ClCG02G024300 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G024300
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 38565313 .. 38566023 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCACTAAGGACTCATCTTCCGCCCCCAATTACCAATACGTCACTCTCTTTCTGCTTCTTCACCTCAGTTCTCTGCAGGCAGAAGCTTCGGTTCCTCCACTCAATGCTGCATTGTTCTCACTGCCTCATTCACCGCCAACCCGATCGCTTCGATGACTTCATGTGAGAATCCGCTGCGATCATCTTCGCTATTGTGTTCTATCCTCTGCGCACATTGATCTCTTCATTGCTTCTCGTTTCTAATCTGATTTGTTCTTCGGATTGCTATTTCTTTTATTCTACCAGTAACTCGACTTTTTTTTTTTTCGTCATTGACCTAAAATGCCTGTAGCAATCGGATATTTATTGCTTGTTCGGATTTGATTTATGCGTATTCTGTCTCTTGCTTGGTTGAAATCGATCCGTTGTTTTTAATAGTTTTGGCATCGATTGGCAGATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAGCCGCCGCCAAATTGAAGAAGAGGAAGAAGGAGAAAAGGCAGCAACTCGTACTCGAGAAGATTGGAATAGATGCCGCGGATCAACTCGCCACATAACTTCTTTTCCACGGCAGTTTTGACTAATACTGATCTTAAACATCTTAAAACTCAACCATTATTTTAATTATTACCTTTTTTTCTTTTTCTTTTTTTTCA

mRNA sequence

GCGCACTAAGGACTCATCTTCCGCCCCCAATTACCAATACGTCACTCTCTTTCTGCTTCTTCACCTCAGTTCTCTGCAGGCAGAAGCTTCGGTTCCTCCACTCAATGCTGCATTGTTCTCACTGCCTCATTCACCGCCAACCCGATCGCTTCGATGACTTCATATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAGCCGCCGCCAAATTGAAGAAGAGGAAGAAGGAGAAAAGGCAGCAACTCGTACTCGAGAAGATTGGAATAGATGCCGCGGATCAACTCGCCACATAACTTCTTTTCCACGGCAGTTTTGACTAATACTGATCTTAAACATCTTAAAACTCAACCATTATTTTAATTATTACCTTTTTTTCTTTTTCTTTTTTTTCA

Coding sequence (CDS)

ATGCTGCATTGTTCTCACTGCCTCATTCACCGCCAACCCGATCGCTTCGATGACTTCATATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAGCCGCCGCCAAATTGAAGAAGAGGAAGAAGGAGAAAAGGCAGCAACTCGTACTCGAGAAGATTGGAATAGATGCCGCGGATCAACTCGCCACATAA

Protein sequence

MLHCSHCLIHRQPDRFDDFICCSGCGKVLGQFFGGKYIDHSKPILEAAAKLKKRKKEKRQQLVLEKIGIDAADQLAT

Homology

[Close]

BLAST of ClCG02G024300 vs. TrEMBL
Match: A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-29
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 1  MLHCSHCLIHRQPDRFDDFICCSGCGKVLGQFFGGKYIDHSKPILEAAAKLKKRKKEKRQ 60
          MLHCSHCL HR+PDRFDDF+CCSGCGKVLGQFFGGKYIDHSKPIL  A KLKKRKKEK+Q
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLVLEKIGIDAADQLA 77
          Q  LEKI +D  DQLA
Sbjct: 61 Q--LEKIRMDTTDQLA 74

[Close]

BLAST of ClCG02G024300 vs. NCBI nr
Match: gi|700198874|gb|KGN54032.1| (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-29
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 1  MLHCSHCLIHRQPDRFDDFICCSGCGKVLGQFFGGKYIDHSKPILEAAAKLKKRKKEKRQ 60
          MLHCSHCL HR+PDRFDDF+CCSGCGKVLGQFFGGKYIDHSKPIL  A KLKKRKKEK+Q
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLVLEKIGIDAADQLA 77
          Q  LEKI +D  DQLA
Sbjct: 61 Q--LEKIRMDTTDQLA 74

The following BLAST results are available for this feature:

BLAST of ClCG02G024300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4_CUCSA	1.5e-29	82.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1	[more]

BLAST of ClCG02G024300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198874\|gb\|KGN54032.1\|	2.2e-29	82.89	hypothetical protein Csa_4G269150 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G024300.1	ClCG02G024300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 45..65 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G024300	Csa4G269150	Cucumber (Chinese Long) v2	cuwcgB292
ClCG02G024300	Cla003136	Watermelon (97103) v1	wcgwmB197
ClCG02G024300	Cla97C02G050550	Watermelon (97103) v2	wcgwmbB138
ClCG02G024300	Bhi10G000383	Wax gourd	wcgwgoB283
ClCG02G024300	CSPI04G12650	Wild cucumber (PI 183967)	cpiwcgB303
ClCG02G024300	Cucsa.152840	Cucumber (Gy14) v1	cgywcgB258
ClCG02G024300	Lsi10G009300	Bottle gourd (USVL1VR-Ls)	lsiwcgB054
ClCG02G024300	CsGy4G011620	Cucumber (Gy14) v2	cgybwcgB271
ClCG02G024300	Carg13969	Silver-seed gourd	carwcgB0493
ClCG02G024300	CsaV3_4G017430	Cucumber (Chinese Long) v3	cucwcgB303

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G024300	Melon (DHL92) v3.6.1	medwcgB370
ClCG02G024300	Silver-seed gourd	carwcgB0503
ClCG02G024300	Cucurbita maxima (Rimu)	cmawcgB489
ClCG02G024300	Cucurbita maxima (Rimu)	cmawcgB541
ClCG02G024300	Cucurbita moschata (Rifu)	cmowcgB490
ClCG02G024300	Cucurbita moschata (Rifu)	cmowcgB538
ClCG02G024300	Melon (DHL92) v3.5.1	mewcgB376
ClCG02G024300	Cucurbita pepo (Zucchini)	cpewcgB255
ClCG02G024300	Cucurbita pepo (Zucchini)	cpewcgB644