Carg13969 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13969
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_097 : 6159 .. 6965 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACACTCTTCTTCCGCCCCCAATAGATTGCTCTCTCTCTCTCTCTCCCCCTCTGTTTCTTGCCCTTAGCGTTTTGCGGAAGCTTTGGTTTCTCGACGCTACCTCAATGCTGCATTGTTCTCACTGTCTCATACACTGCGAAGCCGATCGCTTCGATGACTTCGTGTGAGAATCCTCCTCGATCTTCTTCGCTTTTCTGTCCTGCTGTGTTTATATGCATATACTCTTCGTTGTTGTTCGCGTTGCTTTTTGTTTGTTTGTCCTAATTTATTGTTCCGATTGCTACTCCTTTTATTCTGCTCATTCGATCCAGTAATTCGACCTTTTTTTTTGTTGATTCTTTTCACTAGAATTTGATTTCTGTGTTTTTTTGTCTCTCGGTTGAAATCGATTCGTTGTTTCTTATGGTTTTAGCACCGATTGGCAGATGTTGTTCGGGCTGCGGTAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATGCTCGGAAAGGACACGAAATTGAAGAAGAGGAAGACCGAGAAGAAGCAGAAACATGAGAAGATTGAGATGGATTCCGCGGATCTGCAACTCGCAACATGATTTTTTTCACGGCAGTTTTGACTAATAACGACTTAAAACTCAACAATTATTTGAATCATCACCAAAATTTTTCTAAAGGAACCATTATTCTGAGACATTGATCCTCCGACGTTTTCGAGTTCCAGTTTGTTGCCCTATTTTGTTCGCAATCAATAATGGCCCTCTCCTGGTAATTGGAATAATAAGTTCTTTACAATAATTCATATT

mRNA sequence

ATTACACTCTTCTTCCGCCCCCAATAGATTGCTCTCTCTCTCTCTCTCCCCCTCTGTTTCTTGCCCTTAGCGTTTTGCGGAAGCTTTGGTTTCTCGACGCTACCTCAATGCTGCATTGTTCTCACTGTCTCATACACTGCGAAGCCGATCGCTTCGATGACTTCGTATGTTGTTCGGGCTGCGGTAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATGCTCGGAAAGGACACGAAATTGAAGAAGAGGAAGACCGAGAAGAAGCAGAAACATGAGAAGATTGAGATGGATTCCGCGGATCTGCAACTCGCAACATGATTTTTTTCACGGCAGTTTTGACTAATAACGACTTAAAACTCAACAATTATTTGAATCATCACCAAAATTTTTCTAAAGGAACCATTATTCTGAGACATTGATCCTCCGACGTTTTCGAGTTCCAGTTTGTTGCCCTATTTTGTTCGCAATCAATAATGGCCCTCTCCTGGTAATTGGAATAATAAGTTCTTTACAATAATTCATATT

Coding sequence (CDS)

ATGCTGCATTGTTCTCACTGTCTCATACACTGCGAAGCCGATCGCTTCGATGACTTCGTATGTTGTTCGGGCTGCGGTAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATGCTCGGAAAGGACACGAAATTGAAGAAGAGGAAGACCGAGAAGAAGCAGAAACATGAGAAGATTGAGATGGATTCCGCGGATCTGCAACTCGCAACATGA

Protein sequence

MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRKTEKKQKHEKIEMDSADLQLAT

Homology

[Close]

BLAST of Carg13969 vs. NCBI nr
Match: KGN54032.1 (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRKTEKKQ 60
          MLHCSHCL H E DRFDDFVCCSGCGKVLGQFFGGKYIDHSKP+LG  TKLKK       
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX 60

Query: 61 KHEKIEMDSADLQLA 76
            EKI MD+ D QLA
Sbjct: 61 XLEKIRMDTTD-QLA 74

[Close]

BLAST of Carg13969 vs. TrEMBL
Match: tr|A0A0A0L0C4|A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRKTEKKQ 60
          MLHCSHCL H E DRFDDFVCCSGCGKVLGQFFGGKYIDHSKP+LG  TKLKK       
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKXXXXXXX 60

Query: 61 KHEKIEMDSADLQLA 76
            EKI MD+ D QLA
Sbjct: 61 XLEKIRMDTTD-QLA 74

The following BLAST results are available for this feature:

BLAST of Carg13969 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54032.1	1.9e-21	74.67	hypothetical protein Csa_4G269150 [Cucumis sativus]	[more]

BLAST of Carg13969 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg13969 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13969 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0C4\|A0A0A0L0C4_CUCSA	1.3e-21	74.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13969-RA	Carg13969-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13969	Cla003136	Watermelon (97103) v1	carwmB0505
Carg13969	Csa4G269150	Cucumber (Chinese Long) v2	carcuB0535
Carg13969	ClCG02G024300	Watermelon (Charleston Gray)	carwcgB0493
Carg13969	CSPI04G12650	Wild cucumber (PI 183967)	carcpiB0542
Carg13969	Cucsa.152840	Cucumber (Gy14) v1	carcgyB0580
Carg13969	CmaCh02G011790	Cucurbita maxima (Rimu)	carcmaB0716
Carg13969	CmoCh02G012130	Cucurbita moschata (Rifu)	carcmoB0694
Carg13969	Lsi10G009300	Bottle gourd (USVL1VR-Ls)	carlsiB458
Carg13969	Cp4.1LG05g05510	Cucurbita pepo (Zucchini)	carcpeB0718
Carg13969	CsGy4G011620	Cucumber (Gy14) v2	carcgybB0511
Carg13969	CsaV3_4G017430	Cucumber (Chinese Long) v3	carcucB0539
Carg13969	Cla97C02G050550	Watermelon (97103) v2	carwmbB0531
Carg13969	Bhi10G000383	Wax gourd	carwgoB0618

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13969	Melon (DHL92) v3.5.1	carmeB0512
Carg13969	Melon (DHL92) v3.6.1	carmedB0518