Carg12602 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12602
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Superoxide dismutase [Cu-Zn]
Location	Cucurbita_argyrosperma_scaffold_021 : 39908 .. 43698 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAACTCCATTTTGAAGGGATTTGCCTTATTTTCCGTTTGGGAATATAAAAACAGAACAAAACAGAACGCACCCATTTACTTTAAGGGCCCACAGATATAGAAACCGCTCATAGTCTCCACTCGTTCATCAATTAACCGCTAAATCTTCAGTCAGGCGATAGACGTGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGTCTGTTTCTCTATGTGGGTTTTTGAATTCGATGCTTGTTTTTGGTTCTTCTGCGCCCATTTTTCATAGGGTTTTTGTAATCGTTGCTTGTTTTTGCTTCTTCTGCGCCCATTTTTCGAAGGGTTTTGTCTGCGATGATTGTTCTTGCTTGTTTTTGCACTTATTTCTGAAAGGACTTTGTGTGCGATGCTTGTTTTTGGTTCTTTTGCGCTCATTTCTTGTAGGGTTTTTGATAAACATGAACAGGGGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGCGATACCACAAATGGCTGCAACTCCACTGGTAATCCCTCTCTTTTTCTGCCCTAATTTCGCCTCGTTCCATTGGTTGAATCGATTTTTTCTTTGTTAGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGCAGGCCCTGATGGTTAGTAGAGTTTCTACTTTTTTTTTCCATTGGAATGTTCTTGAGCTCCTCGTATGACATTTTAGCTGTGGGATGTTTTAGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGGTAAGTTTGCTAATATAGACTGCTTCATATTCAGTGAGTTGTGCTTATGCGAGCCACTGTTGGGCTTCTAATTTGCATTTGTTCTTTGTGATGTGAGTTGTGGATTATATTTTCGTTGTTGTTCTTGTGTTTTGATGTGTAGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCTGTTGTTGTGCACGCTGATCCCGATGATCTTGGCAAGGGTAAGAGTTTGTTCTATTCTACCTGGTCTTTAAGCTTTCAAACGGCATGAGTCTAAGCCCACCGCTAGTAGATATTGTTCTCTTTGGGGTTCCCCTCAAGGTTTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGTATGCTTCGTTCTACTCTCCAACTGATGTGAGATCTCACAATCCAGCCCCCCTTCAGGGACCAGCGTCCTCGCTGGTACTCATTCCTCTCTCCAATCTATGTGAGATCTCACAATCTACCCCTTTCAGGGCCCAGTGTCCTCGCTGGCACACCGCCCGGTGTTTTACTCTGATACAATTTGTAACAGACCAAACCCACCACTAGCAGATATTATCTTCTATGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGATTTCCATACCCATGTGAAGAATGCTTCGTTCCCCTCTCTAACGAATGTGGGATCTCACATAAACGTTCTGTACTGTTGTTGAGATTAGGATAAAATAGCCATTTGAGTTGTGTTACCTTTCATCTCTTGATAAATTATTTAATAACCAGACAGGGACATGTCTTTGATCATTTACCTTAATGATGTTTGTAATATCGAACAAGAGCGACCTATTAAACACATATTTGTAGGTTCCAAGGACCCACTTCTTTAGTTTGTTGATAATTGAATGAGTATCACTCTCTATTGTCAGTTCAAAAGATTATGTTTGATTTGTTGTTCACATTCATTTCGTCTATTCGTTGTTGCCTTTTGGCTTAATCGTACATGTTAAATGCAATAGGCGGGCACGAACTCAGCAAGACGACTGGAAACGCTGGTGCGAGAATCGGATGCGGTTAGTATGCAAATCCTCTACATATTTGGTTTTGGTTTTTAGGTTATAACAATGTCTGCTAGAGATATGCTCCATCTCTAATGAAATGAAAGATGTGAGTTAGGTTTATTTTCTTTAAAAACAACTTGGTTTGGATCAAATTCTTTAAAAGAGGAGATGCTTATAAAAGGAGGAAGATAAGCATTCCACCAAATGTATTAGAGGTATAGAATTTAGCTCACCGCTAGCTAATAATGTCCTCATTGGCCTTTCCCTTTCGGGCTTCCTCTTAGGGTTTTAAAACGTGTCTGTTAGGGAGAGATTTTCACACCCTTATAAGGAATACTTTTTTCCCCTCTCCAACCAATGTGGGATCTTGCAATCCACCCCTTAGGGGCTAGCGTCCTCTTTGGCACGCTGCTTGGTGTCTGGCTCTGATACCATTTGTAACGGCTCAAGCCCCCGCTAGTAGACATTGTCTTCTTTGGGGAGAGGTTTCCTGATACGATAAGGAATCAACTACAAGGGGGTAAGATTCGGATTACCTTGTAGATCGAATATCTCAAGCCAAGAACACTTTGTTTGAGATTCGAATCACTCCAGAAGCAAGATCGATCATGTCTAGCTTCAATGATTCTTGTTGATCAAATATCTCAAACACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAATCTAAACTACATAGAATTGCAAACAAACTCAGCCATTGGCTAAGAAAAAGCACAAATGCTTCTTTTAATATATTTTCCAAGTCTCCTTACAAATACAACATACATGGCTTTATATAGCCTCAAAATGAAACTACTAAAGGCATTCCAAGAGTTGTAACATTCATACTTAATGGCAATAATTAACCATTATGTAATTGTAACCTAAAGTAAATTAAAAGTCTTAAACTACATTAATGAAATACAATAACTCTAAATTACTCTAAATTATAACCCACCCAAAATTTATAACAATCAAACTTCATTCTTCTTCAATGTGGCATGAATTGAAACATCTTTTTGATAATTTTGACAATCTTTTCTTCACATCTCCATTGAAGGATATTGTAGGGTTGATGTCTTTTGGTTCATATCATTTCCACACCCTTACAAGGAATGTTTCGTTTCCCTCTCTAACTAATGTAGGATCTCGCACTAAATTAAGGAGACTAAATTAAGGAGAATAGGCATGTGGCAAGAACATAAGTTTTATTTAGAAGATGTCTGATCACTTGGAAAAAAAACGAAAGAGAATGGTGAGAAGCAGGTGGAAAGAAGGATGAAACGAAACGGGCGGGGTGGGGCGGAGGTGAAGAAACTAACAAAGGTACTGATAGATCGAGAAAAAAACTAGTGAAGAAGTTCTTTGACGAACAAACCCACCTAACCCGAAGAAGCCTCAACTAACCTTAGGCAATAGAGCATGTAGGGCATGCGATATCGATATTGCCTTCCCATCGATGAAACACTCTTTAACAAATGCATAAGGGAAGGGAAGGGAAAGGAAGGACGGAAAATCATGATCAAGATAGCGGAGGCCCCGGACTGTTAAGTAGGGATTTTGGGTGATAGAGAATATGTTATGTTGTTCCTAAATTATTATAGAACTAAGCATTTCGTACCCTTATGGTTTTATTGTACAGTTTTTGAAAGTTTTGCTTGATTGTTGAGCAGGCATTATTGGGATCCAATCCTCTGTTTAAAGGTTGGCTGTGCTGGAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTTTCCTTTTTGTTCTTTTATCAACAATAAGTTATTTC

