CmaCh07G011610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G011610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Superoxide dismutase [Cu-Zn]
Location	Cma_Chr07 : 6367145 .. 6370862 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTCCATTTTGAAGGGATTTGCCTTATTTTCCGTTTGGGAATATAAAAACAGAACAAAACAGAACGCACCCATTTACTTTAAGGGCCCACAGATATAGAAACCGCTCATAGTCTCCACTCGTTCATCAATTAACCGCTAAATCTTCAGTCAGGCGATAGACGAGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGTCTGTTTCTCTATGTGGGTTTTTGAATTCGATGATTGTTTTTGGTTCTTCTGCGCCCATTTTTCATAGGGTTTTTGTAATCGATGCTTGTTTTTTGTTCTTCTGCGCCCATTTTTCAAAGGGTTTTGAATGCGATGATTGTTCTTGCTTGTTTTTGCACTTATTTCTGAAAGGTTTTGTGTGCGATGCTTGTTTTTGCTTCTTTTGCGCTCATTTCTTGTAGGGTTTTTGATAAACATGAACAGGGGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGCGATACCACAAATGGCTGCAACTCCACTGGTAATCCCTCTCTTTTTCTGCCCTAATTTCGCCTCGTTCCATTGGTTGAATCGATTTTTTCTTTGTTAGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGTAGGCCCTGATGGTTAGTAGAGTTTCTACTTTTTTTCCATTGGAATGTTCTTGAGCTCCTCGTATGACATTTTAGCTGTGGGATGTTTTAGGGGTTGCTGAAGTTTCCATTACCGATAGGCTGGTAAGTTTGCTAATCCTTATAGACTGCTTCTTATTCAGTGAGTTGTGCTTATGCGAGCCACTGTTGGGCTTCTAATTTGCATTTGTTCTTTGTGATGTGAGTTGTGGATTATATTTTCGTTGTTGTTCTTGTGTTTTGATGTGTAGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCTGTTGTTGTGCATGCTGATCCCGATGATCTTGGCAAGGGTAAGAGTTTGTTCTATTCTACATGGTCTTTAAGCCTTCAAACGGCATGAGTCTAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGGTTCCCCTCAAGGTTTTTAAAATGCGTCTGCTAGAGAGAGGTTTCCACACCCTTATAAAGTATGCTTCGTTCTCCTCTCCAACTGATGTGGGATCTCACAATCCAGCCCCCCTTCAGGGACCAACGTCCTCGCTGGTACTCATTCCTCTCTCCAATCAATGTGGGATCTCACAATCTATCCTCTTTAGGGCCCAGCATCCTTGTTGGCACACCGCCCGGTGTCTACCCCTTTTGGGGCTCAATGTCCTCGCTGGGACACCACCTGGTGTCTTACTCTGATACCATTTGTAACAGACCAAACCCACCACTAGTAGATATTATCTTCTATGGGCTTTCCCTTTTGGGCTTCCCCTCAAGGTTTTTAAAACGTGTCTGCTAGGGAGAGATTTTCACACCCTTGTGAAGAGTGCTTCGTTCCCCTCTCCAACGGATGTGGGATCTCACACAAACGTTCTGTACTGTTCTTGTGATTAGGATAAAATAGCCCCATTGGAGCTGTGTTACCTATCATCTCTTGATAAATTATTTAATAACCAGACAGGGACATGTCTTTTATCATTTACCTTAATGATGTTTGTAGCGATCTTTTGTGTGATAAAGAACATCGAACAAGAGCGACCTATTAAACACATATTTATAGGTTCCAAGGACCCACTTCTTTAGTTTGTTGATAATCGAATGAGTATCACTTTCTATTGTCAGTTTGAAAGATTATGTTTGATTTGTCGTTCACGTTCATTTCGTCTATTCATTGTTGCCTTTTGGCTTAATCGTACATGTTAAATGCAATAGGCGGGCATGAACTCAGCAAGACGACGGGAAACGCTGGTGCAAGAATCGGATGCGGTTAGTATGCAAATCCTCTACATATTTGGTTTTGGTTTTTAGGTCATAACATAATGAGTCGTAAAAAATAGTGGGGACGAGATAGGGTGGATTTAGCATGAATATTTGTTGTAATGCTGCAATTTGAAGTGCTACATGATGATGATATGCTCCATCTCTATTGAAATGAAAGATGTTATTTTAGGTTTATTTTCTTTAAAGACAACTTGGTTTGGATCAAATTTTTCTTTAAAAAAGGAGATGCTTATAAAGGGAGGAATATAAGCATTCCACCATTGGGTTTTCCCTTTCGGGCATCCTCTCAAAGTTTTAAAACACGTAGGGAGAGGTTTCCACATTCTTATAAGGAATGCTTTGTTCCCCTCTCTAACCGGTGTGAGATCTCACAATCCAACCCCCTTAAGGGCCCAGCGTCCTTGCTGGCACACCGCTTGGTGTCTGGCTCTGATACCATTTGTAACAACCCAAGCCCACCGCTAGTAGATATTGTCTTCTCTGTTAGGGAGAGGTGTTCACACCCTCATAAGTAATGTTTCGTTCCCATCTCCAACCGATGTGGGATCTTGCACTAAATTAATAGGTATAGGCATATGGCATATGGCATATGGCATGAACATAAGTTTTGATTATAAGATGTTTGATCACTTGAGAAAAATGAAAGAGAATGGTGAGAAGCAGATGGAAAGAAGGATGAAAAGAAATGGGCGGGGCGGAGGTGAAGAAACTAACAAAGGTACTGATAGATCGAGAAAAAAACTAGTGAAGTTCTTTGACGAGCAAAGCCATTCCTAACCCGAAGAAGCCTCAATTTGGTCTTGTCGAGAAAAGATTCACATAACTTAGAGAGTAGGCAATGACCTACCTTTAATGGTTGAGACTCAAAAGCAAGAAATCGAGGCAAACCTTAGGCAATAGAGCATGTAGGGCATGCGATATCGATATTGCCTTCCCATCGATGAAACACTTTAATAAACGCATAAGGGAAGGGAAGGGAAGCACGGAAAATCATGATGAAGATAGCGGAGGCCCGGACCGTAAGTAGGGATTTTGGGTGATAGAGAATATGTTATGTTGTTCCTAAATTATAGAACTAAGCATTTTGTACCCTTGTGGTTTTATTGTACAGTTTTTGGAAGTTTTGCTTGATTGTTGAGCAGGCATTATTGGGATCCAATCCTCTGTTTAAAGGTTGGCTGTGCTGGAACCCTCTCTCTCTCTCTCTCTCTGTTTCTTTCCTTTTTGTTCTGTACAAATAAATAAGCATCACTCATGGCTTTATAAAACTTCTAATTCCTTCTTTTACATCTTCAAGTTATTACGAGTTAGGTATGTGAAAATAGGCCGAGTTTGAGTTTTATGGCTGGAAATGTTCAATTCGTCGTTCAAGTAAGAATCGTATTATAATATTGTCGACGAGACTAGTTATTCACTAAATGACATGATAATTTTTGGGTAGTTGAACGTTGGATGTTGAAGGTAAAATCATGAACACCGACCATCGACAATGATGGTTGTGCTTATAACTTGCTTGCAATATATTCCTCCGTCCTTTGGGGAGGTTTTGGATCGTCCTCCCAACCAAAGTTATGAAAGGAAATATGTTGACATATCCTATGATCTCTATCATTGATTCATAACATGAGATCACGACGATTCTTCCTACCAAGGTGTGTACATGGAC

