CmoCh04G011230 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G011230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquinol-cytochrome c reductase complex 6.7 kDa protein
LocationCmo_Chr04 : 5736860 .. 5737208 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTTTTGAGCTAAGTAAGAGATACAGAAACATAAAAGAAATGATGACAGGTGAGAAGGGTTTGTTGAAGTTCTTCAGCCCAAAGCTCCGGAACCGCCTGCATCCCATCAACATCGAAGCTGCTGTGCTATGGAGTGTTGCAGGCACAGCCACTGCCCTTTGGCTTGTACAGGTATTGGTCTTAAACTTCACCGACTCTTCTACCAGCATTCTGTTTGTTCATGATCATTACTACTTTTATTCTCTGCTTGAAACTGAAAAACTTGCAGCCATTTGACTGGTTGAAGAAGAAGATTTGGGAGGTGGAGGAAAAAGCAGAAGACAAGGTGCAAAGTGATGAATAA

mRNA sequence

ATGGCTCCTTTTGAGCTAAGTAAGAGATACAGAAACATAAAAGAAATGATGACAGGTGAGAAGGGTTTGTTGAAGTTCTTCAGCCCAAAGCTCCGGAACCGCCTGCATCCCATCAACATCGAAGCTGCTGTGCTATGGAGTGTTGCAGGCACAGCCACTGCCCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGATTTGGGAGGTGGAGGAAAAAGCAGAAGACAAGGTGCAAAGTGATGAATAA

Coding sequence (CDS)

ATGGCTCCTTTTGAGCTAAGTAAGAGATACAGAAACATAAAAGAAATGATGACAGGTGAGAAGGGTTTGTTGAAGTTCTTCAGCCCAAAGCTCCGGAACCGCCTGCATCCCATCAACATCGAAGCTGCTGTGCTATGGAGTGTTGCAGGCACAGCCACTGCCCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGATTTGGGAGGTGGAGGAAAAAGCAGAAGACAAGGTGCAAAGTGATGAATAA
Homology
[Close]
BLAST of CmoCh04G011230 vs. TrEMBL
Match: A0A0A0KSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 1 

Query: 16 MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKA 75
          M TGEKGLLKF  PKLRN LHPINIEAA LWSVAG ATALWLVQPFDWLKKK+W VEEK 
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 76 EDKVQSDE 84
          E  VQ++E
Sbjct: 61 ESGVQTNE 68

[Close]
BLAST of CmoCh04G011230 vs. TrEMBL
Match: A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-09
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKAE 76
          M GE  + KF  P+LR +  PI+I+AA  W VA T TALWL+QPFDWLKK   E  E  E
Sbjct: 1  MAGEGSMFKFLKPRLRPQ--PIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPEPEE 58

[Close]
BLAST of CmoCh04G011230 vs. TrEMBL
Match: A0A0D2SX41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEE 74
          M GE+ L KF  P    RL P +++AA +W VA T  ALWL+QPFDWLKK   E  E
Sbjct: 1  MAGERALFKFLKPG--QRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of CmoCh04G011230 vs. TrEMBL
Match: A0A067D646_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035393mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-08
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEK 75
          M GE  +LKF  PK  +RL P++++AA  W VA  + AL+L+QPFDWLKK   E  E+
Sbjct: 1  MAGEASMLKFLKPK--SRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEE 56

[Close]
BLAST of CmoCh04G011230 vs. TrEMBL
Match: M0S970_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 

Query: 16 MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEE 74
          M TG  G+ KF  P+LR +  P ++ AA  W VA TATA+WL+QPFDWLKK++++  E
Sbjct: 1  MATGS-GMFKFLRPRLRPQ--PTDVAAAATWGVAATATAVWLIQPFDWLKKQLFQNPE 55

[Close]
BLAST of CmoCh04G011230 vs. TAIR10
Match: AT2G40765.1 (AT2G40765.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-07
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKK 67
          M G  GLL    PK++     I+I+AA  W +A  A A+W+VQPF W+KK
Sbjct: 1  MAGTSGLLNAVKPKIQT----IDIQAAAGWGIAAAAGAIWVVQPFGWIKK 46

[Close]
BLAST of CmoCh04G011230 vs. NCBI nr
Match: gi|700195574|gb|KGN50751.1| (hypothetical protein Csa_5G223090 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 1 

Query: 16 MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKA 75
          M TGEKGLLKF  PKLRN LHPINIEAA LWSVAG ATALWLVQPFDWLKKK+W VEEK 
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 76 EDKVQSDE 84
          E  VQ++E
Sbjct: 61 ESGVQTNE 68

[Close]
BLAST of CmoCh04G011230 vs. NCBI nr
Match: gi|763811731|gb|KJB78583.1| (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKAE 76
          M GE  + KF  P+LR +  PI+I+AA  W VA T TALWL+QPFDWLKK   E  E  E
Sbjct: 1  MAGEGSMFKFLKPRLRPQ--PIDIQAAAAWGVAATTTALWLIQPFDWLKKTFLEKPEPEE 58

[Close]
BLAST of CmoCh04G011230 vs. NCBI nr
Match: gi|763800998|gb|KJB67953.1| (hypothetical protein B456_010G219300 [Gossypium raimondii])

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-08
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEE 74
          M GE+ L KF  P    RL P +++AA +W VA T  ALWL+QPFDWLKK   E  E
Sbjct: 1  MAGERALFKFLKPG--QRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of CmoCh04G011230 vs. NCBI nr
Match: gi|641816464|gb|KDO38464.1| (hypothetical protein CISIN_1g035393mg [Citrus sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEK 75
          M GE  +LKF  PK  +RL P++++AA  W VA  + AL+L+QPFDWLKK   E  E+
Sbjct: 1  MAGEASMLKFLKPK--SRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEE 56

[Close]
BLAST of CmoCh04G011230 vs. NCBI nr
Match: gi|590570561|ref|XP_007011373.1| (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Theobroma cacao])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1 

Query: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEE 74
          M GE  + KF  P+LR +  P +I+AA LW VA T T LWL+QPFDWLK+   E  E
Sbjct: 1  MAGEGAMFKFLRPRLRPQ--PGDIQAAALWGVAATTTGLWLIQPFDWLKRTFLEKPE 55

The following BLAST results are available for this feature:
BLAST of CmoCh04G011230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G011230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSL8_CUCSA1.8e-2380.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223090 PE=4 SV=1[more]
A0A0D2TST9_GOSRA3.2e-0955.00Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1[more]
A0A0D2SX41_GOSRA3.6e-0852.63Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1[more]
A0A067D646_CITSI7.9e-0850.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035393mg PE=4 SV=1[more]
M0S970_MUSAM1.0e-0751.72Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
BLAST of CmoCh04G011230 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40765.14.6e-0746.00 unknown protein[more]
BLAST of CmoCh04G011230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195574|gb|KGN50751.1|2.5e-2380.88hypothetical protein Csa_5G223090 [Cucumis sativus][more]
gi|763811731|gb|KJB78583.1|4.6e-0955.00hypothetical protein B456_013G008400 [Gossypium raimondii][more]
gi|763800998|gb|KJB67953.1|5.1e-0852.63hypothetical protein B456_010G219300 [Gossypium raimondii][more]
gi|641816464|gb|KDO38464.1|1.1e-0750.00hypothetical protein CISIN_1g035393mg [Citrus sinensis][more]
gi|590570561|ref|XP_007011373.1|1.9e-0752.63Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G011230.1CmoCh04G011230.1mRNA