CsaV3_4G013220 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G013220
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Superoxide dismutase [Cu-Zn]
Location	chr4 : 9576323 .. 9582309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAAAAGTAGATTAGAGTTTATCTTGGTAGTTATGACGAGGACAACTGACATTAGTTTCAATGAAAAGGAAGAAGGAACCAAAAGAGGGGGAATTTTTTTGTTCTTTCTATTTTTTCGAGATCAATACAAAAGACAAAACATACCCATATAAGATTTCAAAGAAGCAGGTAATACGCAAACCGCTCATCGTTCGCTCACCCATTAACCGCTAAAATATTCAGTTAGGCGATAGCCTAGTAAAATGGGTGCTCTAAAAGCTGTGGTGCTCATCGCTGGAGGAGATTCCAACGTCAGAGGCACAATCCAGTTCGTCCAAGATTCAAATGGTCAGTTTCTGTATGTGGGTTTTTGTTTGCGATGCTTGTTTGAAGGGTTTTGTGTGGGATGCTTGTGTTTTTGCTTCGTTTGATCCAATTTCTCACAAGGGTTTTGGAGTTTCGAGGTGGGTTTTTATTGTTGATTGATGTTGTGATGAATATGAACAGGGGCAACCCATGTCAATGGAAGAATAAGCGGACTCTCTCCTGGACTCCATGGCTTCCATATCCATGCTCTTGGCGATACCACAAACGGCTGCAACTCCACTGGTAATCCCCCATTCCCTCTCTCTCTCTCTCTGCCATAGATTCATCTCTTTGTGCTGATTGAATAGGCTTTTTGTTTTGCTGGTTTTCTTTTTCTGTTAGGACCTCATTTTAATCCGTTGAAGAAGGACCATGGAAGTCCTGGGGATTCAGAACGTCATGTAGGGGATTTGGGGAATATCTATGCAGGTCCAGATGGTTAGTAGAGTTTCTACATTTTGGTTTTAGAATGTTCTTGAGAAACATAGACAGTAGATTTTTCTCTTCCTCTTATGTTTTTGCTCGTTTTGGTACTAAGAAGACGATTTGGTTGGCCACTGTTCGTGCTTCCTTTTGTAGCTTGTGGGGCGAAAGGAACAAACGTCTCTTTAATGATTATTTTTCCTCTTTTACTCGTTTAAACGAAGCATTCTTCCACTCATTTTAGTTTATCCTTTCTAGTCAGTAATTGACTTTCCCTCCTGTAACACCTTGTAATGTGTGGATCTGATTCTTTATCAATGGATTGTTTCTTCTACTAAAAAAAATTGTGACATTGTAGCAGTGGTTTGTTTCAGGGGTTGCTGAAGTTTCCATTTCGGATAGGCTGGTAAGTCTGTTAAATGGATTGTTTGTTTGCCGGTCCTTTTAAAGTGCTTCTTATTCAGTGAGTTGTTGTATCGGTCCTGCTTCTTCTTCATTTCGTTAATTGCCTATTGTGTTTATGAGTCACCTTTTGTCTTTTCAAATGCAATTTATTTTGATTATATAAGTTGTGGATTGTGTTTTTCATTTTGTTTTTCTATTTTGATGTGTAGATTTCACTTAAGGGACCTCATTCGGTAATTGGTCGGGCAGTCGTTGTGCACGCCGATCCTGATGATCTTGGCAAAGGTAAGAGTTTGTTTTGTACTGAGTTTATTCTATTCTACTTCTTAACATCCTGAAGTGGAAAACTTATTCAAAGTAATGCAGTTTCTCCACGCACTCAAAACACCTCGTCCGACTTTATTCGGGTTGATCATAGAATGAGAGTGTGAATTTGTATTGTCAGTCAGAAAGATTGTATTTGAATTATGATTTTATTATTGCTACTCATGTTTATTTCGTCTTTTCACATTTTGGCTTCATGGCTTAATCATACACACTAAATGCAATAGGTGGGCACGAACTTAGCAAGACAACTGGAAATGCCGGTGCAAGAATCGGATGCGGTTAGTATTTTATCCTCTACACTTGATTTTGGTTTGTCAATATAATAAATCCTTGAAAAGTAGCGGGGTGAAGTCGGATAGATTTGGCTCCAATAATCTATATTTGGTCACATGCCCCACAAAATAGTGAAGGTACAAGTCTCTGACAACACACTTCCGTGTCGTGAAAGGGAGAGTTCATGGGAAGTGAGCAACTGATAACCCCACAATAGGATATCAAGATCCACGTTATGATGCCTGTAAAGGACGCACCATTGCAGCCACAACTCAAAGGAAAAATTCATATGGATGATATTGGGTGTTAGCTCTCCCGAGCAAAATTTTCCTTGTGAAATCTTCACTTTCTTAGGTATCTTAATCTCCACAGGGCTTTTTGTTGAAGGATGCATGAATCATGATAGAAAAGTCATTCCTACTCCAAAGGATGCTCAATTTGGTAAGGTTGAGAAAATATTCACATAAGCTAAGACTAAGAGTAACCAGTAACATTTGAAGGTTGAAACTTGAAATCAAAAAACCTCGACAGTAGGTCTAAATATGGGGAAAACAAAATAATCCAATGATCTGATTAGTTCTTTAGTAGGAACCTTGACTAGTAAGTACCATAAATACCTGGTTCCTGAGAGGAAGACAATCAAATCTCACATGTAACCGCTGTTCTAACGAACCCTTTGGTCTTAGTTGAGGAGGTACTATCTAAAGAAAAACAAAATGTACCAATAACTTAGCGAAAGGATAAAAGAAAATAGAAAAGCTCTAGCGCCTCATCTCTTAGCTTTCCATGTAGAGCATGCAATATTGACATTTTCTTCCAATCAATGACCGGAGAAATTCAACCCGATTAAACTCCCATCAATATAATCAACACTCTTGTCAATGCACCCTTCAACGATGTGATCTATACCATGATATTATTGAAAATGGTTAGGATATTGTTGGACCTCCAATCATTTCGCCTACAAGAGGAAGAAATCAGTGAAGGTTATGATGGGAATTACACTGAAGACCAAGGGTGGGGAGGTTCTTGGGGAGACCCACCATTGATGAGGTATATAAGGAATGTTTTGGGGATCAGCAAATGAGGTCATATTTGAAGGATTAGCTAAGCATGCGCAGCGGAAAAAGACCACAAATAATATTCTAAATGCAATTGGTTAATACAAGCATAAAGCCCTAATTTAAAACGAATTTAGGGTAAATAGTAAACTTACATTCGAAACTCCGATTAATACTTGAATTTCCGACCGAACTCGAACAGGACCACTGCTAGTGTTAAGGCAGGGGCTTTGACTCCACTATGGTTATAGTGGACTGATTGAGCAAGTTTGCTCACTTCATGACACTTAAACACCTGTTTACTATGAAGCAAGTGGCAGAAGTTTTCATTGAGCGAGTAGTGAGTAAACATGGGATTCCAAAATAATCATCACAGATCGTGACAAAATATTTATGAGTAGTTTTTGGAAAGTGTTGTTCTCAACCATGGGTACCGTACTCAAGAAGCACAACTTTTCATCCTCAAAAAGATGGACAAACCAATCCTTGTTTAGAAACTTACCTTCGTTGTTTATGCACTGAGCAACCAACCAAGTGGAATAAGTGTATTCCTTAGACAAAATTGTGGTACAACACCATGTTTCATGGATCGGCAAAGACCACACTGTTCCAAATTGTCTTTGGAAGAACTCCACCCCCATTAGTGTCTTATGGACATAGGAAGACGACCAATAATAGCACGGAACAGCTGGTGATGGAAAGGGACTTGGTAATTAATACTCTAAAGGAAATTTGGTGATAGCCCAAAATAGAATGAAGAAGCAAGCTGATTTGCATCGAAGAGAGCTGGAATTTAAGGTAGGGGATGAAGTATATTTGAAGTTAAGGCCGTTATCACCAACGTTCGTTAGCACAGATGAAGAGTGGAAAATTAGCACCCAAGTTCTATGGGCCTTACAAAGTGATTGAATCTATTGGGAAAGTGGTGTATAGATTGGACCTACCTCCCAGAGCTTCAATTCACAATGTTTACACAGTTCTCAACCAAAACTTAAGTTGGGACAGACCCAGAAACTGCATCACCTACCACTGGCCTTAACAGAAAAATTTGAGCTGCAGGTGATACCCGAGACAGTCTTGGGAGTCTGATGGAGTAGTGAACTGGGGCCAATGAGTGGCTGGTGAAGTGGAAAGGATGTATAGAAAGTGAGACTATGTGGGAATCGGTTTATTTGATGAATCAACAGTTTCCCTTGTTCTGAGAACAAGGTACAGGTACACTTCGAACCAAGCGGTATTGTTAGACCTCCAATCATTTACACCTACCAGAGGAAGAAGTTGGGGAAGTGTATGATGGGAATTACAAAAAGGACCAAGGGTGGGGAGTTTCTTGGGGGGACCCACCCTGATGAGGTATGAGGAATATTTTGGGAATTAGCAAAGGTCATATTTTCGGTATAGGCTGTTGAGGTTTTTGAGGAGAAGATTCCAGCCTTCTTGAAGGAGCTGGAGAATAACCTTAGCATTTGTTTCTGTCTTTTCTTTCTTATTTTACTGTGCTGTCCTTTAGAGTATTCTGCTGATATTTTGTAAACTCATTTGGAATTTATCACCAATAGAATCAAAGCAGAGTACCGTTTCTGTTTCCATATTTTTGTTGGAATTTTACTCAGGGAAGGGATCCTAACATATACTTTCTAATAAGAACACTTAAGAAATACAAAGAACACTAAAGATAGAAATATATATTGCAATATCAATGAAAAAACTACAGTATAACATAGCCTCCTTTGAGAGAGTTGGTCTCTCCTAAATTCCCCTTAAAGAAATCCCAAAATTTCGTCACACCCTCCTCTCAATCCTACTCCCTCTGTTTATAACTAAAAGCCTTAACAAATTTACTATCTATGGACTGAAATGCTTCTTCTTATAACCATACTAAAATTCTCCAGTAATCCCACTTTATCTCTAACCAGTGCTCTCACAAAAGTATAATTTCATATTGAACTGACTTAATTAAAAAATTTGCTGTATTACCAGGGCATCGGATATGGATCGTAATTATAGTGAATAATGAATATGTAACTTTTCTTTAATTGGCCTTTGGCACTCCCATAAAGAAGGATTGGCGAATTTAGTGCTCGAGGATCATCCTTTCAAGGTTGAAAGGAAGTTTAATGGTTTGAAATGAACTTAGCTTTTAGTTGGGTCCTTTTGAGTGAATGCCATAATCAACTAAGACTTACAAGAAGTGTAGAAGCCCAAGTGGGTTTGGCGAAGTGGTATTGGTCATGATCTCCACTCTAGAAGTGGAAGGTTTAATCTAGAGGTTCAACCCACCATGCACGGTTGTTGTTCAGAAAAACATAGAGAAGCGTTTTCTTGGTTGTATATTGGTGTAAAAATGATCACATCATCAGAAGGTTTTCCCCACTGAAGATAGAGAAAAACAACAAAAATCCATTTTTGTTATTCTTGATACTACACTTATGGCTAATTGGAGAATCCTTTTGTAATGATCTTTGATGGGTCCAACCCTTTTATTTCATTTCATCATCCCAACCAACCTCATATATTATAAGCATTTTTCATATCCACCTCTCTTTCATCTTGACACTGGTTTTCAAAAAAGCACTAATTATTATGATAATGATCTCATTTTGGTTTAAAGCTACTGACCCATGTGAGGCCTTTTCGCATTAAAGCCATCTTCCCGTTAGACTCTCTTGTTCTTTTCATTTGTAGTTTTGTTATAATTTTTTCTTCTTCTTTTCTTGCTTATTGGGCAGGCATTATTGGAATTCAATCTTCTGTCTAAAGGCGATGGTTGAGCTGGAAAAATAAACAAGTAATTGAGAAAGATAATTTGTTAGATTCTCTCTCTCTCATTACTTGTTTAGTATTGTAGAACATGCAGTTATAATATGAAATTATTAATATCCAAATGTGAAGTGCCAAAGAAGAATCACTCATGGCTTTGAAAGCCATGCCACATGTTATATAAAATACTATAGTTATAAAAGATATGGTATAATTTTGTCACTCAGCCCCCGTTTGTCATTTTTTTTTCTTTTTTGCAAGGATATGAACTTCTTTGTGTTTTGGATTTCAAATATATGTAATTATTATTAAGGATAAAAAAAACATGTGCTATTTTAAAATATTACTTAAATACATTTTAATTTTAAAATAGCTTAATTTGGATTAGAG

