Lsi10G009300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Small heat-shock protein, putative
Location	chr10 : 13760929 .. 13766499 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTACGACCAACCTCACCAACACAAAACACACAACATTAATCAAATCAAATTAAAAAAAAAAAAAATATATATATATATATATATATATAATAATAATATGTCATCCAAACATTACCGAACATATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGACGGCTGCATCATTCTCACCCTCTACATTCCTGGTTTGTCCCTCTAATTATATCCAATATTTTTCTTCTTTCTCATTATTAAGCTGATTTAATATTGTGTTGGAATAAATAATACAGACACTTTTTAATTCTCTAATCACTTTTTTTTTTCAAAAATTAATATTAATTTATGTATACTCGACTTTTTTGAATAATACAGAAGAATTTGCAAATATAACAAAATTTAGATTCAACTCTTAAGGGTTATTTAGGAGGCTGAAATGTAATCAGGATTACTAGAAATTAGAGGGATATTGGAATGCGTAAAGTATCGAGGGCGGAACAAAAATGGGATCATGAAATGTCAAAATGGTGGGAAAGATAGTTTAGTTAAAAATTGTCGAGACAGAATGAGTTTAATATTACAAATTGGGCCCAAAACACTCAATCTAAACATGGGTTTTTTATTACATTATAATCCAAACTCATTCCATTACGGACCCCCAAACAATCTTTAGAGTCTACCAGTGATAGACCATATTGTTAAGAGGAGTCTATTAGTGATCAATTTTGTTATATTCTAAAAAATATTGCTATGCACTTAATTATTGACCTTAAAAGTGTTTTCATTGCAATTTTTTTTTTCTAGAGAATGTTTATTGGGTCTTTAAGACATCAAATGGAAAGAGAGTTAAAATAAGGGTAATTGTAATGAGTAGCAATTTTAGAGATAATAATCAAGTGTATAGCAACATTTTAAAAAAATACTGATAGATTTTGCTATATTTATAATTTTTATAAAAATGTTGTTATATATGCTAATACTTTTAATCTAATTGTTATATTTGCAATTGTCCCTTAAAATAATTAATATAATTAAATTAATAATGTGGCTTGAAATTCTAAGGTATTATTTTAAATTGTTATGTTAAATATCAATTTATACTCCTAAATCAATCTAATAATTGTATCAATTAGTGAATATCATGAACATAAGTTAATTGACCTAAAAGTTGTAGTATTAACTGATTCTCCCATCTCCCATCTATCTTATGAATTAAAATTGAAGCGTTTTAATTAGTCGTTAAATGGAATTGTTCATTTTAAATTGAAACAATTGCAAATATAGCAACCACATTCAAATTAGTATTAACATATATAACATTTTTAAAAAATTACGAATATAGCAGAATCTATCAGCAACGAAGTCTATCACTAATAAACTTTGCAATATTTGTAATTTTTTTAAAATATTGCTATACACTTAGTTATTATCTTTAAAATTGTTACTCATTATAATTATCATTTTAAGTTAGGTTATGATTTTGAAAATACATGTACTGCCATGCAGGTTTCAGTAAGGAGCAAATTCAAGTTCAAGTATCCTCAAGAAAAAAGCTGAGGATTAGTGGGGAGAGGGCTTACAAGAACAGCAAGCACGCATGGCAGCGCTTTCACACGGAGTTTGAAATCCCATCAAACTGCGACACTGCCAAAATTACTGCCAAATACAAGGCCGGAGTCCTTCATGTCCTGCAACCGATATTATTGCAGGACAACCAGTCCAAGCCACACACAGAACAAACTGAGAAGCCAAATTTGGAACAAACAAACCAAACTACTAATTCCGCTGCTGCCATTACCAACGATGACGCACCACTTACAGACACTCCGAATATTAACAAGAAGCTTACAGTTCCGGCAGGACCACGCTTGAAGGAGGTGATTCCCGGAGTGTTTCTCAAGTTGGTTTTGCCTATTTTGCTGGCAGTTGTTCTGTTAATGTTTTGGTATGCTAAGAGGCTGAGCTCCACCGTGTCTGTCGGAATACTCGGAGAACCTCCACTGTGATTCCTTTGCTAGCGTATTAGATAACATGGGGTTCCATTTCAAAAAAACTAATTGCAACGAAAGGAGTAGCACTGATCTATCTTAATAAGAGTGTGAGATCTTTTGATTTTTTCGATATGGATTCCTCAACATGTCGTTTTCACAAATTCTGTAACAATAATAAAAAAAAAACATTGTAGCTATATTATTCTTTATTGTCATATAATTTATACTGCATCAACTAATAAAAATAACATGAAAGCTAGTGGGCATGTAACGCCCGAGTTTAGGAGGAGAACATGAATGGACCGAAATCACATTTGAATGAGAGAGTCCTGAGGACATGAAAGTATGGTTAAGAAATACTTAAAATAAATCAAAGTTATTACCTATACCAACAAGATGCGTGCTTAGTTTGGGTCAATAATTTAAAAATATATAAAATTTGGGAAGATTACATAATATTTATAAAATTACTAGAATTTTAGTGTAATCTCTCCGACATGTATCGAGATGTACTGAAAAAGCCCAAAACAATCAATAAGTTAGGAAAAAATTGATTTTTTAACTAAAGTTCGGTGGTTGATCTCGCTCGAAATAGACCGAGAAAAGTTGTTTGAACAAATTTTTAAAAATGCTGCTAATTTTGTAAGATGAAAACTTTGATGGACTATTTCTCACACTCAATTTAAGCTTTTCGGTCCATTAATAAATTGTTTATCAAGTTTTTAAAATTGGGTAAAAATATTTCATAAAACCTTGTCTACCTCTATGGAAAGAATTATGAAATAAATACACAAATTAGTAAGTCTACATGCAATTAAATAAACTTAAATAAAAACGAGCATCGAATAATATTTCAATTTTCCCTTAAAAGAGAATATTCATTCAATTTTAATTGAGAGTATCTACCAATTAATATAATATATATCAGTCATTAATGTTTAGAATCGAATTTGTTTTCAATTTACGATTTTAGAGTTCATGTTTTTTTTTTCTTTCTTTTTTATAAAGTTCTTACCAATTATTGTTTGAATCATTCTACATCCAAAAAGTAGGACTGCAAGTCAACCAAAAAAAAAATCCAAAAATCAAATCAAATCAAATCAATACCCTAATTCATGTTGGTTCAATTTTTTTAGTATAAACTTGGACACTTAGGTTTATATTTGGAGAGAGAAAAAAACTACTAGTTTTGGACCGGTTTTTTATTTAAAAAATAAATAAAAATTGAACCGAACCGAAAGGATATATATATACTCTTTTAGTATTTTAATTATTGTAATGTATATATATTTGTTCGTTAGAAAAAGGTTCAAATCATGGTGCAGTCGCATATATGTTTGTTATTTAGAAAATGGTTAGTGTCCAATTTCAACGAGTAAATAAATAATAGACTCAATTTTAATTTTTTTTAAAAAAAAAAAAAAAAGAAAAAAGATCCAACATAAAATAAAAGTGAAAATAAAAATAAAAAAAATAAAAGAAAAAACAGGCTCAAAACTCAAAACCAAATCGAATCAAACAAAAGTGAATTCATCTTTCATTAGACTTCGGTTTGGTTCCCTTCTTAATAAAATTAAACAATTTGGTTGAATTTTTTATTAACCTCAAGAACGAGAAAATCAACTTACTTTCACCCCTACCAAAACGTACTAACGAAACTAAAAAAATATAAATTACAAATTTAACAATTTTATGGGACTCTACGTTTCATTTGATTCTTAAATTTCAATTTGTACGGTTTACGGCCTTTAAGTTTTTACTAATGCTCACTTTTGGAATTTAAAATTAACTTTTAGTTTATTAATTGGGTAATTGTTTTAAATGACAAAACTATTAGAACTATTTTCAAATATAGTAAATTGTCACATGTCACTAATAGATACATTTTGCCATATTTATAAATAAGTTAGTTTATTTTACCATATTCAAATATGGTAAAATAAACTAACTTAAAGGTAAAAAGTGATAGAAAGTGTAATTCTGGAAACTTTGGGAATTAGAATAAAACTAATAATAAAAGTGTAGTATTCTAAAACGAGAAAACCTATGATATAGTTGAAAATGATTAATATTTGGTCATTTTTTAAAAGTAATAAATAATAATGAAACAATTTGATTGGATGCTTCAGAGTAATTTTAAAATGACTAAAATTACTTTTGTCATTTTTAAAAGGGAAACTTTTTAAAAATAGAAAAAAAAACTATTTAAACAAAATAGCAAACTTTTTAGATAGTTGTAATAGACGTTGATATAAGCCTATCAGAGTCTTACTAGTGATAGAAATGATAGAAATGTCTATCAGTATTTTTTTTTTTTTTTACTATTTTCTATAAATAGTTTGACTTTTTTCTATCTGTGAAAATTTTCTTTATAAAATATATTTTTAATCATTTAAAACTAATTTTAATGATTAAAAAATATATTTAAAAGTATAAAATTAAAAATTAAATTAATTTTAAAGAATTAAGGTATATTTTTAAGTAATTTTTAAAATGATAAAAGTGATTTTACTTTAAAAGACCGTCCGAGAAATTTGTCATCGTGACCGTACAAAATTGAGAACAAATAGCGAGGGGAGACATACAAAAGTACCAAACCAGCCTCGGAGAACTCCCTGAAATCCGCGTAAAGTAAGGGTACTTTTGTAATAACAAACATATATTAATTAAAATTACGGAATTTCAAGGTGGATAGAACATATAAATAGCCAAAAACGCGTTAGGGTTGCGCATTACGGACTCATCTTCCGCCCCCAATTTCCAATACATCACTCTCTTTCTGCTTCTTCCCCTCACTTCTCTGCAGGCACAAGCTTCGGTTCCTCCACGCTCCACTCAATGTTGCATTGTTCTCACTGCCTCATACACCGCCAACCCGATCGCTTCGATGACTTCGTGTGAGAATTCGCTCCGATCATCTTCGCTTTTGTGTCCTCTTCTCTGCGCATATTGATCTCCTCGTCATTGTTCTCATTGCTTCTCGTTTTTAATCTGTTTTGTTCTTCGGATTGATCCGACCTTTTTTGTGTGTGTGTTTGTGCCTGTAGCAAATCGGATGTTAATTGCTTGTTCGTATTTGATTTATGCGTATTTTGTCCTTTGGTTGAAATCGATCCGTTGTTTTTAATAATTTTGACATTGATTGGCAGATGTTGTTCGGGCTGCGGCAAGGTGCTTGGTCAGTTCTTTGGAGGAAAATTCATTGATCATAACAAACCTATACTCCGAACCGTCACCAAATTGAAGAAGAAGAAGAAGGAGAAGAAGCAGCAACTCGAGAAGATTGGAATGGATACTGCGAATCAACTCGCAACATAATTTTATTTCCACGGCAATTTTGACTAATACTGGACTTAAAATTCAACCATTATTTTAATTATTACTTTTTTCTTTTTTATCAAATCATTTTGAAAGAAACCGTTTTCTGAGATATTGATCATCTCTGGCGTTCTTTAATTCCAGTTTGGTGCTCATTTTGCTCACAATCAATAATGACTTTCTCCTAGAAATTGGAATAATTTCTTAACAAGAATGCATATTCGCCAACACTTATTGAAAACTTATTAGAATAGGAATCCCTCCCATGGAAAC

