACCTTTAGAACAGTTCTTGTTCAAGTTATCTTTATTTATATGCAGCACCATGTTAGACATTGAATCTCACAGGTTTCTAAAAAGTTGTAGTAGTTCATTATATGTGGCTCCATGTCCTGCCGTCCTCATGATCACAACTCTGGTTCCACATTGTAAGTTTTGTTTACTTCCGATTCCAATCCAAGTTCAGCTTTCAGTGTTATGGAGCTTTTATCCATCAAAACCCTACCTCAGCAGAAGTTTTGACCCTCTATCCTTGTTATTTCTACACTCTTTTCCAAGTTCCGTAATTTTATCGATATAGACGGCTTCATTTGTTGGATTTAAACCATTAGTGAACTTTCTAACTGTACCTGCTGCAAAATTTCCATCGAAGACACTGCCAACCAAAATCTTAATCTAACTTCCATCAATATTCTTAAACAGTCCTGGGGTATGGTAAAAAACTTTGTTGTTTGCACCTTCTACCCAAGATTCTGTCCGTTAGTCCACTGAACAAGGTGAGAGGCTTTCCACAAAAGTTCACAAGTGATGTCTTGAACTCCTAGGTTCCGGCATTCATTTTGCAGTGAAATATTGTTCTGCTCTAAACGTATTCTCCTCTCAATTGCTACTTTTTATTGAAAGACCTCTCACAATGTTGGTTGTTTCTTTCTAGAACAAGCCACTCCACTGATTGACGACCACACTTGGATTCTACTACTGCAAAACTCAAAATCGATTTCCCTTCCATCGCCCCAATCACATGTTTCGTGCACTTCTTTCTAGGAATCCCCAAGATTGAAGTGCTCCAATGTCACAGCTTATATATCCCTTGTCATTTTATTTAACCAATTTGATTGTGATGGTATGGGGTTTTATTAGCTCAGCCCTCTTTCTCTGCTTCTCATATTCTCTTTCTACATGCTTTGTAAATGTCCCCAACTCTTCTTCCTTAACTAACGGCAATTACATCATTTCCTCTCTTTTTCTACTGATTAGGATCACCTGTTTTTTTCTTGTTTTCCCAACTAAACCATAATGGACTTGTGTTCTTTGCTATGTGTTTCTTGCAAATTATTGATTGGGAAAAACTGTTACTTTTTCGCCATCTACAAGTTTTTGGGTTCCAGATGTGCTCCATTACCTCTGATAAGGAGAATGCATTATCCTATCTTGGCTGGGTTTTTATACATTGTTATTTTTGTAAATTTTTCTACAAATAAATGGATAGAGATTTGATCCTACAACCGACATATAAGAATGCAAGTAGAGTCTGTATGATCGCATCTTTCAGCTTACCGCTTAGTGGGGATTGATCGAGCAGACTCTTACCTTGATCACTTGCTATGCTTATGTTGGTTAAGGTTAACTTTCAGTACTTCTGGTCTTTTTACTATGACTTTTTGTATCCAATATAAGATGCTTAACCTCTATAACCCCGAAAATGCTCTCTGCCTTGTAGTAGAAAAAAATTAATTATGTACATTTCCCCTTAATGTTTGGTGAGGCTGCAAACCAACCTAAATTGTTTGAGTTGTTAAAGTATCATTGCTTGCCTAAACAGTTTGTTCCGATTAATGTTTGTTCCAATTAATTTTGTACTATATGCTTGAAATGTTACTAGTAACTATACTTGTAGAAAATGAACTGTATATGGTCTTTCCTCTTTTTGAGGCACCTCTGTGGTGCATTAATAGGATGTTTAAACGAATCTAATGACTTATTTTTCTCTTTTGGACTCTTTGCAGCCATTTGACTGGATCAAGAAAACGTTCTTCGAGAAGCCACAAGAGAAATGA

mRNA sequence

ATGGCAGGTGAATCGTCTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAGGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGGTCATTCAGCCATTTGACTGGATCAAGAAAACGTTCTTCGAGAAGCCACAAGAGAAATGA

Coding sequence (CDS)

ATGGCAGGTGAATCGTCTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAGGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGGTCATTCAGCCATTTGACTGGATCAAGAAAACGTTCTTCGAGAAGCCACAAGAGAAATGA

Homology

[Close]

BLAST of CSPI06G02200 vs. Swiss-Prot
Match: UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 8.8e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 2  AGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQEK 58
          A  + LFKFL P  R QSTDIQAAAGWGVAA T ALWVIQP+D+++KTF EK +E+
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEEE 61

[Close]

BLAST of CSPI06G02200 vs. TrEMBL
Match: A9PAG4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08760g PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.5e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEK 54
          MAGE+++FKFLSP  R QSTDIQ AA WGVAA TTALW++QPFDWIKKTFFEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]

BLAST of CSPI06G02200 vs. TrEMBL
Match: A0A0D2SX41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQEK 58
          MAGE +LFKFL PG+R Q  D+QAAA WGVAA T ALW+IQPFDW+KKTF EKP+ +
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPESE 57

[Close]

BLAST of CSPI06G02200 vs. TrEMBL
Match: A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-16
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQ 56
          MAGE S+FKFL P  R Q  DIQAAA WGVAA TTALW+IQPFDW+KKTF EKP+
Sbjct: 1  MAGEGSMFKFLKPRLRPQPIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPE 55

[Close]

BLAST of CSPI06G02200 vs. TrEMBL
Match: A0A0A0K7V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014600 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIK 48
          MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQ F + K
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 47

[Close]