mRNA sequence

AAACTCCATTTTGAAGGGATTTGCCTTATTTTCCGTTTGGGAATATAAAAACAGAACAAAACAGAACGCACCCATTTACTTTAAGGGCCCACAGATATAGAAACCGCTCATAGTCTCCACTCGTTCATCAATTAACCGCTAAATCTTCAGTCAGGCGATAGACGAGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGGGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGCGATACCACAAATGGCTGCAACTCCACTGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGTAGGCCCTGATGGGGTTGCTGAAGTTTCCATTACCGATAGGCTGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCTGTTGTTGCGGGCATGAACTCAGCAAGACGACGGGAAACGCTGGTGCAAGAATCGGATGCGTTTTTGGAAGTTTTGCTTGATTGTTGAGCAGGCATTATTGGGATCCAATCCTCTGTTTAAAGGTTGGCTGTGCTGGAACCCTCTCTCTCTCTCTCTCTCTGTTTCTTTCCTTTTTGTTCTGTACAAATAAATAAGCATCACTCATGGCTTTATAAAACTTCTAATTCCTTCTTTTACATCTTCAAGTTATTACGAGTTAGGTATGTGAAAATAGGCCGAGTTTGAGTTTTATGGCTGGAAATGTTCAATTCGTCGTTCAAGTAAGAATCGTATTATAATATTGTCGACGAGACTAGTTATTCACTAAATGACATGATAATTTTTGGGTAGTTGAACGTTGGATGTTGAAGGTAAAATCATGAACACCGACCATCGACAATGATGGTTGTGCTTATAACTTGCTTGCAATATATTCCTCCGTCCTTTGGGGAGGTTTTGGATCGTCCTCCCAACCAAAGTTATGAAAGGAAATATGTTGACATATCCTATGATCTCTATCATTGATTCATAACATGAGATCACGACGATTCTTCCTACCAAGGTGTGTACATGGAC

Coding sequence (CDS)

ATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGGGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGCGATACCACAAATGGCTGCAACTCCACTGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGTAGGCCCTGATGGGGTTGCTGAAGTTTCCATTACCGATAGGCTGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCTGTTGTTGCGGGCATGAACTCAGCAAGACGACGGGAAACGCTGGTGCAAGAATCGGATGCGTTTTTGGAAGTTTTGCTTGATTGTTGA

Protein sequence

MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVVAGMNSARRRETLVQESDAFLEVLLDC

Homology

[Close]

BLAST of CmaCh07G011610 vs. Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-48
Identity = 91/121 (75.21%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MG +KAVA+I G  ++NVKGS+QF+QDS G THV GR++GL+PGLHGFHIHALGDTTNGC
Sbjct: 1   MGVIKAVAVING--NNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAP D+ERHAGDLGN+  G DGVAEVS+ D  I L G HSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-41
Identity = 82/121 (67.77%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MG LKAV ++ G   ++VKG +QF Q+ +G T V G++SGLSPGLHGFH+HALGDTTNGC
Sbjct: 1   MGLLKAVVVLNGA--ADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
            STGPHFNPL K HGAP D  RHAGDLGN+ VG DG  E SITD  I L GPHSI+GRAV
Sbjct: 61  MSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. Swiss-Prot
Match: SODC3_ARATH (Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana GN=CSD3 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-40
Identity = 80/120 (66.67%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 2   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 61
           G L+AVALI G +  NV+G +QFVQD +G THV G++SGLSPG HGFHIH+ GDTTNGC 
Sbjct: 6   GNLRAVALIAGDN--NVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCI 65

Query: 62  STGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 121
           STGPHFNPL + HG P + ERHAGDLGNI  G +GVAE+ I D+ I L G +SILGRAVV
Sbjct: 66  STGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVV 123

[Close]

BLAST of CmaCh07G011610 vs. Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 9.9e-39
Identity = 78/118 (66.10%), Postives = 91/118 (77.12%), Query Frame = 1


Query: 4   LKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNST 63
           +KAVA++ G D   VKG+I F Q+ +G T V G +SGL PGLHGFH+HALGDTTNGC ST
Sbjct: 2   VKAVAVLAGTD---VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMST 61

Query: 64  GPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 122
           GPHFNP+ K HGAP D +RHAGDLGN+  G DGV  V+ITD  I L GPHSI+GRAVV
Sbjct: 62  GPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVV 116

[Close]

