Cla97C11G212570 (gene) Watermelon (97103) v2

Overview
NameCla97C11G212570
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionubiquinol-cytochrome c reductase complex 6.7 kDa protein
LocationCla97Chr11 : 5909568 .. 5911737 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAAGCCGCTGCCGGCTGGGGTATCGCCGCCGCCACTACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTTCCTAAACTCATCGATCTATACTATTATTTATGGTTTTCGGAGATTTATACAGTGAATCTTTTGACTCTCTATGTTAGATTAAAGGATGCATCGATCTTCTTGAAACTTGATTCCTGATTCTGCTGTCTTACGTATACCGTCTTTATGATTTCTGTTTCTTGTCTTGGACGATTTACCTTGGCGTATTCGGATTTCTATTTTTACTCCAGCGTTAATATAGTGATTACGGGATTAGCTTTCATTTTCAGTTTGTCATTCGCAATAGAGATCTGAAAGAAATAAATTCCTATGGATTATGGTGTCTATGGATATACGTATTCCTCGTTGATTAGGAGCAGAGAGATTTATTTTTATCTGTTTTCTTCTTTTTGGTATGTCATCGAGCACAAGATGATACTCTTGCCCAGTTTTGTATGATAACTAGTAGAATTGTAGAAATATTAAGAGATGTAGTGCACTAAGATTTTTTACACTCTACATATTTCTAGAACTCAAGGATACAACCTTTTGAACAAAGGTAAGGCTATTTAGACATTGAATCTCACAAGTTTCTAAAAATTTGTAGTAGTTCATTATATATGGCTCCACTTCCTGCCGTCCTCATGATCACACTCTGGTTCCACATTGTAAGTTTGTTTTACTTCCAATTCCAATCCAAGTTCAGTTTCAGTATGGAGCTTTTAGCCCCTCACAGAGACCTAAGGCCTTACCTGAGCGAAAGTTTTGATCCTCTACCCTTTCTGTTTATACAGTCTTTTCCAAATTCCATAATTGTATCACTATAGTTGGCTTCATTTGTTAGTTTTAAACCATTAGTTAACTTTCTACCGGTACCTGCTGCAAAATTTCCATCGACGCCACCAACCAAAAGCCTAATCCTAACTGCCATCAATACTCTCAAACAGTCCTGAGATAATGTCAAAAACTTTGTTGTTTGCACTTTTTACCTGAGGTTCCGTCCATCAGGCTTTCCATCAAAACTCACAACTGATATCTTGGAACTCCTAGGATCTGGCATTCATTTTGCAGTGAAGTATTGTTATGCTCAAAACATATCCTCCTCTCATTGCAACTATTTATGGAAAGACCTCTCACAATAGTCAATGTTTCTTTCTAGTACAAGCCACTCCATAGAGTTACGACCACATTGCAATTCTACTATTACCAAATTCGGATTTGATCTCCGTTCTATCAAACACGTTCTTTGCACTTCCTTCAAGGAATCCCCAAAATTGGAGTGCTCTAATGCACAAGCTAATGGATCCCATGTAATTTTATTTAACAAATTTGATTGATGGTATGGGGTTTTATTAGCTCTATTCCTCTTTCTCTGCTCCTCATGTTCTTTTTCTATATGCTTAGTAAACGTTCTCAACTCCCCCTCCTTAACTAACAATAACTACATCGTTGCCTCTCCTTTTCTACTGATTAGGTTCACTGCTGTTTTTTGTTCCTTTCCCAACTAAACCATAATGGACTTGTTTTCTTTGCTGTGTGTTTTTTCCGATTTATTGCTTGAGAAAAACTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATCTACAAATTTTTGGGTTCCAGATGGGCTCCATCACCTTTGATAGGGAGAATGCATTATCCTATCTTGGTTGGGTTTTTATTAATTCTTATTTTGTGAAGTTTTCTGTATTGCATTGCAAATAAAGGGATATAGATTTGATTATGTTCATTTTCCCTGATTGTTTCGCGAGGCTGCAAACCAACGTAAATTGGTTTGAGTTTTCAAATATTCATTTCTTTGCCTAAACAGTTTGTTCCAATTAATTTTGTACTATATGTTATTTTCTTGGTTAACTAAACGGTGGCCTTTTGTGTTATACTTGTAGAAAATTAACTCTATACAATCTTTCCTCTTTTTGAGGCTCCTCTGTGGTTCACATTAATTATAATGTTTAAACGAATCTAACCATTCCTTTTTCTCTTGTGAACTCTGTGCAGCCATTTGACTGGATCAAGAAGACGTTCTTCGAGAAGCCAGAAGAGGCATGA

mRNA sequence

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAAGCCGCTGCCGGCTGGGGTATCGCCGCCGCCACTACTGCTCTGTGGGTCGTTCAGCCATTTGACTGGATCAAGAAGACGTTCTTCGAGAAGCCAGAAGAGGCATGA