mRNA sequence

ATGGGTGCTCTAAAAGCTGTGGTGCTCATCGCTGGAGGAGATTCCAACGTCAGAGGCACAATCCAGTTCGTCCAAGATTCAAATGGGGCAACCCATGTCAATGGAAGAATAAGCGGACTCTCTCCTGGACTCCATGGCTTCCATATCCATGCTCTTGGCGATACCACAAACGGCTGCAACTCCACTGGACCTCATTTTAATCCGTTGAAGAAGGACCATGGAAGTCCTGGGGATTCAGAACGTCATGTAGGGGATTTGGGGAATATCTATGCAGGTCCAGATGGGGTTGCTGAAGTTTCCATTTCGGATAGGCTGATTTCACTTAAGGGACCTCATTCGGTAATTGGTCGGGCAGTCGTTGTGCACGCCGATCCTGATGATCTTGGCAAAGGTGGGCACGAACTTAGCAAGACAACTGGAAATGCCGGTGCAAGAATCGGATGCGGCATTATTGGAATTCAATCTTCTGTCTAA

Coding sequence (CDS)

ATGGGTGCTCTAAAAGCTGTGGTGCTCATCGCTGGAGGAGATTCCAACGTCAGAGGCACAATCCAGTTCGTCCAAGATTCAAATGGGGCAACCCATGTCAATGGAAGAATAAGCGGACTCTCTCCTGGACTCCATGGCTTCCATATCCATGCTCTTGGCGATACCACAAACGGCTGCAACTCCACTGGACCTCATTTTAATCCGTTGAAGAAGGACCATGGAAGTCCTGGGGATTCAGAACGTCATGTAGGGGATTTGGGGAATATCTATGCAGGTCCAGATGGGGTTGCTGAAGTTTCCATTTCGGATAGGCTGATTTCACTTAAGGGACCTCATTCGGTAATTGGTCGGGCAGTCGTTGTGCACGCCGATCCTGATGATCTTGGCAAAGGTGGGCACGAACTTAGCAAGACAACTGGAAATGCCGGTGCAAGAATCGGATGCGGCATTATTGGAATTCAATCTTCTGTCTAA

Protein sequence

MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV

Homology

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BLAST of CsaV3_4G013220 vs. NCBI nr
Match: XP_004147539.1 (PREDICTED: superoxide dismutase [Cu-Zn] 2 [Cucumis sativus] >KGN53932.1 hypothetical protein Csa_4G192040 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 2.5e-84
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN
Sbjct: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV
Sbjct: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 157

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BLAST of CsaV3_4G013220 vs. NCBI nr
Match: XP_008441989.1 (PREDICTED: superoxide dismutase [Cu-Zn] 2 [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 8.9e-82
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           M ALKAVVLIAGGDSN+RGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN
Sbjct: 1   MSALKAVVLIAGGDSNIRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHG PGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHS+IGRAVV
Sbjct: 61  STGPHFNPLKKDHGGPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSIIGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHAD DDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VHADLDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 157

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BLAST of CsaV3_4G013220 vs. NCBI nr
Match: APO14278.1 (superoxide dismutase 2 [Luffa aegyptiaca])