BLAST of CSPI06G02200 vs. TrEMBL
Match: A0A067JNR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03306 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-15
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQE 57
          MAGE+++FKFL P  R Q TDIQAAA WGVAA TTALW+IQPF+WIKKTF EK  E
Sbjct: 1  MAGETAVFKFLKPRLRPQITDIQAAAFWGVAATTTALWIIQPFNWIKKTFIEKEPE 56

[Close]

BLAST of CSPI06G02200 vs. TAIR10
Match: AT2G40765.1 (AT2G40765.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKP 55
          MAG S L   + P  + Q+ DIQAAAGWG+AAA  A+WV+QPF WIKKTF + P
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPP 52

[Close]

BLAST of CSPI06G02200 vs. NCBI nr
Match: gi|224145008|ref|XP_002325493.1| (hypothetical protein POPTR_0019s08760g [Populus trichocarpa])

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEK 54
          MAGE+++FKFLSP  R QSTDIQ AA WGVAA TTALW++QPFDWIKKTFFEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]

BLAST of CSPI06G02200 vs. NCBI nr
Match: gi|763800998|gb|KJB67953.1| (hypothetical protein B456_010G219300 [Gossypium raimondii])

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQEK 58
          MAGE +LFKFL PG+R Q  D+QAAA WGVAA T ALW+IQPFDW+KKTF EKP+ +
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPESE 57

[Close]

BLAST of CSPI06G02200 vs. NCBI nr
Match: gi|763811731|gb|KJB78583.1| (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQ 56
          MAGE S+FKFL P  R Q  DIQAAA WGVAA TTALW+IQPFDW+KKTF EKP+
Sbjct: 1  MAGEGSMFKFLKPRLRPQPIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPE 55

[Close]

BLAST of CSPI06G02200 vs. NCBI nr
Match: gi|643704783|gb|KDP21635.1| (hypothetical protein JCGZ_03306 [Jatropha curcas])

HSP 1 Score: 87.8 bits (216), Expect = 6.7e-15
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIKKTFFEKPQE 57
          MAGE+++FKFL P  R Q TDIQAAA WGVAA TTALW+IQPF+WIKKTF EK  E
Sbjct: 1  MAGETAVFKFLKPRLRPQITDIQAAAFWGVAATTTALWIIQPFNWIKKTFIEKEPE 56

[Close]

BLAST of CSPI06G02200 vs. NCBI nr
Match: gi|700190636|gb|KGN45840.1| (hypothetical protein Csa_6G014600 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 6.7e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQPFDWIK 48
          MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQ F + K
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 47

The following BLAST results are available for this feature:

BLAST of CSPI06G02200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UCR11_SOLTU	8.8e-15	67.86	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE...	[more]

BLAST of CSPI06G02200 vs. TrEMBL


Match Name	E-value	Identity	Description
A9PAG4_POPTR	8.5e-17	79.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08760g PE=2 SV=1	[more]
A0A0D2SX41_GOSRA	1.9e-16	70.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1	[more]
A0A0D2TST9_GOSRA	7.2e-16	74.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1	[more]
A0A0A0K7V0_CUCSA	4.7e-15	91.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014600 PE=4 SV=1	[more]
A0A067JNR0_JATCU	4.7e-15	73.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03306 PE=4 SV=1	[more]

BLAST of CSPI06G02200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40765.1	3.0e-13	59.26	unknown protein	[more]

BLAST of CSPI06G02200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|224145008\|ref\|XP_002325493.1\|	1.2e-16	79.25	hypothetical protein POPTR_0019s08760g [Populus trichocarpa]	[more]
gi\|763800998\|gb\|KJB67953.1\|	2.7e-16	70.18	hypothetical protein B456_010G219300 [Gossypium raimondii]	[more]
gi\|763811731\|gb\|KJB78583.1\|	1.0e-15	74.55	hypothetical protein B456_013G008400 [Gossypium raimondii]	[more]
gi\|643704783\|gb\|KDP21635.1\|	6.7e-15	73.21	hypothetical protein JCGZ_03306 [Jatropha curcas]	[more]
gi\|700190636\|gb\|KGN45840.1\|	6.7e-15	91.49	hypothetical protein Csa_6G014600 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02200.1	CSPI06G02200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G02200	CsaV3_5G011100	Cucumber (Chinese Long) v3	cpicucB357
CSPI06G02200	CsaV3_6G002350	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G02200	Cla97C11G212570	Watermelon (97103) v2	cpiwmbB447
CSPI06G02200	CmaCh15G001710	Cucurbita maxima (Rimu)	cmacpiB314
CSPI06G02200	Carg02161	Silver-seed gourd	carcpiB0301
CSPI06G02200	Carg00159	Silver-seed gourd	carcpiB0709

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G02200	Cucurbita maxima (Rimu)	cmacpiB777
CSPI06G02200	Cucurbita moschata (Rifu)	cmocpiB305
CSPI06G02200	Cucurbita moschata (Rifu)	cmocpiB768
CSPI06G02200	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G02200	Melon (DHL92) v3.5.1	cpimeB476
CSPI06G02200	Watermelon (Charleston Gray)	cpiwcgB450
CSPI06G02200	Watermelon (97103) v1	cpiwmB553
CSPI06G02200	Cucurbita pepo (Zucchini)	cpecpiB199
CSPI06G02200	Cucurbita pepo (Zucchini)	cpecpiB461
CSPI06G02200	Bottle gourd (USVL1VR-Ls)	cpilsiB451
CSPI06G02200	Melon (DHL92) v3.6.1	cpimedB464
CSPI06G02200	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G02200	Silver-seed gourd	carcpiB0024
CSPI06G02200	Wax gourd	cpiwgoB583
CSPI06G02200	Cucumber (Gy14) v1	cgycpiB491