Coding sequence (CDS)

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAAGCCGCTGCCGGCTGGGGTATCGCCGCCGCCACTACTGCTCTGTGGGTCGTTCAGCCATTTGACTGGATCAAGAAGACGTTCTTCGAGAAGCCAGAAGAGGCATGA

Protein sequence

MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPEEA
Homology
[Close]
BLAST of Cla97C11G212570 vs. NCBI nr
Match: ABK93367.1 (unknown [Populus trichocarpa] >ABK93644.1 unknown [Populus trichocarpa] >ABK95450.1 unknown [Populus trichocarpa] >ABK96046.1 unknown [Populus trichocarpa] >PNS90741.1 hypothetical protein POPTR_019G059500v3 [Populus trichocarpa])

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEK 54
          MAGE+ +FKFLSP  R QSTDIQ AA WG+AA TTALW+VQPFDWIKKTFFEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]
BLAST of Cla97C11G212570 vs. NCBI nr
Match: KJB67953.1 (hypothetical protein B456_010G219300 [Gossypium raimondii])

HSP 1 Score: 91.7 bits (226), Expect = 8.9e-16
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAGE  LFKFL PG+R Q  D+QAAA WG+AA T ALW++QPFDW+KKTF EKPE
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. NCBI nr
Match: KJB78583.1 (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAGE ++FKFL P  R Q  DIQAAA WG+AA TTALW++QPFDW+KKTF EKPE
Sbjct: 1  MAGEGSMFKFLKPRLRPQPIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. NCBI nr
Match: PLY84939.1 (hypothetical protein LSAT_6X11060 [Lactuca sativa])

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAG S L K + P +R Q+TDIQAAAGWG+ A T A+WVVQPFDW++KTFFEKPE
Sbjct: 1  MAGASNLTKLIKPTKRLQATDIQAAAGWGVVALTGAIWVVQPFDWVRKTFFEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. NCBI nr
Match: PQQ03149.1 (hypothetical protein Pyn_30021 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAGE + F+F+ P  R  +TD+QAAAGWGIAA T ALW+VQPFDW+KKTF EKPE
Sbjct: 1  MAGELSAFRFMKPRHRPHTTDLQAAAGWGIAAVTGALWLVQPFDWLKKTFLEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. TrEMBL
Match: tr|A9PAG4|A9PAG4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500v3 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-16
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEK 54
          MAGE+ +FKFLSP  R QSTDIQ AA WG+AA TTALW+VQPFDWIKKTFFEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]
BLAST of Cla97C11G212570 vs. TrEMBL
Match: tr|A0A0D2SX41|A0A0D2SX41_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-16
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAGE  LFKFL PG+R Q  D+QAAA WG+AA T ALW++QPFDW+KKTF EKPE
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. TrEMBL
Match: tr|A0A0D2TST9|A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAGE ++FKFL P  R Q  DIQAAA WG+AA TTALW++QPFDW+KKTF EKPE
Sbjct: 1  MAGEGSMFKFLKPRLRPQPIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. TrEMBL
Match: tr|A0A2J6LC73|A0A2J6LC73_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X11060 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAG S L K + P +R Q+TDIQAAAGWG+ A T A+WVVQPFDW++KTFFEKPE
Sbjct: 1  MAGASNLTKLIKPTKRLQATDIQAAAGWGVVALTGAIWVVQPFDWVRKTFFEKPE 55

[Close]
BLAST of Cla97C11G212570 vs. TrEMBL
Match: tr|A0A2P2J2E2|A0A2P2J2E2_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPE 56
          MAGE+ L KFLSP  R QSTDIQAAA WG+AA TTALW++QPFDWIKKTF +K +
Sbjct: 1  MAGEAALSKFLSPRLRPQSTDIQAAAFWGVAATTTALWLIQPFDWIKKTFMQKEQ 55

[Close]
BLAST of Cla97C11G212570 vs. Swiss-Prot
Match: sp|P48505|UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 2  AGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKPEE 57
          A  + LFKFL P  R QSTDIQAAAGWG+AA T ALWV+QP+D+++KTF EK EE
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEE 60

[Close]
BLAST of Cla97C11G212570 vs. TAIR10
Match: AT2G40765.1 (unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-13
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQPFDWIKKTFFEKP 55
          MAG S L   + P  + Q+ DIQAAAGWGIAAA  A+WVVQPF WIKKTF + P
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPP 52