mRNA sequence

AATATTACGACCAACCTCACCAACACAAAACACACAACATTAATCAAATCAAATTAAAAAAAAAAAAAATATATATATATATATATATATATAATAATAATATGTCATCCAAACATTACCGAACATATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGACGGCTGCATCATTCTCACCCTCTACATTCCTGCTGAGGATTAGTGGGGAGAGGGCTTACAAGAACAGCAAGCACGCATGGCAGCGCTTTCACACGGAGTTTGAAATCCCATCAAACTGCGACACTGCCAAAATTACTGCCAAATACAAGGCCGGAGTCCTTCATGTCCTGCAACCGATATTATTGCAGGACAACCAGTCCAAGCCACACACAGAACAAACTGAGAAGCCAAATTTGGAACAAACAAACCAAACTACTAATTCCGCTGCTGCCATTACCAACGATGACGCACCACTTACAGACACTCCGAATATTAACAAGAAGCTTACAGTTCCGGCAGGACCACGCTTGAAGGAGGCACAAGCTTCGGTTCCTCCACGCTCCACTCAATGTTGCATTGTTCTCACTGCCTCATACACCGCCAACCCGATCGCTTCGATGACTTCATGTTGTTCGGGCTGCGGCAAGGTGCTTGGTCAGTTCTTTGGAGGAAAATTCATTGATCATAACAAACCTATACTCCGAACCGTCACCAAATTGAAGAAGAAGAAGAAGGAGAAGAAGCAGCAACTCGAGAAGATTGGAATGGATACTGCGAATCAACTCGCAACATAATTTTATTTCCACGGCAATTTTGACTAATACTGGACTTAAAATTCAACCATTATTTTAATTATTACTTTTTTCTTTTTTATCAAATCATTTTGAAAGAAACCGTTTTCTGAGATATTGATCATCTCTGGCGTTCTTTAATTCCAGTTTGGTGCTCATTTTGCTCACAATCAATAATGACTTTCTCCTAGAAATTGGAATAATTTCTTAACAAGAATGCATATTCGCCAACACTTATTGAAAACTTATTAGAATAGGAATCCCTCCCATGGAAAC

Coding sequence (CDS)

ATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGACGGCTGCATCATTCTCACCCTCTACATTCCTGCTGAGGATTAGTGGGGAGAGGGCTTACAAGAACAGCAAGCACGCATGGCAGCGCTTTCACACGGAGTTTGAAATCCCATCAAACTGCGACACTGCCAAAATTACTGCCAAATACAAGGCCGGAGTCCTTCATGTCCTGCAACCGATATTATTGCAGGACAACCAGTCCAAGCCACACACAGAACAAACTGAGAAGCCAAATTTGGAACAAACAAACCAAACTACTAATTCCGCTGCTGCCATTACCAACGATGACGCACCACTTACAGACACTCCGAATATTAACAAGAAGCTTACAGTTCCGGCAGGACCACGCTTGAAGGAGGCACAAGCTTCGGTTCCTCCACGCTCCACTCAATGTTGCATTGTTCTCACTGCCTCATACACCGCCAACCCGATCGCTTCGATGACTTCATGTTGTTCGGGCTGCGGCAAGGTGCTTGGTCAGTTCTTTGGAGGAAAATTCATTGATCATAACAAACCTATACTCCGAACCGTCACCAAATTGAAGAAGAAGAAGAAGGAGAAGAAGCAGCAACTCGAGAAGATTGGAATGGATACTGCGAATCAACTCGCAACATAA

Protein sequence

MKISNLRWSGRKRTAASFSPSTFLLRISGERAYKNSKHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQPILLQDNQSKPHTEQTEKPNLEQTNQTTNSAAAITNDDAPLTDTPNINKKLTVPAGPRLKEAQASVPPRSTQCCIVLTASYTANPIASMTSCCSGCGKVLGQFFGGKFIDHNKPILRTVTKLKKKKKEKKQQLEKIGMDTANQLAT

Homology

[Close]

BLAST of Lsi10G009300 vs. TrEMBL
Match: A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-17
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 163 CCSGCGKVLGQFFGGKFIDHNKPILRTVTKLKKKKKEKKQQLEKIGMDTANQLA 217
           CCSGCGKVLGQFFGGK+IDH+KPIL T TKLKK+KKEKKQQLEKI MDT +QLA
Sbjct: 21  CCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTTDQLA 74