HSP 1 Score: 305.8 bits (782), Expect = 8.3e-80
Identity = 144/157 (91.72%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MGALKAVVLI GGDSN++G+IQFVQDSNGATHV GRISGLSPGLHGFHIHALGDTTNGCN
Sbjct: 1   MGALKAVVLITGGDSNIKGSIQFVQDSNGATHVKGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHG+PGD ERH GDLGNIYAGPDGVAE+SI+DRLISLKGPHS++GRAVV
Sbjct: 61  STGPHFNPLKKDHGAPGDVERHAGDLGNIYAGPDGVAEISITDRLISLKGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHADPDDLGKGGHELSKTTGNAGAR+GCGIIGIQSSV
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARVGCGIIGIQSSV 157

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BLAST of CsaV3_4G013220 vs. NCBI nr
Match: XP_023521911.1 (superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >XP_023518071.1 superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 7.0e-79
Identity = 146/158 (92.41%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAV 120
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHS++GRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158

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BLAST of CsaV3_4G013220 vs. NCBI nr
Match: XP_022966470.1 (superoxide dismutase [Cu-Zn] 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 301.2 bits (770), Expect = 2.1e-78
Identity = 145/158 (91.77%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAV 120
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIY GPDGVAEVSI+DRLISLKGPHS++GRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158

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BLAST of CsaV3_4G013220 vs. TAIR10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3)

HSP 1 Score: 236.9 bits (603), Expect = 8.6e-63
Identity = 112/155 (72.26%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 2   GALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNS 61
           G L+AV LIA GD+NVRG +QFVQD +G THV G+ISGLSPG HGFHIH+ GDTTNGC S
Sbjct: 6   GNLRAVALIA-GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIS 65

Query: 62  TGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVV 121
           TGPHFNPL + HG P + ERH GDLGNI AG +GVAE+ I D+ I L G +S++GRAVVV
Sbjct: 66  TGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVV 125

Query: 122 HADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSS 157
           HADPDDLGKGGH+LSK+TGNAG+R+GCGIIG+QSS
Sbjct: 126 HADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQSS 159

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BLAST of CsaV3_4G013220 vs. TAIR10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1)

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-53
Identity = 96/147 (65.31%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 8   VLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNSTGPHFN 67
           V +      V GTI F Q+ +G T V+G +SGL PGLHGFH+HALGDTTNGC STGPHFN
Sbjct: 5   VAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFN 64

Query: 68  PLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVVHADPDD 127
           P  K HG+P D+ RH GDLGNI  G DG A  +I+D  I L GP+S++GRAVVVHADPDD
Sbjct: 65  PDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDD 124

Query: 128 LGKGGHELSKTTGNAGARIGCGIIGIQ 155
           LGKGGHELS  TGNAG R+ CGIIG+Q
Sbjct: 125 LGKGGHELSLATGNAGGRVACGIIGLQ 151

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BLAST of CsaV3_4G013220 vs. TAIR10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2)

HSP 1 Score: 172.2 bits (435), Expect = 2.6e-43
Identity = 82/121 (67.77%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 33  VNGRISGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAG 92
           VN RI+GL+PG HGFH+H  GDTTNGC STGPHFNP    HG+P D  RH GDLGNI A 
Sbjct: 93  VNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINAN 152

Query: 93  PDGVAEVSISDRLISLKGPHSVIGRAVVVHADPDDLGKGGHELSKTTGNAGARIGCGIIG 152
            DGVAE +I D  I L GP+SV+GRA VVH   DDLGKGGHELS TTGNAG R+ CG+IG
Sbjct: 153 ADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIG 212

Query: 153 I 154
           +
Sbjct: 213 L 213

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BLAST of CsaV3_4G013220 vs. TAIR10
Match: AT1G12520.1 (copper chaperone for SOD1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-10
Identity = 41/128 (32.03%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 16  NVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGS 75
           ++ G ++F Q S     +    +GLSPG H + I+  GD TNG  STG  +NP +   G+
Sbjct: 172 DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 231

Query: 76  PGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVVHADPDDLGKGGHEL 135
                  +GDLG + A  +G A  S     + +     +IGRAVVV+   D+    G   
Sbjct: 232 -----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDNKSGPGLTA 291