The following BLAST results are available for this feature:
BLAST of Cla97C11G212570 vs. NCBI nr
Match NameE-valueIdentityDescription
ABK93367.13.1e-1679.25unknown [Populus trichocarpa] >ABK93644.1 unknown [Populus trichocarpa] >ABK9545... [more]
KJB67953.18.9e-1670.91hypothetical protein B456_010G219300 [Gossypium raimondii][more]
KJB78583.13.4e-1570.91hypothetical protein B456_013G008400 [Gossypium raimondii][more]
PLY84939.14.4e-1569.09hypothetical protein LSAT_6X11060 [Lactuca sativa][more]
PQQ03149.11.7e-1469.09hypothetical protein Pyn_30021 [Prunus yedoensis var. nudiflora][more]
BLAST of Cla97C11G212570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A9PAG4|A9PAG4_POPTR2.0e-1679.25Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500v3 PE=... [more]
tr|A0A0D2SX41|A0A0D2SX41_GOSRA5.9e-1670.91Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 ... [more]
tr|A0A0D2TST9|A0A0D2TST9_GOSRA2.2e-1570.91Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G008400 PE=4 ... [more]
tr|A0A2J6LC73|A0A2J6LC73_LACSA2.9e-1569.09Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X11060 PE=4 SV=1[more]
tr|A0A2P2J2E2|A0A2P2J2E2_RHIMU1.1e-1472.73Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of Cla97C11G212570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P48505|UCR11_SOLTU2.0e-1467.27Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX... [more]
BLAST of Cla97C11G212570 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40765.12.9e-1362.96unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G212570.1Cla97C11G212570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C11G212570CSPI06G02200Wild cucumber (PI 183967)cpiwmbB447
Cla97C11G212570CmaCh15G001710Cucurbita maxima (Rimu)cmawmbB296
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G212570Watermelon (97103) v2wmbwmbB069
Cla97C11G212570Watermelon (97103) v2wmbwmbB076
Cla97C11G212570Silver-seed gourdcarwmbB0015
Cla97C11G212570Silver-seed gourdcarwmbB0269
Cla97C11G212570Silver-seed gourdcarwmbB0652
Cla97C11G212570Cucumber (Gy14) v2cgybwmbB271
Cla97C11G212570Cucumber (Gy14) v2cgybwmbB347
Cla97C11G212570Cucumber (Gy14) v2cgybwmbB403
Cla97C11G212570Cucumber (Gy14) v1cgywmbB210
Cla97C11G212570Cucumber (Gy14) v1cgywmbB243
Cla97C11G212570Cucumber (Gy14) v1cgywmbB566
Cla97C11G212570Cucurbita maxima (Rimu)cmawmbB676
Cla97C11G212570Cucurbita maxima (Rimu)cmawmbB724
Cla97C11G212570Cucurbita maxima (Rimu)cmawmbB727
Cla97C11G212570Cucurbita maxima (Rimu)cmawmbB729
Cla97C11G212570Cucurbita moschata (Rifu)cmowmbB278
Cla97C11G212570Cucurbita moschata (Rifu)cmowmbB648
Cla97C11G212570Cucurbita moschata (Rifu)cmowmbB697
Cla97C11G212570Cucurbita moschata (Rifu)cmowmbB700
Cla97C11G212570Wild cucumber (PI 183967)cpiwmbB291
Cla97C11G212570Cucumber (Chinese Long) v3cucwmbB287
Cla97C11G212570Cucumber (Chinese Long) v3cucwmbB381
Cla97C11G212570Cucumber (Chinese Long) v3cucwmbB441
Cla97C11G212570Cucumber (Chinese Long) v2cuwmbB284
Cla97C11G212570Cucumber (Chinese Long) v2cuwmbB365
Cla97C11G212570Cucumber (Chinese Long) v2cuwmbB423
Cla97C11G212570Bottle gourd (USVL1VR-Ls)lsiwmbB122
Cla97C11G212570Bottle gourd (USVL1VR-Ls)lsiwmbB222
Cla97C11G212570Bottle gourd (USVL1VR-Ls)lsiwmbB270
Cla97C11G212570Melon (DHL92) v3.6.1medwmbB265
Cla97C11G212570Melon (DHL92) v3.6.1medwmbB516
Cla97C11G212570Melon (DHL92) v3.5.1mewmbB280
Cla97C11G212570Melon (DHL92) v3.5.1mewmbB522
Cla97C11G212570Watermelon (Charleston Gray)wcgwmbB065
Cla97C11G212570Watermelon (Charleston Gray)wcgwmbB196
Cla97C11G212570Watermelon (Charleston Gray)wcgwmbB294
Cla97C11G212570Watermelon (97103) v1wmwmbB152
Cla97C11G212570Watermelon (97103) v1wmwmbB286
Cla97C11G212570Watermelon (97103) v1wmwmbB361
Cla97C11G212570Wax gourdwgowmbB290
Cla97C11G212570Wax gourdwgowmbB294
Cla97C11G212570Wax gourdwgowmbB414