[Close]

BLAST of Lsi10G009300 vs. TrEMBL
Match: A0A0A0L1N9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269140 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 25  LRISGERAYKNS-KHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQPILLQDNQSKPH 84
           LRISGERA KN+ KH  QRF+ EFEIPSNC+T  ITAKYK+G+LHV QP  LQ +QS   
Sbjct: 51  LRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGILHVRQP--LQQDQSDSK 110

Query: 85  TEQTEKPNLEQTNQTTNSAAAITNDDAPLTDTPNINKKLTVPAGPRLKE 133
            +    P LE  +Q        +N + P +DTP  ++K T   G RLKE
Sbjct: 111 QQPHHNPILE--DQKVKQTNLASNHNEPHSDTPKDDRKFTTSTGQRLKE 155

[Close]

BLAST of Lsi10G009300 vs. TrEMBL
Match: A0A0J8BYF2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171580 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 24 LLRISGERAYKNSKHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQP 73
          +L+ISGER    +K  W+RF+ EF +PSNCDT +ITAK++ G+L++ QP
Sbjct: 50 ILKISGERPIGENK--WRRFNKEFGVPSNCDTKEITAKFEGGILYIRQP 96

[Close]

BLAST of Lsi10G009300 vs. NCBI nr
Match: gi|659097901|ref|XP_008449876.1| (PREDICTED: uncharacterized protein LOC103491622 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 8.4e-18
Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 1


Query: 25  LRISGERAYK-NSKHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQPILLQDNQSKPH 84
           LRISGERA K N+KH  QRF+ EFEIPSNC+TA ITAKYK+G+LHV QP  LQ +QS   
Sbjct: 51  LRISGERALKSNNKHTMQRFYKEFEIPSNCNTANITAKYKSGILHVRQP--LQQDQSNSK 110

Query: 85  TEQTEKPNLE-QTNQTTNSAAAITNDDAPLTDTPNINKKLTVPAGPRLKE 133
            +    P LE Q  + TN A+   N + P +DTP  N KLT+  G RLKE
Sbjct: 111 QQPHHNPILEDQEIKQTNLAS---NHNEPHSDTPKNNGKLTISTGQRLKE 155

[Close]

BLAST of Lsi10G009300 vs. NCBI nr
Match: gi|700198874|gb|KGN54032.1| (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 7.1e-17
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 163 CCSGCGKVLGQFFGGKFIDHNKPILRTVTKLKKKKKEKKQQLEKIGMDTANQLA 217
           CCSGCGKVLGQFFGGK+IDH+KPIL T TKLKK+KKEKKQQLEKI MDT +QLA
Sbjct: 21  CCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTTDQLA 74

[Close]

BLAST of Lsi10G009300 vs. NCBI nr
Match: gi|449463865|ref|XP_004149651.1| (PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 25  LRISGERAYKNS-KHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQPILLQDNQSKPH 84
           LRISGERA KN+ KH  QRF+ EFEIPSNC+T  ITAKYK+G+LHV QP  LQ +QS   
Sbjct: 51  LRISGERALKNNNKHIMQRFNKEFEIPSNCNTTNITAKYKSGILHVRQP--LQQDQSDSK 110

Query: 85  TEQTEKPNLEQTNQTTNSAAAITNDDAPLTDTPNINKKLTVPAGPRLKE 133
            +    P LE  +Q        +N + P +DTP  ++K T   G RLKE
Sbjct: 111 QQPHHNPILE--DQKVKQTNLASNHNEPHSDTPKDDRKFTTSTGQRLKE 155

[Close]

BLAST of Lsi10G009300 vs. NCBI nr
Match: gi|697141864|ref|XP_009625047.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Nicotiana tomentosiformis])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 1


Query: 22  TFLLRISGERAYKNSKHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQPILLQDNQSK 81
           T +L+ISG+R    +K  WQRF  +F +  NCD +KI+AK++ G+LHV QP L+     K
Sbjct: 52  TGILKISGQRPIGQNK--WQRFQKDFPVAENCDKSKISAKFENGILHVKQPKLITSTLKK 111

Query: 82  -PHTEQTEKPNLEQTNQTTNSAAAITNDDAPLTDTPNINKKLTVPAGPRLKEAQASVPPR 141
                 +E  N     Q T+     T  D         N  +  PA    KE Q S  P+
Sbjct: 112 DKELRASEAENTTAKRQKTSLREEFTKQD---------NADINNPAKEPAKEEQDSTSPK 163

Query: 142 STQ 144
           +++
Sbjct: 172 TSE 163

[Close]

BLAST of Lsi10G009300 vs. NCBI nr
Match: gi|731348452|ref|XP_010685493.1| (PREDICTED: protein piccolo-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 24 LLRISGERAYKNSKHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQP 73
          +L+ISGER    +K  W+RF+ EF +PSNCDT +ITAK++ G+L++ QP
Sbjct: 50 ILKISGERPIGENK--WRRFNKEFGVPSNCDTKEITAKFEGGILYIRQP 96

The following BLAST results are available for this feature:

BLAST of Lsi10G009300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G009300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4_CUCSA	4.9e-17	85.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1	[more]
A0A0A0L1N9_CUCSA	2.4e-16	51.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269140 PE=3 SV=1	[more]
A0A0J8BYF2_BETVU	3.0e-06	53.06	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171580 PE=3 S...	[more]

BLAST of Lsi10G009300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G009300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097901\|ref\|XP_008449876.1\|	8.4e-18	56.36	PREDICTED: uncharacterized protein LOC103491622 [Cucumis melo]	[more]
gi\|700198874\|gb\|KGN54032.1\|	7.1e-17	85.19	hypothetical protein Csa_4G269150 [Cucumis sativus]	[more]
gi\|449463865\|ref\|XP_004149651.1\|	3.5e-16	51.38	PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus]	[more]
gi\|697141864\|ref\|XP_009625047.1\|	2.5e-06	33.33	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Nicotiana tomentosif...	[more]
gi\|731348452\|ref\|XP_010685493.1\|	4.3e-06	53.06	PREDICTED: protein piccolo-like [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009300.1	Lsi10G009300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 31..75 score: 7.
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 33..72 score: 1.
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 24..73 score: 1.3
None	No IPR available	unknown	Coil	Coil	coord: 187..210 scor
None	No IPR available	PANTHER	PTHR11527:SF156	HEAT SHOCK FAMILY PROTEIN	coord: 25..95 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G009300	Csa4G269140	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009300	CSPI04G12640	Wild cucumber (PI 183967)	cpilsiB245
Lsi10G009300	Cucsa.152830	Cucumber (Gy14) v1	cgylsiB245
Lsi10G009300	CmaCh02G011790	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009300	CmoCh02G012130	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009300	Cla003136	Watermelon (97103) v1	lsiwmB078
Lsi10G009300	MELO3C014715	Melon (DHL92) v3.5.1	lsimeB072
Lsi10G009300	ClCG02G024300	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G009300	MELO3C014715.2	Melon (DHL92) v3.6.1	lsimedB074
Lsi10G009300	Cla97C02G050550	Watermelon (97103) v2	lsiwmbB052
Lsi10G009300	Bhi10G000383	Wax gourd	lsiwgoB079
Lsi10G009300	Cp4.1LG05g05510	Cucurbita pepo (Zucchini)	cpelsiB598
Lsi10G009300	CsGy4G011620	Cucumber (Gy14) v2	cgyblsiB235
Lsi10G009300	Carg13969	Silver-seed gourd	carlsiB458
Lsi10G009300	CsaV3_4G017430	Cucumber (Chinese Long) v3	cuclsiB271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009300	Silver-seed gourd	carlsiB471
Lsi10G009300	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009300	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009300	Cucurbita pepo (Zucchini)	cpelsiB227