CSPI04G12650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 11002633 .. 11003606 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAGAATTACGAACACATCTTCCGCCCCCAATTACCATTTCATCGTCACCTCCCTTTTTGCTTCCTCCCCTCGCTTCACTGCAGCCAAAAGCTTCGTTTCCTCCACCCTCCCACTCCCACTCAATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGAGAATCCGCTCCGATCCTCTTCGCTTTGGTGTTCTATCCTCTGCGCACATTGATCTCTCCATTGTTTCTCGTTTTTAATCTGATTTGTTCATCGGATTACTATTCCTCTAATTCTTACAGTAATCCGGTCTTTTTTTTCCTTTTTTTATTTCCTCTTTTATCTTTTTTTTGTACCGCGTCAGTGACGTAAAGAGCGTTTGGCAAATCGGATGTTTTTTTTGTACCTGTTTGTTCGTATTTGATTTATGCGTAATTTGTCTCTTGGTTGAATCGATTCGGTGTTTTTAATTGTTTTGGCATCGATTGATAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAATCTTTGACTAATACTGGACTTAAAACTCACCAATCTTTTTAAATTTCCACTCTTTCTTTTATATCAAATTCTTTTGAACGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACAGTTTGTTGCCCATTTTTGTCCACAATCAACAATTTCCTCTTAGAAATTGGAATCAATTTCCTGACAAATAATTCATATTTGGTATCACTGATTAAAAAATTTATCAGAACCGGAAGCAGAAGCAGATGCATGATTCCAATTTCAAAACAAGTTTATTACTTACTCGCTCATAGAAGTGG

mRNA sequence

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Coding sequence (CDS)

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Homology

[Close]

BLAST of CSPI04G12650 vs. TrEMBL
Match: A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]

BLAST of CSPI04G12650 vs. NCBI nr
Match: gi|700198874|gb|KGN54032.1| (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

The following BLAST results are available for this feature:

BLAST of CSPI04G12650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G12650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4_CUCSA	2.6e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1	[more]

BLAST of CSPI04G12650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G12650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198874\|gb\|KGN54032.1\|	3.7e-37	100.00	hypothetical protein Csa_4G269150 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12650.1	CSPI04G12650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..72 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G12650	Cla003136	Watermelon (97103) v1	cpiwmB353
CSPI04G12650	Csa4G269150	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G12650	ClCG02G024300	Watermelon (Charleston Gray)	cpiwcgB303
CSPI04G12650	CsaV3_4G017430	Cucumber (Chinese Long) v3	cpicucB221
CSPI04G12650	Bhi10G000383	Wax gourd	cpiwgoB394
CSPI04G12650	Cucsa.152840	Cucumber (Gy14) v1	cgycpiB225
CSPI04G12650	Cp4.1LG05g05510	Cucurbita pepo (Zucchini)	cpecpiB730
CSPI04G12650	CsGy4G011620	Cucumber (Gy14) v2	cgybcpiB175
CSPI04G12650	Carg13969	Silver-seed gourd	carcpiB0542

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G12650	Bottle gourd (USVL1VR-Ls)	cpilsiB245
CSPI04G12650	Melon (DHL92) v3.6.1	cpimedB283
CSPI04G12650	Silver-seed gourd	carcpiB0559
CSPI04G12650	Watermelon (97103) v2	cpiwmbB294
CSPI04G12650	Cucurbita maxima (Rimu)	cmacpiB554
CSPI04G12650	Cucurbita maxima (Rimu)	cmacpiB612
CSPI04G12650	Cucurbita moschata (Rifu)	cmocpiB543
CSPI04G12650	Cucurbita moschata (Rifu)	cmocpiB603
CSPI04G12650	Melon (DHL92) v3.5.1	cpimeB289
CSPI04G12650	Cucurbita pepo (Zucchini)	cpecpiB282