BLAST of CmaCh07G011610 vs. Swiss-Prot
Match: ALL5B_OLEEU (Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 4   LKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNST 63
           +KAV ++   +   V G++ F Q+ +G T V G LSGL PGLHGFH+HALGDTTNGC ST
Sbjct: 2   VKAVTVLNSSE--GVTGTVYFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMST 61

Query: 64  GPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 122
           GPHFNP+ K HGAPGD  RHAGDLGNI VG DG A ++I D+ I L GPHSI+GRAVV
Sbjct: 62  GPHFNPVGKEHGAPGDENRHAGDLGNITVGEDGTAAINIVDKQIPLTGPHSIIGRAVV 117

[Close]

BLAST of CmaCh07G011610 vs. TrEMBL
Match: A0A0A0KZZ1_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_4G192040 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.8e-56
Identity = 108/121 (89.26%), Postives = 116/121 (95.87%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIY GPDGVAEVSI+DRLISLKGPHS++GRAV
Sbjct: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAV 120

Query: 121 V 122
           V
Sbjct: 121 V 120

[Close]

BLAST of CmaCh07G011610 vs. TrEMBL
Match: A0A023PRR8_BETPL (CuZn superoxide dismutase (Fragment) OS=Betula platyphylla PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-48
Identity = 94/121 (77.69%), Postives = 108/121 (89.26%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPGLHGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGLHGFHIHAFGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAP D ERHAGDLGNI+ GPDGVAE+SITD+ I L GPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. TrEMBL
Match: A0A0H4CUN7_BETPL (Superoxide dismutase [Cu-Zn] OS=Betula platyphylla GN=SOD2 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-47
Identity = 92/121 (76.03%), Postives = 106/121 (87.60%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPG HGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGFHGFHIHAFGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG P D ERHAGDLGNI+ GPDGVAE+SITD+ I L GPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGGPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. TrEMBL
Match: A0A059DI16_EUCGR (Superoxide dismutase [Cu-Zn] OS=Eucalyptus grandis GN=EUGRSUZ_A02107 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 96/121 (79.34%), Postives = 103/121 (85.12%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           M  +KAVALI G   ++V+GS+QF+Q  NGATHV GR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSGVKAVALIIGD--ASVRGSLQFLQQPNGATHVKGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKKNHGAP DSERHAGDLGNI  GPDGVAEVSI D  I L G HSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPADSERHAGDLGNIVAGPDGVAEVSIVDVQIPLTGQHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. TrEMBL
Match: B9IPR0_POPTR (Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=POPTR_0019s05140g PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.6e-46
Identity = 95/120 (79.17%), Postives = 105/120 (87.50%), Query Frame = 1


Query: 2   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 61
           G++KAVALITG   SNV+GS+ F+Q+ NGATHV GR++GLSPGLHGFHIHALGDTTNGCN
Sbjct: 4   GSVKAVALITGD--SNVRGSLHFIQEPNGATHVTGRIAGLSPGLHGFHIHALGDTTNGCN 63

Query: 62  STGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 121
           STGPHFNPLKK+HGAP D+ERHAGDLGNI  G DGVAEVSITD  I L G HSILGRAVV
Sbjct: 64  STGPHFNPLKKDHGAPCDNERHAGDLGNIIAGSDGVAEVSITDFQIPLSGMHSILGRAVV 121

[Close]

BLAST of CmaCh07G011610 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-41
Identity = 80/120 (66.67%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 2   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 61
           G L+AVALI G +  NV+G +QFVQD +G THV G++SGLSPG HGFHIH+ GDTTNGC 
Sbjct: 6   GNLRAVALIAGDN--NVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCI 65

Query: 62  STGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 121
           STGPHFNPL + HG P + ERHAGDLGNI  G +GVAE+ I D+ I L G +SILGRAVV
Sbjct: 66  STGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVV 123

[Close]

BLAST of CmaCh07G011610 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-36
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 5   KAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTG 64
           K VA++   +   V G+I F Q+ +G T V+G +SGL PGLHGFH+HALGDTTNGC STG
Sbjct: 3   KGVAVLNSSE--GVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 62

