Csa5G223090 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G223090
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein
Location	Chr5 : 10218372 .. 10218687 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATGTCCTACATCCCATCAACATTGAAGCTGCTGCGTTATGGAGTGTTGCTGGGATAGCCACTGCTCTTTGGCTTGTACAGGTATTGGTCTTTCTTTTCTTTTCATCTACCATCATGTTTCTGTTTGTTCAATGCTATTTGTGAAAGATCGTAACTATTCTTCTCGTCTTGTAACTGAAAAACATGGCAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGCGGTAGAGGAGAAAGGAGAAAGCGGGGTGCAAACTAATGAATAA

mRNA sequence

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATGTCCTACATCCCATCAACATTGAAGCTGCTGCGTTATGGAGTGTTGCTGGGATAGCCACTGCTCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGCGGTAGAGGAGAAAGGAGAAAGCGGGGTGCAAACTAATGAATAA

Coding sequence (CDS)

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATGTCCTACATCCCATCAACATTGAAGCTGCTGCGTTATGGAGTGTTGCTGGGATAGCCACTGCTCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGCGGTAGAGGAGAAAGGAGAAAGCGGGGTGCAAACTAATGAATAA

Protein sequence

MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKGESGVQTNE*

Homology

[Close]

BLAST of Csa5G223090 vs. TrEMBL
Match: A0A0A0KSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60
          MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 ESGVQTNE 69
          ESGVQTNE
Sbjct: 61 ESGVQTNE 68

[Close]

BLAST of Csa5G223090 vs. TrEMBL
Match: A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-08
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  + KFL P+LR    PI+I+AAA W VA   TALWL+QPFDWLKK
Sbjct: 3  GEGSMFKFLKPRLRP--QPIDIQAAAAWGVAATTTALWLIQPFDWLKK 48

[Close]

BLAST of Csa5G223090 vs. TrEMBL
Match: M0S970_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVW 55
          M TG  G+ KFL P+LR    P ++ AAA W VA  ATA+WL+QPFDWLKK+++
Sbjct: 1  MATGS-GMFKFLRPRLRP--QPTDVAAAATWGVAATATAVWLIQPFDWLKKQLF 51

[Close]

BLAST of Csa5G223090 vs. TrEMBL
Match: A0A067D646_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035393mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  +LKFL PK R  L P++++AAA W VA ++ AL+L+QPFDWLKK
Sbjct: 3  GEASMLKFLKPKSR--LQPVDVQAAAFWGVAAVSGALYLIQPFDWLKK 48

[Close]

BLAST of Csa5G223090 vs. TrEMBL
Match: A0A0D2SX41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-07
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE+ L KFL P  R  L P +++AAA+W VA    ALWL+QPFDWLKK
Sbjct: 3  GERALFKFLKPGQR--LQPADVQAAAMWGVAATTGALWLIQPFDWLKK 48

[Close]

BLAST of Csa5G223090 vs. TAIR10
Match: AT2G40765.1 (AT2G40765.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 8.5e-07
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          G  GLL  + PK++     I+I+AAA W +A  A A+W+VQPF W+KK
Sbjct: 3  GTSGLLNAVKPKIQT----IDIQAAAGWGIAAAAGAIWVVQPFGWIKK 46

[Close]

BLAST of Csa5G223090 vs. NCBI nr
Match: gi|700195574|gb|KGN50751.1| (hypothetical protein Csa_5G223090 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60
          MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 ESGVQTNE 69
          ESGVQTNE
Sbjct: 61 ESGVQTNE 68

[Close]

BLAST of Csa5G223090 vs. NCBI nr
Match: gi|763811731|gb|KJB78583.1| (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 64.3 bits (155), Expect = 9.5e-08
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  + KFL P+LR    PI+I+AAA W VA   TALWL+QPFDWLKK
Sbjct: 3  GEGSMFKFLKPRLRP--QPIDIQAAAAWGVAATTTALWLIQPFDWLKK 48

[Close]

