CmaCh04G010570 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G010570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUbiquinol-cytochrome c reductase complex 6.7 kDa protein
LocationCma_Chr04 : 5461708 .. 5462881 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTTTTGAGCTAAGTAAGAGATACAGAAACATAAAAGAAATGATGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCAGCCCAAAGCTCCGGAACCGCCTGCATCCCATCAACATCGAAGCTGCTGTGCTATGGAGTGTTGCAGGCACTGCCACTGCCCTTTGGCTTGTACAGGTATTAGTCTTAAACTTCACCGACTCTTCTACCAGCATTCTGTTTGTTCATGATCATTACTACTTTTATTCTCTGCTTGAAACTGAAAAACTTGCAGCCATTTGACTGGTTGAAGAAGAAGATTTGGGGGGTGGAGGAAAAAACAGAAGACAAGGTGCAAAGTGATGAATAAGATAGGAGTGTTGCAAAGGACTGTAATGCCTCTAATGTCAAGTAAGTTGGTAACTCTAATAAGACTTGATATGATATGAAAAATGTCCATCCTTCTTCTTGTTCTTTTACTCTCTTTTTATTGGGATGAACCATCAAGATTCAAGCTTGGTGGGGATCAGGAGCAGCATCAGAGTGTTGCTTGAGAGCTTGAAACACTTCAGAACTGGTACTGAAAATCTTAGCCCTCCTATTATAATCTGTAGGCTCTCTACCTTCATCTTCCCCCATAATGGCTTCTCTTTCCAAACATTCAAGCAGCTCCACCACTCCCTTCCCCCCTCCGCCACATTTCTCATCCAACCTCCCTAGCTTCAGCCACTCTTCTATCTCCTGCTCCGCCACAGAGCCCCCCCAACCACCCTGACTAACACATCTTGGCGCTGCCGCCGCAACCCGACGGCAGAACCATGGTGGGGAAATGGCTGAAATTGGCCTGATCTTGGGGAAGACGACGGTGGAGGAGCGGTGGAAGAAGGATGGCGACGGTGGTGGTATTATGAGAGATGCAGAGACGACTTGCATGGTCGGTTTGGTGGGGGGGGTGTTGATAAAATTATGGGCTTTTCAGTAATGGGCAGAAATTTTGGGGGAGAGGGAGTTTGTATTATAGAAAAATTTCAGAGTAAGAGAGGCACCGCCCCTGGCCACCGTTTGGACGCCCACGTGGCAGTCCCTGCAATGGCACGTGGTCACGTGATCTCTCTTTATCATCAATATCTTTAACATTTTAGTTCAAATTATCAACAAAATAATAATACAAATATGAATATAATATTGGTGACAA

mRNA sequence

ATGGCTCCTTTTGAGCTAAGTAAGAGATACAGAAACATAAAAGAAATGATGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCAGCCCAAAGCTCCGGAACCGCCTGCATCCCATCAACATCGAAGCTGCTGTGCTATGGAGTGTTGCAGGCACTGCCACTGCCCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGATTTGGGGGGTGGAGGAAAAAACAGAAGACAAGGTGCAAAGTGATGAATAAGATAGGAGTGTTGCAAAGGACTGTAATGCCTCTAATGTCAAATTCAAGCTTGGTGGGGATCAGGAGCAGCATCAGAGTGTTGCTTGAGAGCTTGAAACACTTCAGAACTGGTACTGAAAATCTTAGCCCTCCTATTATAATCTGTAGGCTCTCTACCTTCATCTTCCCCCATAATGGCTTCTCTTTCCAAACATTCAAGCAGCTCCACCACTCCCTTCCCCCCTCCGCCACATTTCTCATCCAACCTCCCTAGCTTCAGCCACTCTTCTATCTCCTGCTCCGCCACAGAGCCCCCCCAACCACCCTGACTAACACATCTTGGCGCTGCCGCCGCAACCCGACGGCAGAACCATGGTGGGGAAATGGCTGAAATTGGCCTGATCTTGGGGAAGACGACGGTGGAGGAGCGGTGGAAGAAGGATGGCGACGGTGGTGGTATTATGAGAGATGCAGAGACGACTTGCATGGTCGGTTTGGTGGGGGGGGTGTTGATAAAATTATGGGCTTTTCAGTAATGGGCAGAAATTTTGGGGGAGAGGGAGTTTGTATTATAGAAAAATTTCAGAGTAAGAGAGGCACCGCCCCTGGCCACCGTTTGGACGCCCACGTGGCAGTCCCTGCAATGGCACGTGGTCACGTGATCTCTCTTTATCATCAATATCTTTAACATTTTAGTTCAAATTATCAACAAAATAATAATACAAATATGAATATAATATTGGTGACAA

Coding sequence (CDS)

ATGGCTCCTTTTGAGCTAAGTAAGAGATACAGAAACATAAAAGAAATGATGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCAGCCCAAAGCTCCGGAACCGCCTGCATCCCATCAACATCGAAGCTGCTGTGCTATGGAGTGTTGCAGGCACTGCCACTGCCCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGATTTGGGGGGTGGAGGAAAAAACAGAAGACAAGGTGCAAAGTGATGAATAA

Protein sequence

MAPFELSKRYRNIKEMMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKTEDKVQSDE
Homology
[Close]
BLAST of CmaCh04G010570 vs. TrEMBL
Match: A0A0A0KSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKT 75
          M TGEKGLLKFL PKLRN LHPINIEAA LWSVAG ATALWLVQPFDWLKKK+W VEEK 
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 76 EDKVQSDE 84
          E  VQ++E
Sbjct: 61 ESGVQTNE 68

