Cla97C07G133620 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G133620
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein
Location	Cla97Chr07 : 6682970 .. 6683297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCAGTCCAAAGCTACGGAATCTCCTGCATCCCACCAACATTGAAGCTGCTCTGTTATGGAGTGTTGCTGGTACAGCCACTGCTCTTTGGCTTATACAGGTATTGGTCTTAAACTTCACCGACTCTTTTCATCTACCACCATGTTTCTGTTTGTTCATCTGATGCTATTTGTGGAAGATAATAACTACTTTTCTCTTCTTGAAACTGAAAAACTTGGCAGCCATTTGATTGGTTGAAGAAGAAGATTTGGGAGGTGGAGGAGAAAGCAGAAAGGGAAGAGCAAACTAATGAATAA

mRNA sequence

ATGGTGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCAGTCCAAAGCTACGGAATCTCCTGCATCCCACCAACATTGAAGCTGCTCTGTTATGGAGTGTTGCTGGTACAGCCACTGCTCTTTGGCTTATACAGCCATTTGATTGGTTGAAGAAGAAGATTTGGGAGGTGGAGGAGAAAGCAGAAAGGGAAGAGCAAACTAATGAATAA

Coding sequence (CDS)

ATGGTGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCAGTCCAAAGCTACGGAATCTCCTGCATCCCACCAACATTGAAGCTGCTCTGTTATGGAGTGTTGCTGGTACAGCCACTGCTCTTTGGCTTATACAGCCATTTGATTGGTTGAAGAAGAAGATTTGGGAGGTGGAGGAGAAAGCAGAAAGGGAAGAGCAAACTAATGAATAA

Protein sequence

MVTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEKAEREEQTNE

Homology

[Close]

BLAST of Cla97C07G133620 vs. NCBI nr
Match: XP_022988689.1 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MVTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEKA 60
          M+TGEKGLLKFLSPKLRN LHP NIEAA+LWSVAGTATALWL+QPFDWLKKKIW VEEK 
Sbjct: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKT 75

Query: 61 EREEQTNE 69
          E + Q++E
Sbjct: 76 EDKVQSDE 83

[Close]

BLAST of Cla97C07G133620 vs. NCBI nr
Match: KGN50751.1 (hypothetical protein Csa_5G223090 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 6.9e-23
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MVTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEKA 60
          M TGEKGLLKFL PKLRN+LHP NIEAA LWSVAG ATALWL+QPFDWLKKK+W VEEK 
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 EREEQTNE 69
          E   QTNE
Sbjct: 61 ESGVQTNE 68

[Close]

BLAST of Cla97C07G133620 vs. NCBI nr
Match: PON71141.1 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Parasponia andersonii])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEE 59
          + GE GLLK L P++R  +   +I+AA LW VA TATALWLIQPFDWLKK ++E  E
Sbjct: 1  MAGEAGLLKSLRPRVR--VQAEDIKAAALWGVAATATALWLIQPFDWLKKTLFEKPE 55

[Close]

BLAST of Cla97C07G133620 vs. NCBI nr
Match: KJB78583.1 (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEKAE 61
          + GE  + KFL P+LR    P +I+AA  W VA T TALWLIQPFDWLKK   E  E  E
Sbjct: 1  MAGEGSMFKFLKPRLRP--QPIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPEPEE 59

Query: 62 R 63
          R
Sbjct: 61 R 59

[Close]

BLAST of Cla97C07G133620 vs. NCBI nr
Match: PON48600.1 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Trema orientalis])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEE 59
          + GE GLLK L P++R  +   +I+AA LW VA T TALWLIQPFDWLKK ++E  E
Sbjct: 1  MAGEAGLLKSLGPRVR--VQAEDIKAAALWGVAATTTALWLIQPFDWLKKTLFEKPE 55

[Close]

BLAST of Cla97C07G133620 vs. TrEMBL
Match: tr|A0A0A0KSL8|A0A0A0KSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-23
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MVTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEKA 60
          M TGEKGLLKFL PKLRN+LHP NIEAA LWSVAG ATALWL+QPFDWLKKK+W VEEK 
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 EREEQTNE 69
          E   QTNE
Sbjct: 61 ESGVQTNE 68

[Close]

BLAST of Cla97C07G133620 vs. TrEMBL
Match: tr|A0A2P5DCX7|A0A2P5DCX7_PARAD (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_075800 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-09
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEE 59
          + GE GLLK L P++R  +   +I+AA LW VA TATALWLIQPFDWLKK ++E  E
Sbjct: 1  MAGEAGLLKSLRPRVR--VQAEDIKAAALWGVAATATALWLIQPFDWLKKTLFEKPE 55

[Close]

BLAST of Cla97C07G133620 vs. TrEMBL
Match: tr|A0A0D2TST9|A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEKAE 61
          + GE  + KFL P+LR    P +I+AA  W VA T TALWLIQPFDWLKK   E  E  E
Sbjct: 1  MAGEGSMFKFLKPRLRP--QPIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPEPEE 59

Query: 62 R 63
          R
Sbjct: 61 R 59

[Close]

BLAST of Cla97C07G133620 vs. TrEMBL
Match: tr|A0A2P5BIJ3|A0A2P5BIJ3_9ROSA (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Trema orientalis OX=63057 GN=TorRG33x02_319780 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEE 59
          + GE GLLK L P++R  +   +I+AA LW VA T TALWLIQPFDWLKK ++E  E
Sbjct: 1  MAGEAGLLKSLGPRVR--VQAEDIKAAALWGVAATTTALWLIQPFDWLKKTLFEKPE 55

[Close]

BLAST of Cla97C07G133620 vs. TrEMBL
Match: tr|M0S970|M0S970_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MVTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEE 59
          M TG  G+ KFL P+LR    PT++ AA  W VA TATA+WLIQPFDWLKK++++  E
Sbjct: 1  MATG-SGMFKFLRPRLRP--QPTDVAAAATWGVAATATAVWLIQPFDWLKKQLFQNPE 55

[Close]

BLAST of Cla97C07G133620 vs. Swiss-Prot
Match: sp|P48505|UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-06
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 7  GLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKKKIWEVEEK 60
          GL KFL PKLR     T+I+AA  W VA    ALW+IQP+D+L+K   E +E+
Sbjct: 10 GLFKFLRPKLRP--QSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEE 60

[Close]

BLAST of Cla97C07G133620 vs. TAIR10
Match: AT2G40765.1 (unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.4e-06
Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 2  VTGEKGLLKFLSPKLRNLLHPTNIEAALLWSVAGTATALWLIQPFDWLKK 52
          + G  GLL  + PK++ +    +I+AA  W +A  A A+W++QPF W+KK
Sbjct: 1  MAGTSGLLNAVKPKIQTI----DIQAAAGWGIAAAAGAIWVVQPFGWIKK 46

The following BLAST results are available for this feature:

BLAST of Cla97C07G133620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988689.1	1.4e-23	82.35	ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima]	[more]
KGN50751.1	6.9e-23	80.88	hypothetical protein Csa_5G223090 [Cucumis sativus]	[more]
PON71141.1	7.4e-09	59.65	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Parasponia andersonii]	[more]
KJB78583.1	9.6e-09	55.74	hypothetical protein B456_013G008400 [Gossypium raimondii]	[more]
PON48600.1	1.6e-08	57.89	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Trema orientalis]	[more]

BLAST of Cla97C07G133620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSL8\|A0A0A0KSL8_CUCSA	4.5e-23	80.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1	[more]
tr\|A0A2P5DCX7\|A0A2P5DCX7_PARAD	4.9e-09	59.65	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Parasponia andersoni...	[more]
tr\|A0A0D2TST9\|A0A0D2TST9_GOSRA	6.4e-09	55.74	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G008400 PE=4 ...	[more]
tr\|A0A2P5BIJ3\|A0A2P5BIJ3_9ROSA	1.1e-08	57.89	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Trema orientalis OX=...	[more]
tr\|M0S970\|M0S970_MUSAM	1.4e-08	56.90	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]

BLAST of Cla97C07G133620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48505\|UCR11_SOLTU	4.0e-06	50.94	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX...	[more]

BLAST of Cla97C07G133620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40765.1	2.4e-06	40.00	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G133620.1	Cla97C07G133620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G133620	Cla007310	Watermelon (97103) v1	wmwmbB167
Cla97C07G133620	Csa5G223090	Cucumber (Chinese Long) v2	cuwmbB392
Cla97C07G133620	CSPI05G11680	Wild cucumber (PI 183967)	cpiwmbB412
Cla97C07G133620	CmaCh04G010570	Cucurbita maxima (Rimu)	cmawmbB780
Cla97C07G133620	CmoCh04G011230	Cucurbita moschata (Rifu)	cmowmbB754
Cla97C07G133620	CsGy5G008930	Cucumber (Gy14) v2	cgybwmbB375
Cla97C07G133620	Carg00159	Silver-seed gourd	carwmbB0700
Cla97C07G133620	CsaV3_5G011100	Cucumber (Chinese Long) v3	cucwmbB407

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G133620	Watermelon (97103) v2	wmbwmbB076
Cla97C07G133620	Silver-seed gourd	carwmbB0953
Cla97C07G133620	Cucumber (Gy14) v1	cgywmbB244
Cla97C07G133620	Cucurbita maxima (Rimu)	cmawmbB781
Cla97C07G133620	Cucurbita moschata (Rifu)	cmowmbB755
Cla97C07G133620	Bottle gourd (USVL1VR-Ls)	lsiwmbB298
Cla97C07G133620	Melon (DHL92) v3.6.1	medwmbB062
Cla97C07G133620	Melon (DHL92) v3.5.1	mewmbB068
Cla97C07G133620	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G133620	Wax gourd	wgowmbB538