Query: 65  PHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 122
           PHFNP  K HGAP D+ RHAGDLGNI VG DG A  +ITD  I L GP+SI+GRAVV
Sbjct: 63  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVV 117

[Close]

BLAST of CmaCh07G011610 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-33
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 1


Query: 3   ALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNS 62
           A KAVA++ G   S+V+G +   QD +G T VN R++GL+PG HGFH+H  GDTTNGC S
Sbjct: 64  AKKAVAVLKGT--SDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCIS 123

Query: 63  TGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAVV 122
           TGPHFNP    HGAP D  RHAGDLGNI    DGVAE +I D  I L GP+S++GRA V
Sbjct: 124 TGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFV 180

[Close]

BLAST of CmaCh07G011610 vs. NCBI nr
Match: gi|449459610|ref|XP_004147539.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 226.1 bits (575), Expect = 4.0e-56
Identity = 108/121 (89.26%), Postives = 116/121 (95.87%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIY GPDGVAEVSI+DRLISLKGPHS++GRAV
Sbjct: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAV 120

Query: 121 V 122
           V
Sbjct: 121 V 120

[Close]

BLAST of CmaCh07G011610 vs. NCBI nr
Match: gi|659082705|ref|XP_008441989.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 223.4 bits (568), Expect = 2.6e-55
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           M ALKAV LI GGD SN++G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSALKAVVLIAGGD-SNIRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG PGDSERH GDLGNIY GPDGVAEVSI+DRLISLKGPHSI+GRAV
Sbjct: 61  NSTGPHFNPLKKDHGGPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSIIGRAV 120

Query: 121 V 122
           V
Sbjct: 121 V 120

[Close]

BLAST of CmaCh07G011610 vs. NCBI nr
Match: gi|614119714|gb|AHX36945.1| (CuZn superoxide dismutase, partial [Betula platyphylla])

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48
Identity = 94/121 (77.69%), Postives = 108/121 (89.26%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPGLHGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGLHGFHIHAFGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAP D ERHAGDLGNI+ GPDGVAE+SITD+ I L GPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. NCBI nr
Match: gi|1009162302|ref|XP_015899366.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           M  LKAVALI G   S +KGS+QF+Q+ NGATHV+GR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSTLKAVALIIGD--SGLKGSVQFLQEPNGATHVSGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLK NHGAP D ERHAGDLGNI+ G DGVAE+SI+DR I L GPHSILGRAV
Sbjct: 61  NSTGPHFNPLKMNHGAPSDKERHAGDLGNIFAGSDGVAEISISDRQIPLSGPHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]

BLAST of CmaCh07G011610 vs. NCBI nr
Match: gi|854930119|gb|AKN79287.1| (superoxide dismutase 2 [Betula platyphylla])

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 92/121 (76.03%), Postives = 106/121 (87.60%), Query Frame = 1


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPG HGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGFHGFHIHAFGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG P D ERHAGDLGNI+ GPDGVAE+SITD+ I L GPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGGPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRAV 119

Query: 121 V 122
           V
Sbjct: 121 V 119

The following BLAST results are available for this feature:

BLAST of CmaCh07G011610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SODC2_MESCR	6.9e-48	75.21	Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 ...	[more]
SODC_PINSY	1.6e-41	67.77	Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1	[more]
SODC3_ARATH	9.0e-40	66.67	Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana GN=CSD3 PE=1 SV=1	[more]
SODC2_MAIZE	9.9e-39	66.10	Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2	[more]
ALL5B_OLEEU	2.9e-38	63.56	Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2	[more]

BLAST of CmaCh07G011610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZZ1_CUCSA	2.8e-56	89.26	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_4G192040 PE=3 SV=1	[more]
A0A023PRR8_BETPL	1.3e-48	77.69	CuZn superoxide dismutase (Fragment) OS=Betula platyphylla PE=2 SV=1	[more]
A0A0H4CUN7_BETPL	1.1e-47	76.03	Superoxide dismutase [Cu-Zn] OS=Betula platyphylla GN=SOD2 PE=2 SV=1	[more]
A0A059DI16_EUCGR	1.5e-46	79.34	Superoxide dismutase [Cu-Zn] OS=Eucalyptus grandis GN=EUGRSUZ_A02107 PE=3 SV=1	[more]
B9IPR0_POPTR	2.6e-46	79.17	Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=POPTR_0019s05140g PE=3 SV...	[more]