BLAST of Csa5G223090 vs. NCBI nr
Match: gi|641816464|gb|KDO38464.1| (hypothetical protein CISIN_1g035393mg [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-07
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  +LKFL PK R  L P++++AAA W VA ++ AL+L+QPFDWLKK
Sbjct: 3  GEASMLKFLKPKSR--LQPVDVQAAAFWGVAAVSGALYLIQPFDWLKK 48

[Close]

BLAST of Csa5G223090 vs. NCBI nr
Match: gi|763800998|gb|KJB67953.1| (hypothetical protein B456_010G219300 [Gossypium raimondii])

HSP 1 Score: 61.2 bits (147), Expect = 8.0e-07
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE+ L KFL P  R  L P +++AAA+W VA    ALWL+QPFDWLKK
Sbjct: 3  GERALFKFLKPGQR--LQPADVQAAAMWGVAATTGALWLIQPFDWLKK 48

[Close]

BLAST of Csa5G223090 vs. NCBI nr
Match: gi|590570561|ref|XP_007011373.1| (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Theobroma cacao])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  + KFL P+LR    P +I+AAALW VA   T LWL+QPFDWLK+
Sbjct: 3  GEGAMFKFLRPRLRP--QPGDIQAAALWGVAATTTGLWLIQPFDWLKR 48

The following BLAST results are available for this feature:

BLAST of Csa5G223090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSL8_CUCSA	1.1e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223090 PE=4 SV=1	[more]
A0A0D2TST9_GOSRA	6.6e-08	62.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1	[more]
M0S970_MUSAM	1.9e-07	55.56	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A067D646_CITSI	1.9e-07	58.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035393mg PE=4 SV=1	[more]
A0A0D2SX41_GOSRA	5.6e-07	58.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1	[more]

BLAST of Csa5G223090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40765.1	8.5e-07	47.92	unknown protein	[more]

BLAST of Csa5G223090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195574\|gb\|KGN50751.1\|	1.6e-31	100.00	hypothetical protein Csa_5G223090 [Cucumis sativus]	[more]
gi\|763811731\|gb\|KJB78583.1\|	9.5e-08	62.50	hypothetical protein B456_013G008400 [Gossypium raimondii]	[more]
gi\|641816464\|gb\|KDO38464.1\|	2.8e-07	58.33	hypothetical protein CISIN_1g035393mg [Citrus sinensis]	[more]
gi\|763800998\|gb\|KJB67953.1\|	8.0e-07	58.33	hypothetical protein B456_010G219300 [Gossypium raimondii]	[more]
gi\|590570561\|ref\|XP_007011373.1\|	1.0e-06	58.33	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G223090.1	Csa5G223090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G223090	Cla007310	Watermelon (97103) v1	cuwmB387
Csa5G223090	Cla97C07G133620	Watermelon (97103) v2	cuwmbB392
Csa5G223090	CSPI05G11680	Wild cucumber (PI 183967)	cpicuB240
Csa5G223090	CmaCh04G010570	Cucurbita maxima (Rimu)	cmacuB746
Csa5G223090	CmoCh04G011230	Cucurbita moschata (Rifu)	cmocuB736
Csa5G223090	CsGy5G008930	Cucumber (Gy14) v2	cgybcuB224
Csa5G223090	Carg00159	Silver-seed gourd	carcuB0694

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G223090	Cucumber (Gy14) v1	cgycuB209
Csa5G223090	Cucurbita maxima (Rimu)	cmacuB747
Csa5G223090	Cucurbita moschata (Rifu)	cmocuB737
Csa5G223090	Melon (DHL92) v3.5.1	cumeB369
Csa5G223090	Watermelon (Charleston Gray)	cuwcgB361
Csa5G223090	Watermelon (Charleston Gray)	cuwcgB402
Csa5G223090	Cucurbita pepo (Zucchini)	cpecuB437
Csa5G223090	Cucurbita pepo (Zucchini)	cpecuB438
Csa5G223090	Bottle gourd (USVL1VR-Ls)	culsiB361
Csa5G223090	Bottle gourd (USVL1VR-Ls)	culsiB369
Csa5G223090	Melon (DHL92) v3.6.1	cumedB349
Csa5G223090	Silver-seed gourd	carcuB0926
Csa5G223090	Watermelon (97103) v2	cuwmbB365
Csa5G223090	Wax gourd	cuwgoB513