mRNA sequence

AATAAACTCCATTTTGAAGGGATTTGCCTTATTTTCCGTTTGGGAATATAAAAACAGAACAAAACAGAACGCACCCATTTACTTTAAGGGCCCACAGATATAGAAACCGCTCATAGTCTCCACTCGTTCATCAATTAACCGCTAAATCTTCAGTCAGGCGATAGACGTGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGGGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGCGATACCACAAATGGCTGCAACTCCACTGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGCAGGCCCTGATGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCTGTTGTTGTGCACGCTGATCCCGATGATCTTGGCAAGGGCGGGCACGAACTCAGCAAGACGACTGGAAACGCTGGTGCGAGAATCGGATGCGGCATTATTGGGATCCAATCCTCTGTTTAAAGGTTGGCTGTGCTGGAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTTTCCTTTTTGTTCTTTTATCAACAATAAGTTATTTC

Coding sequence (CDS)

ATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGGGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGCGATACCACAAATGGCTGCAACTCCACTGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGCAGGCCCTGATGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCTGTTGTTGTGCACGCTGATCCCGATGATCTTGGCAAGGGCGGGCACGAACTCAGCAAGACGACTGGAAACGCTGGTGCGAGAATCGGATGCGGCATTATTGGGATCCAATCCTCTGTTTAA

Protein sequence

MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV

Homology

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BLAST of Carg12602 vs. NCBI nr
Match: XP_023521911.1 (superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >XP_023518071.1 superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.6 bits (828), Expect = 3.9e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158

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BLAST of Carg12602 vs. NCBI nr
Match: XP_022966470.1 (superoxide dismutase [Cu-Zn] 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 1.1e-84
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKKNHGAPGDSERHAGDLGNIY GPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158

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BLAST of Carg12602 vs. NCBI nr
Match: XP_022925004.1 (superoxide dismutase [Cu-Zn] 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 320.1 bits (819), Expect = 4.3e-84
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
            STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  ISTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 158

[Close]

BLAST of Carg12602 vs. NCBI nr
Match: XP_022966471.1 (superoxide dismutase [Cu-Zn] 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKKNHGAPGDSERHAGDLGNIY GPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGC 150
           VVHADPDDLGKGGHELSKTTGNAGARIGC
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGC 149

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BLAST of Carg12602 vs. NCBI nr
Match: APO14278.1 (superoxide dismutase 2 [Luffa aegyptiaca])

HSP 1 Score: 305.8 bits (782), Expect = 8.3e-80
Identity = 149/158 (94.30%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LITGGD SN+KGSIQFVQDSNGATHV GR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLITGGD-SNIKGSIQFVQDSNGATHVKGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAPGD ERHAGDLGNIYAGPDGVAE+SITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPGDVERHAGDLGNIYAGPDGVAEISITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLGKGGHELSKTTGNAGAR+GCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARVGCGIIGIQSSV 157

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BLAST of Carg12602 vs. TAIR10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3)

HSP 1 Score: 233.4 bits (594), Expect = 9.5e-62
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 2   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 61
           G L+AVALI G   +NV+G +QFVQD +G THV G++SGLSPG HGFHIH+ GDTTNGC 
Sbjct: 6   GNLRAVALIAG--DNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCI 65

Query: 62  STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 121
           STGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRAVV
Sbjct: 66  STGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVV 125

Query: 122 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSS 158
           VHADPDDLGKGGH+LSK+TGNAG+R+GCGIIG+QSS
Sbjct: 126 VHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQSS 159

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BLAST of Carg12602 vs. TAIR10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1)

HSP 1 Score: 207.2 bits (526), Expect = 7.3e-54
Identity = 101/151 (66.89%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 5   KAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTG 64
           K VA++   +   V G+I F Q+ +G T V+G +SGL PGLHGFH+HALGDTTNGC STG
Sbjct: 3   KGVAVLNSSE--GVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 62

Query: 65  PHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHA 124
           PHFNP  K HGAP D+ RHAGDLGNI  G DG A  +ITD  I L GP+SI+GRAVVVHA
Sbjct: 63  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 122

Query: 125 DPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 156
           DPDDLGKGGHELS  TGNAG R+ CGIIG+Q
Sbjct: 123 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

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BLAST of Carg12602 vs. TAIR10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2)

HSP 1 Score: 173.7 bits (439), Expect = 9.0e-44
Identity = 82/121 (67.77%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 34  VNGRLSGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAG 93
           VN R++GL+PG HGFH+H  GDTTNGC STGPHFNP    HGAP D  RHAGDLGNI A 
Sbjct: 93  VNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINAN 152

Query: 94  PDGVAEVSITDRLISLKGPHSILGRAVVVHADPDDLGKGGHELSKTTGNAGARIGCGIIG 153
            DGVAE +I D  I L GP+S++GRA VVH   DDLGKGGHELS TTGNAG R+ CG+IG
Sbjct: 153 ADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIG 212