Query: 136 SKTTGNAG 144
           +    +AG
Sbjct: 292 AVIARSAG 291

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BLAST of CsaV3_4G013220 vs. Swiss-Prot
Match: sp|O49044|SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-65
Identity = 117/157 (74.52%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MG +KAV +I  G++NV+G++QF+QDS G THV GRI+GL+PGLHGFHIHALGDTTNGCN
Sbjct: 1   MGVIKAVAVI-NGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHG+P D+ERH GDLGN+ AG DGVAEVS+ D  I L G HS++GRAVV
Sbjct: 61  STGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHAD DDLG+ GHELSKTTGNAGAR+ CGIIG+Q+SV
Sbjct: 121 VHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQASV 156

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BLAST of CsaV3_4G013220 vs. Swiss-Prot
Match: sp|Q9FK60|SODC3_ARATH (Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana OX=3702 GN=CSD3 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.6e-61
Identity = 112/155 (72.26%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 2   GALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNS 61
           G L+AV LIA GD+NVRG +QFVQD +G THV G+ISGLSPG HGFHIH+ GDTTNGC S
Sbjct: 6   GNLRAVALIA-GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIS 65

Query: 62  TGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVV 121
           TGPHFNPL + HG P + ERH GDLGNI AG +GVAE+ I D+ I L G +S++GRAVVV
Sbjct: 66  TGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVV 125

Query: 122 HADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSS 157
           HADPDDLGKGGH+LSK+TGNAG+R+GCGIIG+QSS
Sbjct: 126 HADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQSS 159

[Close]

BLAST of CsaV3_4G013220 vs. Swiss-Prot
Match: sp|P24669|SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris OX=3349 GN=SODCC PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-59
Identity = 105/154 (68.18%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MG LKAVV++  G ++V+G +QF Q+ +G T V G+ISGLSPGLHGFH+HALGDTTNGC 
Sbjct: 1   MGLLKAVVVL-NGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCM 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPL K+HG+P D  RH GDLGN+  G DG  E SI+D  I L GPHS++GRAVV
Sbjct: 61  STGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 155
           VHADPDDLGKGGHELSK+TGNAG R+ CG++G+Q
Sbjct: 121 VHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQ 153

[Close]

BLAST of CsaV3_4G013220 vs. Swiss-Prot
Match: sp|P11428|SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays OX=4577 GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 8.0e-58
Identity = 106/151 (70.20%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 4   LKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNSTG 63
           +KAV ++AG D  V+GTI F Q+ +G T V G ISGL PGLHGFH+HALGDTTNGC STG
Sbjct: 2   VKAVAVLAGTD--VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 61

Query: 64  PHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVVHA 123
           PHFNP+ K+HG+P D +RH GDLGN+ AG DGV  V+I+D  I L GPHS+IGRAVVVHA
Sbjct: 62  PHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHA 121

Query: 124 DPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 155
           DPDDLGKGGHELSK+TGNAG R+ CGIIG+Q
Sbjct: 122 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 150

[Close]

BLAST of CsaV3_4G013220 vs. Swiss-Prot
Match: sp|P28757|SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 6.8e-57
Identity = 105/151 (69.54%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 4   LKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNSTG 63
           +KAV ++A  +  V+GTI F Q+ +G T V G +SGL PGLHGFH+HALGDTTNGC STG
Sbjct: 2   VKAVAVLASSE-GVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 61

Query: 64  PHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVVHA 123
           PHFNP  K+HG+P D  RH GDLGNI AG DGVA V++SD  I L G HS+IGRAVVVHA
Sbjct: 62  PHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHA 121

Query: 124 DPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 155
           DPDDLGKGGHELSKTTGNAG R+ CGIIG+Q
Sbjct: 122 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of CsaV3_4G013220 vs. TrEMBL
Match: tr|A0A0A0KZZ1|A0A0A0KZZ1_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_4G192040 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.7e-84
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN
Sbjct: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV
Sbjct: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 157

[Close]

BLAST of CsaV3_4G013220 vs. TrEMBL
Match: tr|A0A1S3B5B1|A0A1S3B5B1_CUCME (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103485986 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.9e-82
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           M ALKAVVLIAGGDSN+RGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN
Sbjct: 1   MSALKAVVLIAGGDSNIRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHG PGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHS+IGRAVV
Sbjct: 61  STGPHFNPLKKDHGGPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSIIGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHAD DDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VHADLDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 157

[Close]

BLAST of CsaV3_4G013220 vs. TrEMBL
Match: tr|A0A1L5JHV2|A0A1L5JHV2_LUFAE (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.5e-80
Identity = 144/157 (91.72%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MGALKAVVLI GGDSN++G+IQFVQDSNGATHV GRISGLSPGLHGFHIHALGDTTNGCN
Sbjct: 1   MGALKAVVLITGGDSNIKGSIQFVQDSNGATHVKGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHG+PGD ERH GDLGNIYAGPDGVAE+SI+DRLISLKGPHS++GRAVV
Sbjct: 61  STGPHFNPLKKDHGAPGDVERHAGDLGNIYAGPDGVAEISITDRLISLKGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHADPDDLGKGGHELSKTTGNAGAR+GCGIIGIQSSV
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARVGCGIIGIQSSV 157

[Close]

BLAST of CsaV3_4G013220 vs. TrEMBL
Match: tr|A0A023PRR8|A0A023PRR8_BETPL (CuZn superoxide dismutase (Fragment) OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 4.0e-70
Identity = 127/157 (80.89%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60
           MGA KAVVLI+ G+SN+RG++QF+++ NGATHV GRI+GLSPGLHGFHIHA GDTTNGCN
Sbjct: 1   MGAPKAVVLIS-GNSNIRGSVQFIEEPNGATHVKGRITGLSPGLHGFHIHAFGDTTNGCN 60

Query: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120
           STGPHFNPLKKDHG+P D ERH GDLGNI+AGPDGVAE+SI+D+ I L GPHS++GRAVV
Sbjct: 61  STGPHFNPLKKDHGAPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           VHADPDDLG GGHELSKTTGNAGAR+GCGIIG+QSSV
Sbjct: 121 VHADPDDLGSGGHELSKTTGNAGARVGCGIIGLQSSV 156

[Close]

BLAST of CsaV3_4G013220 vs. TrEMBL
Match: tr|A0A1R3JCN0|A0A1R3JCN0_COCAP (Superoxide dismutase [Cu-Zn] OS=Corchorus capsularis OX=210143 GN=CCACVL1_06811 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.3e-69
Identity = 127/156 (81.41%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 2   GALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCNS 61
           G LKAV LI GGD+NVRG++QF Q  NG THV G+I+GLSPGLHGFHIHALGDTTNGCNS
Sbjct: 7   GTLKAVALITGGDNNVRGSLQFTQIPNGITHVKGKITGLSPGLHGFHIHALGDTTNGCNS 66

Query: 62  TGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVVV 121
           TGPHFNPLKKDHG+P D ERH GDLGNI AGPDGVAEVSI D  I L G HS++GRAVVV
Sbjct: 67  TGPHFNPLKKDHGAPSDGERHAGDLGNIIAGPDGVAEVSIKDWQIPLSGQHSILGRAVVV 126

Query: 122 HADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158
           HADPDDLG+GGHELSKTTGNAGAR+GCGIIG+QSSV
Sbjct: 127 HADPDDLGRGGHELSKTTGNAGARVGCGIIGLQSSV 162

The following BLAST results are available for this feature:

BLAST of CsaV3_4G013220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147539.1	2.5e-84	100.00	PREDICTED: superoxide dismutase [Cu-Zn] 2 [Cucumis sativus] >KGN53932.1 hypothet...	[more]
XP_008441989.1	8.9e-82	96.82	PREDICTED: superoxide dismutase [Cu-Zn] 2 [Cucumis melo]	[more]
APO14278.1	8.3e-80	91.72	superoxide dismutase 2 [Luffa aegyptiaca]	[more]
XP_023521911.1	7.0e-79	92.41	superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >XP_023518071.1...	[more]
XP_022966470.1	2.1e-78	91.77	superoxide dismutase [Cu-Zn] 2-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G013220 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18100.1	8.6e-63	72.26	copper/zinc superoxide dismutase 3	[more]
AT1G08830.1	2.1e-53	65.31	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	2.6e-43	67.77	copper/zinc superoxide dismutase 2	[more]
AT1G12520.1	3.8e-10	32.03	copper chaperone for SOD1	[more]

