CsaV3_4G017430 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G017430
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 10884607 .. 10885147 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGAGAATCCGCTCCGATCCTCTTCGCTTTGGTGTTCTATCCTCTGCGCACATTGATCTCTCCATTGTTTCTCGTTTTTAATCTGATTTGTTCATCGGATTACTATTCCTCTAATTCTTACAGTAATCCGGTCTTTTTTTTCCTTTTTTTATTTCCTCTTTTATCTTTTTTTTTGTACCGCGTCAGTGACGTAAAGAGCGTTTGGCAAATCGGATGTTTTTTTGTACCTGTTTGTTCGTATTTGATTTATGCGTAATTTGTCTCTTGGTTGAATCGATTCGGTGTTTTTAATTGTTTTGGCATCGATTGATAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

mRNA sequence

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Coding sequence (CDS)

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Protein sequence

MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTTDQLAA

Homology

[Close]

BLAST of CsaV3_4G017430 vs. NCBI nr
Match: KGN54032.1 (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX 60

Query: 61 XLEKIRMDTTDQLAA 76
          XLEKIRMDTTDQLAA
Sbjct: 61 XLEKIRMDTTDQLAA 75

[Close]

BLAST of CsaV3_4G017430 vs. TrEMBL
Match: tr|A0A0A0L0C4|A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX 60

Query: 61 XLEKIRMDTTDQLAA 76
          XLEKIRMDTTDQLAA
Sbjct: 61 XLEKIRMDTTDQLAA 75

The following BLAST results are available for this feature:

BLAST of CsaV3_4G017430 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54032.1	1.8e-32	100.00	hypothetical protein Csa_4G269150 [Cucumis sativus]	[more]

BLAST of CsaV3_4G017430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G017430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G017430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0C4\|A0A0A0L0C4_CUCSA	1.2e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G017430.1	CsaV3_4G017430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G017430	CSPI04G12650	Wild cucumber (PI 183967)	cpicucB221
CsaV3_4G017430	Cucsa.152840	Cucumber (Gy14) v1	cgycucB232
CsaV3_4G017430	CmaCh02G011790	Cucurbita maxima (Rimu)	cmacucB0728
CsaV3_4G017430	CmoCh02G012130	Cucurbita moschata (Rifu)	cmocucB0716
CsaV3_4G017430	Cp4.1LG05g05510	Cucurbita pepo (Zucchini)	cpecucB0906
CsaV3_4G017430	CsGy4G011620	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G017430	Carg13969	Silver-seed gourd	carcucB0539
CsaV3_4G017430	Cla003136	Watermelon (97103) v1	cucwmB362
CsaV3_4G017430	ClCG02G024300	Watermelon (Charleston Gray)	cucwcgB303
CsaV3_4G017430	Lsi10G009300	Bottle gourd (USVL1VR-Ls)	cuclsiB271
CsaV3_4G017430	Cla97C02G050550	Watermelon (97103) v2	cucwmbB290
CsaV3_4G017430	Bhi10G000383	Wax gourd	cucwgoB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G017430	Silver-seed gourd	carcucB0558
CsaV3_4G017430	Cucurbita maxima (Rimu)	cmacucB0662
CsaV3_4G017430	Cucurbita moschata (Rifu)	cmocucB0647
CsaV3_4G017430	Cucurbita pepo (Zucchini)	cpecucB0345
CsaV3_4G017430	Wild cucumber (PI 183967)	cpicucB216
CsaV3_4G017430	Melon (DHL92) v3.5.1	cucmeB295
CsaV3_4G017430	Melon (DHL92) v3.6.1	cucmedB287