Query: 154 I 155
           +
Sbjct: 213 L 213

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BLAST of Carg12602 vs. TAIR10
Match: AT1G12520.1 (copper chaperone for SOD1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 45/139 (32.37%), Postives = 64/139 (46.04%), Query Frame = 0


Query: 6   AVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTGP 65
           AVA   G D   + G ++F Q S     +    +GLSPG H + I+  GD TNG  STG 
Sbjct: 164 AVAEFKGPD---IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGS 223

Query: 66  HFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHAD 125
            +NP +   G         GDLG + A  +G A  S     + +     ++GRAVVV+  
Sbjct: 224 LYNPFQDQTGT-----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKT 283

Query: 126 PDDLGKGGHELSKTTGNAG 145
            D+    G   +    +AG
Sbjct: 284 DDNKSGPGLTAAVIARSAG 291

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BLAST of Carg12602 vs. Swiss-Prot
Match: sp|O49044|SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.2e-67
Identity = 122/158 (77.22%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MG +KAVA+I G  ++NVKGS+QF+QDS G THV GR++GL+PGLHGFHIHALGDTTNGC
Sbjct: 1   MGVIKAVAVING--NNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAP D+ERHAGDLGN+ AG DGVAEVS+ D  I L G HSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHAD DDLG+ GHELSKTTGNAGAR+ CGIIG+Q+SV
Sbjct: 121 VVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQASV 156

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BLAST of Carg12602 vs. Swiss-Prot
Match: sp|Q9FK60|SODC3_ARATH (Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana OX=3702 GN=CSD3 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.7e-60
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 2   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 61
           G L+AVALI G   +NV+G +QFVQD +G THV G++SGLSPG HGFHIH+ GDTTNGC 
Sbjct: 6   GNLRAVALIAG--DNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCI 65

Query: 62  STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 121
           STGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRAVV
Sbjct: 66  STGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVV 125

Query: 122 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSS 158
           VHADPDDLGKGGH+LSK+TGNAG+R+GCGIIG+QSS
Sbjct: 126 VHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQSS 159

[Close]

BLAST of Carg12602 vs. Swiss-Prot
Match: sp|P24669|SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris OX=3349 GN=SODCC PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-59
Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MG LKAV ++ G   ++VKG +QF Q+ +G T V G++SGLSPGLHGFH+HALGDTTNGC
Sbjct: 1   MGLLKAVVVLNGA--ADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
            STGPHFNPL K HGAP D  RHAGDLGN+  G DG  E SITD  I L GPHSI+GRAV
Sbjct: 61  MSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 156
           VVHADPDDLGKGGHELSK+TGNAG R+ CG++G+Q
Sbjct: 121 VVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQ 153

[Close]

BLAST of Carg12602 vs. Swiss-Prot
Match: sp|P11428|SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays OX=4577 GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 226.1 bits (575), Expect = 2.7e-58
Identity = 108/152 (71.05%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 4   LKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNST 63
           +KAVA++ G D   VKG+I F Q+ +G T V G +SGL PGLHGFH+HALGDTTNGC ST
Sbjct: 2   VKAVAVLAGTD---VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMST 61

Query: 64  GPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVH 123
           GPHFNP+ K HGAP D +RHAGDLGN+ AG DGV  V+ITD  I L GPHSI+GRAVVVH
Sbjct: 62  GPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVH 121

Query: 124 ADPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 156
           ADPDDLGKGGHELSK+TGNAG R+ CGIIG+Q
Sbjct: 122 ADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 150

[Close]

BLAST of Carg12602 vs. Swiss-Prot
Match: sp|P23345|SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 8.8e-57
Identity = 104/152 (68.42%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 4   LKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNST 63
           +KAVA++  G    VKG+I F Q+ +G T V G +SGL PGLHGFH+HALGDTTNGC ST
Sbjct: 2   VKAVAVL--GSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMST 61

Query: 64  GPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVH 123
           GPH+NP  K HGAP D  RHAGDLGN+ AG DGVA +++TD  I L GP+SI+GRAVVVH
Sbjct: 62  GPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVH 121