BLAST of CmaCh07G011610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18100.1	5.1e-41	66.67	copper/zinc superoxide dismutase 3	[more]
AT1G08830.1	2.9e-36	63.25	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	1.7e-33	58.82	copper/zinc superoxide dismutase 2	[more]

BLAST of CmaCh07G011610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459610\|ref\|XP_004147539.1\|	4.0e-56	89.26	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|659082705\|ref\|XP_008441989.1\|	2.6e-55	88.43	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|614119714\|gb\|AHX36945.1\|	1.8e-48	77.69	CuZn superoxide dismutase, partial [Betula platyphylla]	[more]
gi\|1009162302\|ref\|XP_015899366.1\|	9.0e-48	79.34	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|854930119\|gb\|AKN79287.1\|	1.5e-47	76.03	superoxide dismutase 2 [Betula platyphylla]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001424	SOD_Cu_Zn_dom
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone

Vocabulary: **Biological Process**
Term	Definition
GO:0006801	superoxide metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0004784	superoxide dismutase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006801	superoxide metabolic process
biological_process	GO:0071486	cellular response to high light intensity
biological_process	GO:0071457	cellular response to ozone
biological_process	GO:0071472	cellular response to salt stress
biological_process	GO:0071493	cellular response to UV-B
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G011610.1	CmaCh07G011610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 47..69 score: 1.5E-24coord: 83..92 score: 1.5E-24coord: 102..124 score: 1.5
IPR001424	Superoxide dismutase, copper/zinc binding domain	GENE3D	G3DSA:2.60.40.200		coord: 13..122 score: 2.7
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 13..121 score: 8.8
IPR001424	Superoxide dismutase, copper/zinc binding domain	unknown	SSF49329	Cu,Zn superoxide dismutase-like	coord: 8..121 score: 1.11
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 47..57 scor
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..121 score: 3.3
None	No IPR available	PANTHER	PTHR10003:SF31	SUPEROXIDE DISMUTASE [CU-ZN] 3	coord: 1..121 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G011610	Cla012125	Watermelon (97103) v1	cmawmB836
CmaCh07G011610	Csa4G192040	Cucumber (Chinese Long) v2	cmacuB860
CmaCh07G011610	MELO3C008809	Melon (DHL92) v3.5.1	cmameB801
CmaCh07G011610	ClCG04G005370	Watermelon (Charleston Gray)	cmawcgB769
CmaCh07G011610	CSPI04G11190	Wild cucumber (PI 183967)	cmacpiB877
CmaCh07G011610	CmoCh07G012080	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G011610	Cp4.1LG19g02010	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G011610	MELO3C008809.2	Melon (DHL92) v3.6.1	cmamedB899
CmaCh07G011610	CsaV3_4G013220	Cucumber (Chinese Long) v3	cmacucB1017
CmaCh07G011610	Cla97C04G071940	Watermelon (97103) v2	cmawmbB898
CmaCh07G011610	Bhi03G001844	Wax gourd	cmawgoB1071
CmaCh07G011610	CsGy4G010750	Cucumber (Gy14) v2	cgybcmaB563
CmaCh07G011610	Carg12602	Silver-seed gourd	carcmaB0398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G011610	Silver-seed gourd	carcmaB0888
CmaCh07G011610	Cucurbita maxima (Rimu)	cmacmaB524
CmaCh07G011610	Cucurbita moschata (Rifu)	cmacmoB859
CmaCh07G011610	Cucurbita pepo (Zucchini)	cmacpeB864
CmaCh07G011610	Cucurbita pepo (Zucchini)	cmacpeB867
CmaCh07G011610	Bottle gourd (USVL1VR-Ls)	cmalsiB791