[Close]
BLAST of CmaCh04G010570 vs. TrEMBL
Match: A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-09
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKK 67
          M GE  + KFL P+LR +  PI+I+AA  W VA T TALWL+QPFDWLKK
Sbjct: 1  MAGEGSMFKFLKPRLRPQ--PIDIQAAAAWGVAATTTALWLIQPFDWLKK 48

[Close]
BLAST of CmaCh04G010570 vs. TrEMBL
Match: A0A0D2SX41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-08
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKK 67
          M GE+ L KFL P    RL P +++AA +W VA T  ALWL+QPFDWLKK
Sbjct: 1  MAGERALFKFLKPG--QRLQPADVQAAAMWGVAATTGALWLIQPFDWLKK 48

[Close]
BLAST of CmaCh04G010570 vs. TrEMBL
Match: A0A067D646_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035393mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-08
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKTE 76
          M GE  +LKFL PK  +RL P++++AA  W VA  + AL+L+QPFDWLKK      EK+E
Sbjct: 1  MAGEASMLKFLKPK--SRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFL---EKSE 57

Query: 77 DK 79
          +K
Sbjct: 61 EK 57

[Close]
BLAST of CmaCh04G010570 vs. TrEMBL
Match: M0S970_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-08
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIW 70
          M TG  G+ KFL P+LR +  P ++ AA  W VA TATA+WL+QPFDWLKK+++
Sbjct: 1  MATGS-GMFKFLRPRLRPQ--PTDVAAAATWGVAATATAVWLIQPFDWLKKQLF 51

[Close]
BLAST of CmaCh04G010570 vs. TAIR10
Match: AT2G40765.1 (AT2G40765.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKK 67
          M G  GLL  + PK++     I+I+AA  W +A  A A+W+VQPF W+KK
Sbjct: 1  MAGTSGLLNAVKPKIQT----IDIQAAAGWGIAAAAGAIWVVQPFGWIKK 46

[Close]
BLAST of CmaCh04G010570 vs. NCBI nr
Match: gi|700195574|gb|KGN50751.1| (hypothetical protein Csa_5G223090 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.6e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKT 75
          M TGEKGLLKFL PKLRN LHPINIEAA LWSVAG ATALWLVQPFDWLKKK+W VEEK 
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 76 EDKVQSDE 84
          E  VQ++E
Sbjct: 61 ESGVQTNE 68

[Close]
BLAST of CmaCh04G010570 vs. NCBI nr
Match: gi|763811731|gb|KJB78583.1| (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-09
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKK 67
          M GE  + KFL P+LR +  PI+I+AA  W VA T TALWL+QPFDWLKK
Sbjct: 1  MAGEGSMFKFLKPRLRPQ--PIDIQAAAAWGVAATTTALWLIQPFDWLKK 48

[Close]
BLAST of CmaCh04G010570 vs. NCBI nr
Match: gi|641816464|gb|KDO38464.1| (hypothetical protein CISIN_1g035393mg [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-08
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKTE 76
          M GE  +LKFL PK  +RL P++++AA  W VA  + AL+L+QPFDWLKK      EK+E
Sbjct: 1  MAGEASMLKFLKPK--SRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFL---EKSE 57

Query: 77 DK 79
          +K
Sbjct: 61 EK 57

[Close]
BLAST of CmaCh04G010570 vs. NCBI nr
Match: gi|763800998|gb|KJB67953.1| (hypothetical protein B456_010G219300 [Gossypium raimondii])

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-08
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKK 67
          M GE+ L KFL P    RL P +++AA +W VA T  ALWL+QPFDWLKK
Sbjct: 1  MAGERALFKFLKPG--QRLQPADVQAAAMWGVAATTGALWLIQPFDWLKK 48

[Close]
BLAST of CmaCh04G010570 vs. NCBI nr
Match: gi|590570561|ref|XP_007011373.1| (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKTE 76
          M GE  + KFL P+LR +  P +I+AA LW VA T T LWL+QPFDWLK+      EK E
Sbjct: 1  MAGEGAMFKFLRPRLRPQ--PGDIQAAALWGVAATTTGLWLIQPFDWLKRTFL---EKPE 57

Query: 77 DK 79
           K
Sbjct: 61 SK 57

The following BLAST results are available for this feature:
BLAST of CmaCh04G010570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G010570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSL8_CUCSA4.6e-2482.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223090 PE=4 SV=1[more]
A0A0D2TST9_GOSRA4.2e-0962.00Uncharacterized protein OS=Gossypium raimondii GN=B456_013G008400 PE=4 SV=1[more]
A0A0D2SX41_GOSRA2.7e-0858.00Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1[more]
A0A067D646_CITSI2.7e-0851.61Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035393mg PE=4 SV=1[more]
M0S970_MUSAM6.1e-0855.56Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
BLAST of CmaCh04G010570 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40765.12.7e-0746.00 unknown protein[more]
BLAST of CmaCh04G010570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195574|gb|KGN50751.1|6.6e-2482.35hypothetical protein Csa_5G223090 [Cucumis sativus][more]
gi|763811731|gb|KJB78583.1|6.0e-0962.00hypothetical protein B456_013G008400 [Gossypium raimondii][more]
gi|641816464|gb|KDO38464.1|3.9e-0851.61hypothetical protein CISIN_1g035393mg [Citrus sinensis][more]
gi|763800998|gb|KJB67953.1|3.9e-0858.00hypothetical protein B456_010G219300 [Gossypium raimondii][more]
gi|590570561|ref|XP_007011373.1|1.1e-0753.23Ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G010570.1CmaCh04G010570.1mRNA