Query: 124 ADPDDLGKGGHELSKTTGNAGARIGCGIIGIQ 156
           ADPDDLGKGGHELSK+TGNAG R+ CGIIG+Q
Sbjct: 122 ADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg12602 vs. TrEMBL
Match: tr|A0A1L5JHV2|A0A1L5JHV2_LUFAE (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.5e-80
Identity = 149/158 (94.30%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LITGGD SN+KGSIQFVQDSNGATHV GR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLITGGD-SNIKGSIQFVQDSNGATHVKGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAPGD ERHAGDLGNIYAGPDGVAE+SITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPGDVERHAGDLGNIYAGPDGVAEISITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLGKGGHELSKTTGNAGAR+GCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARVGCGIIGIQSSV 157

[Close]

BLAST of Carg12602 vs. TrEMBL
Match: tr|A0A0A0KZZ1|A0A0A0KZZ1_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_4G192040 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 8.0e-79
Identity = 146/158 (92.41%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHS++GRAV
Sbjct: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 157

[Close]

BLAST of Carg12602 vs. TrEMBL
Match: tr|A0A1S3B5B1|A0A1S3B5B1_CUCME (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103485986 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 7.4e-77
Identity = 144/158 (91.14%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           M ALKAV LI GGD SN++G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSALKAVVLIAGGD-SNIRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HG PGDSERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHSI+GRAV
Sbjct: 61  NSTGPHFNPLKKDHGGPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSIIGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHAD DDLGKGGHELSKTTGNAGARIGCGIIGIQSSV
Sbjct: 121 VVHADLDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 157

[Close]

BLAST of Carg12602 vs. TrEMBL
Match: tr|A0A023PRR8|A0A023PRR8_BETPL (CuZn superoxide dismutase (Fragment) OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70
Identity = 129/158 (81.65%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPGLHGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGLHGFHIHAFGDTTNGC 60

Query: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK+HGAP D ERHAGDLGNI+AGPDGVAE+SITD+ I L GPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKDHGAPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VVHADPDDLG GGHELSKTTGNAGAR+GCGIIG+QSSV
Sbjct: 121 VVHADPDDLGSGGHELSKTTGNAGARVGCGIIGLQSSV 156

[Close]

BLAST of Carg12602 vs. TrEMBL
Match: tr|A0A1R3JCN0|A0A1R3JCN0_COCAP (Superoxide dismutase [Cu-Zn] OS=Corchorus capsularis OX=210143 GN=CCACVL1_06811 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.7e-69
Identity = 131/157 (83.44%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 2   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 61
           G LKAVALITGGD +NV+GS+QF Q  NG THV G+++GLSPGLHGFHIHALGDTTNGCN
Sbjct: 7   GTLKAVALITGGD-NNVRGSLQFTQIPNGITHVKGKITGLSPGLHGFHIHALGDTTNGCN 66

Query: 62  STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 121
           STGPHFNPLKK+HGAP D ERHAGDLGNI AGPDGVAEVSI D  I L G HSILGRAVV
Sbjct: 67  STGPHFNPLKKDHGAPSDGERHAGDLGNIIAGPDGVAEVSIKDWQIPLSGQHSILGRAVV 126

Query: 122 VHADPDDLGKGGHELSKTTGNAGARIGCGIIGIQSSV 159
           VHADPDDLG+GGHELSKTTGNAGAR+GCGIIG+QSSV
Sbjct: 127 VHADPDDLGRGGHELSKTTGNAGARVGCGIIGLQSSV 162

The following BLAST results are available for this feature:

BLAST of Carg12602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521911.1	3.9e-85	100.00	superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >XP_023518071.1...	[more]
XP_022966470.1	1.1e-84	99.37	superoxide dismutase [Cu-Zn] 2-like isoform X1 [Cucurbita maxima]	[more]
XP_022925004.1	4.3e-84	99.37	superoxide dismutase [Cu-Zn] 2-like isoform X1 [Cucurbita moschata]	[more]
XP_022966471.1	4.9e-80	99.33	superoxide dismutase [Cu-Zn] 2-like isoform X2 [Cucurbita maxima]	[more]
APO14278.1	8.3e-80	94.30	superoxide dismutase 2 [Luffa aegyptiaca]	[more]