BLAST of CsaV3_4G013220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49044\|SODC2_MESCR	1.4e-65	74.52	Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
sp\|Q9FK60\|SODC3_ARATH	1.6e-61	72.26	Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana OX=3702 GN=CSD3 PE=1 SV=1	[more]
sp\|P24669\|SODC_PINSY	1.9e-59	68.18	Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris OX=3349 GN=SODCC PE=2 SV=1	[more]
sp\|P11428\|SODC2_MAIZE	8.0e-58	70.20	Superoxide dismutase [Cu-Zn] 2 OS=Zea mays OX=4577 GN=SODCC.1 PE=2 SV=2	[more]
sp\|P28757\|SODC2_ORYSJ	6.8e-57	69.54	Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SODCC...	[more]

BLAST of CsaV3_4G013220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZZ1\|A0A0A0KZZ1_CUCSA	1.7e-84	100.00	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_4G192040 PE=3 SV=...	[more]
tr\|A0A1S3B5B1\|A0A1S3B5B1_CUCME	5.9e-82	96.82	Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103485986 PE=3 SV=1	[more]
tr\|A0A1L5JHV2\|A0A1L5JHV2_LUFAE	5.5e-80	91.72	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
tr\|A0A023PRR8\|A0A023PRR8_BETPL	4.0e-70	80.89	CuZn superoxide dismutase (Fragment) OS=Betula platyphylla OX=78630 PE=2 SV=1	[more]
tr\|A0A1R3JCN0\|A0A1R3JCN0_COCAP	3.3e-69	81.41	Superoxide dismutase [Cu-Zn] OS=Corchorus capsularis OX=210143 GN=CCACVL1_06811 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR036423	SOD-like_Cu/Zn_dom_sf
IPR001424	SOD_Cu_Zn_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006801	superoxide metabolic process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0071486	cellular response to high light intensity
biological_process	GO:0071457	cellular response to ozone
biological_process	GO:0071472	cellular response to salt stress
biological_process	GO:0071493	cellular response to UV-B
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005773	vacuole
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G013220.1	CsaV3_4G013220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 82..91 score: 74.23 coord: 101..123 score: 60.33 coord: 126..152 score: 71.55 coord: 46..68 score: 76.65
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 14..151 e-value: 2.0E-49 score: 167.3
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 5..148 e-value: 9.91916E-60 score: 183.231
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	G3DSA:2.60.40.200		coord: 3..155 e-value: 1.4E-62 score: 212.4
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	SSF49329	Cu,Zn superoxide dismutase-like	coord: 6..153
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 3..157
None	No IPR available	PANTHER	PTHR10003:SF31	SUPEROXIDE DISMUTASE CU-ZN 3	coord: 3..157
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 140..151
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 46..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G013220	CSPI04G11190	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G013220	CmaCh07G011610	Cucurbita maxima (Rimu)	cmacucB1017
CsaV3_4G013220	CmoCh07G012080	Cucurbita moschata (Rifu)	cmocucB1000
CsaV3_4G013220	Cp4.1LG19g02010	Cucurbita pepo (Zucchini)	cpecucB0612
CsaV3_4G013220	CsGy4G010750	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G013220	Carg12602	Silver-seed gourd	carcucB0313
CsaV3_4G013220	Cla012125	Watermelon (97103) v1	cucwmB356
CsaV3_4G013220	MELO3C008809	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G013220	ClCG04G005370	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G013220	MELO3C008809.2	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G013220	Cla97C04G071940	Watermelon (97103) v2	cucwmbB309
CsaV3_4G013220	Bhi03G001844	Wax gourd	cucwgoB410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G013220	Silver-seed gourd	carcucB0662
CsaV3_4G013220	Cucurbita maxima (Rimu)	cmacucB0792
CsaV3_4G013220	Cucurbita moschata (Rifu)	cmocucB0774
CsaV3_4G013220	Cucurbita pepo (Zucchini)	cpecucB0085
CsaV3_4G013220	Cucurbita pepo (Zucchini)	cpecucB0083
CsaV3_4G013220	Bottle gourd (USVL1VR-Ls)	cuclsiB280