BLAST of Carg12602 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18100.1	9.5e-62	71.79	copper/zinc superoxide dismutase 3	[more]
AT1G08830.1	7.3e-54	66.89	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	9.0e-44	67.77	copper/zinc superoxide dismutase 2	[more]
AT1G12520.1	1.9e-09	32.37	copper chaperone for SOD1	[more]

BLAST of Carg12602 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49044\|SODC2_MESCR	7.2e-67	77.22	Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
sp\|Q9FK60\|SODC3_ARATH	1.7e-60	71.79	Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana OX=3702 GN=CSD3 PE=1 SV=1	[more]
sp\|P24669\|SODC_PINSY	1.1e-59	69.68	Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris OX=3349 GN=SODCC PE=2 SV=1	[more]
sp\|P11428\|SODC2_MAIZE	2.7e-58	71.05	Superoxide dismutase [Cu-Zn] 2 OS=Zea mays OX=4577 GN=SODCC.1 PE=2 SV=2	[more]
sp\|P23345\|SODC4_MAIZE	8.8e-57	68.42	Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2	[more]

BLAST of Carg12602 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1L5JHV2\|A0A1L5JHV2_LUFAE	5.5e-80	94.30	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
tr\|A0A0A0KZZ1\|A0A0A0KZZ1_CUCSA	8.0e-79	92.41	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_4G192040 PE=3 SV=...	[more]
tr\|A0A1S3B5B1\|A0A1S3B5B1_CUCME	7.4e-77	91.14	Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103485986 PE=3 SV=1	[more]
tr\|A0A023PRR8\|A0A023PRR8_BETPL	3.0e-70	81.65	CuZn superoxide dismutase (Fragment) OS=Betula platyphylla OX=78630 PE=2 SV=1	[more]
tr\|A0A1R3JCN0\|A0A1R3JCN0_COCAP	5.7e-69	83.44	Superoxide dismutase [Cu-Zn] OS=Corchorus capsularis OX=210143 GN=CCACVL1_06811 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR018152	SOD_Cu/Zn_BS
IPR024134	SOD_Cu/Zn_/chaperone
IPR036423	SOD-like_Cu/Zn_dom_sf
IPR001424	SOD_Cu_Zn_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006801	superoxide metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12602-RA	Carg12602-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 102..124 score: 60.78 coord: 47..69 score: 76.65 coord: 83..92 score: 74.54 coord: 127..153 score: 71.55
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 13..152 e-value: 2.0E-49 score: 167.3
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 5..149 e-value: 1.46422E-57 score: 177.838
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	G3DSA:2.60.40.200		coord: 3..156 e-value: 1.2E-62 score: 212.6
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	SSF49329	Cu,Zn superoxide dismutase-like	coord: 9..154
None	No IPR available	PANTHER	PTHR10003:SF31	SUPEROXIDE DISMUTASE CU-ZN 3	coord: 3..158
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 3..158
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 141..152
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 47..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12602	Cla012125	Watermelon (97103) v1	carwmB0276
Carg12602	Csa4G192040	Cucumber (Chinese Long) v2	carcuB0310
Carg12602	MELO3C008809	Melon (DHL92) v3.5.1	carmeB0283
Carg12602	ClCG04G005370	Watermelon (Charleston Gray)	carwcgB0277
Carg12602	CSPI04G11190	Wild cucumber (PI 183967)	carcpiB0314
Carg12602	CmaCh07G011610	Cucurbita maxima (Rimu)	carcmaB0398
Carg12602	CmoCh07G012080	Cucurbita moschata (Rifu)	carcmoB0395
Carg12602	Cp4.1LG19g02010	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12602	CsGy4G010750	Cucumber (Gy14) v2	carcgybB0296
Carg12602	MELO3C008809.2	Melon (DHL92) v3.6.1	carmedB0295
Carg12602	CsaV3_4G013220	Cucumber (Chinese Long) v3	carcucB0313
Carg12602	Cla97C04G071940	Watermelon (97103) v2	carwmbB0293
Carg12602	Bhi03G001844	Wax gourd	carwgoB0372

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12602	Bottle gourd (USVL1VR-Ls)	carlsiB258