CsaV3_4G007120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G007120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Chitin synthase, putative (DUF1218)
Location	chr4 : 4824506 .. 4826296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAACCCTATTGAAATAGCCTACCCTTGTTGAATATAATTGACCAAATTGCCGACTCTAAGTTACCTTACTCCCCTCCCCTACAACATTTGGGGCCAAGAATATTAATCCTAGGTAGGTGGCCTCTATGGGTTAAACTTTGAACCCATTTCTTAATCCTTATAAGTCTTCTATTATACCCACGGACCTTATTGACCAGAAGGTCAACCTGATGATTACGTCTAAACTTTTTTTTATACAACTCTGTCCAAGTTCTGTTCAAGTTGTTCTCAATTAAAACCAAACAGGTAGCTCTCTTTCCAAGCAACTGAAAAAAGCCTCTTGAAAGAAAAATTTGAACTACCAACACAAAAGCAACAAGCAATCCCATCCGAAAAGGCACCTAAGCTCCCAATTCCTCTTCAGTCACGTTGAAGCTAACCATTCCTGCGTTTTAAATTCTTCCTCCTAATAACAACCCAACCTGCCATGGGAAAACACCGTTTTGGCTATGCCTTAAGCCTCTCCATCGTTGTCTCACTAGCACTCATTGCCTTTGTCTCGTGTGTAGCTGCAGAATTGCACAGAACAAAGGTACAGACTCAAAAGTTTCATTGTTAAATAAGATTTTGGTTTTTGACTAACAATCCACTGTTTTTGGTAGACGAAAGACCTCAAGTTGGATGGGAAGTTGTGCTATTTGCCTGAAAGTCAAGCATTTGGATATGGGGTTGCAGCTTTGGCCTGTTTGGTTATGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTATCAATTCAAGAGAGAAGAAGAGAAGTGAACAACCTCCTAAAAGACCAAATTTAGCCACATTTTTTCTTGTTGTTTCATGGTAGGTGTGATTTTATTTCTCTCGTTTTAACTCATTCATCAACCATTAAGAATTCTTCCAAATCACCAGTCATAGGCATGAGCTCATCATCTGATCTCATTCATCTTCAAATGAAATTTAATTTGATAACATTTCGTTCTTGATTGAGAACCTTCGAAGAGATTCATAAGATTTCCAGAGAAAATAAGAATCAATATATAATTGAACTGTGAATGAGAGTGGATTTGATGTTCTAGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCACGGCGTCGAGTATGAGCAGACAGCAGCCGTACGCGACGGGATGGTTGGGCGGAGAGTGCTACTTGGTGAAAAGCGGTGTATACGTCGCCGCAGCAATTCTAATCCTCATCTCGATATGCTCAACTGTAGGCTCCGCCGTAACAGTTCGAATCAACGAATCCAGAAAATCTACCACACTTCCAAAATGAAAAGGAATAAAAAGCTGAAAGAGTAGAGAAAAATAAAGGCGTCGCAACGGCAATGGCAGGGGCAACGGCGGCGATCGGTAGCCTGCAGCAGAAAGGTCCGGGTTGGTATGTTCCTGCGATGGTGCCTCGCTGGAAGGGCTCTTGCCCGAGTTCACATTTTTTATTCGGTGAAAATAACACTTCAAAATTACTTTGGTGTCCCCAAAATTTAAGAAAATTAACCCTTTTAGGTAGAAAATAAATTTGAAAACTAGTTTTTCAATTAAGGTTGCTTTTCATGGTACGTTTTTTATTCTAATTTAATTTTTTTTAAGTATAAATCGAGGTTTTGATATTTGAACCTTAACTTTTCCATCCTTTAATACATATGTATAGATGAGTTAATGAATATTTTTATAGGAAGAAATTTTAATTTTCTTTTCTCCTTTTGATAATTATATAATTTCATATTAAAATAATCTTATTCTATCTAAG

mRNA sequence

ATGGGAAAACACCGTTTTGGCTATGCCTTAAGCCTCTCCATCGTTGTCTCACTAGCACTCATTGCCTTTGTCTCGTGTGTAGCTGCAGAATTGCACAGAACAAAGACGAAAGACCTCAAGTTGGATGGGAAGTTGTGCTATTTGCCTGAAAGTCAAGCATTTGGATATGGGGTTGCAGCTTTGGCCTGTTTGGTTATGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTATCAATTCAAGAGAGAAGAAGAGAAGTGAACAACCTCCTAAAAGACCAAATTTAGCCACATTTTTTCTTGTTGTTTCATGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCACGGCGTCGAGTATGAGCAGACAGCAGCCGTACGCGACGGGATGGTTGGGCGGAGAGTGCTACTTGGTGAAAAGCGGTGTATACGTCGCCGCAGCAATTCTAATCCTCATCTCGATATGCTCAACTGTAGGCTCCGCCGTAACAGTTCGAATCAACGAATCCAGAAAATCTACCACACTTCCAAAATGA

Coding sequence (CDS)

ATGGGAAAACACCGTTTTGGCTATGCCTTAAGCCTCTCCATCGTTGTCTCACTAGCACTCATTGCCTTTGTCTCGTGTGTAGCTGCAGAATTGCACAGAACAAAGACGAAAGACCTCAAGTTGGATGGGAAGTTGTGCTATTTGCCTGAAAGTCAAGCATTTGGATATGGGGTTGCAGCTTTGGCCTGTTTGGTTATGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTATCAATTCAAGAGAGAAGAAGAGAAGTGAACAACCTCCTAAAAGACCAAATTTAGCCACATTTTTTCTTGTTGTTTCATGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCACGGCGTCGAGTATGAGCAGACAGCAGCCGTACGCGACGGGATGGTTGGGCGGAGAGTGCTACTTGGTGAAAAGCGGTGTATACGTCGCCGCAGCAATTCTAATCCTCATCTCGATATGCTCAACTGTAGGCTCCGCCGTAACAGTTCGAATCAACGAATCCAGAAAATCTACCACACTTCCAAAATGA

Protein sequence

MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAALACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK

Homology

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BLAST of CsaV3_4G007120 vs. NCBI nr
Match: XP_011653242.1 (PREDICTED: uncharacterized protein LOC105435192 [Cucumis sativus] >KGN53467.1 hypothetical protein Csa_4G056580 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 8.3e-92
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA
Sbjct: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120
           LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120

Query: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180
           SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK
Sbjct: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180

[Close]

BLAST of CsaV3_4G007120 vs. NCBI nr
Match: XP_008451867.1 (PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 152/180 (84.44%), Postives = 154/180 (85.56%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           MGKH FGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA
Sbjct: 1   MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120
           LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLA                     
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLAXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180
               RQQPYATGWLGGECYLVKSGVYVAAAILILISIC+TVGSAVTVR+NESRKSTTLPK
Sbjct: 121 XXXXRQQPYATGWLGGECYLVKSGVYVAAAILILISICTTVGSAVTVRMNESRKSTTLPK 180

[Close]

BLAST of CsaV3_4G007120 vs. NCBI nr
Match: XP_022136395.1 (uncharacterized protein LOC111008116 [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           M K R GY L+LSIVVSLAL+AFVSC+AAELHRTK KDLKLDGK CYLPE++AFGYGVAA
Sbjct: 1   MEKRRLGYTLTLSIVVSLALVAFVSCIAAELHRTKIKDLKLDGKQCYLPENRAFGYGVAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120
           L CLVMAQVIGNILLC S   NSREKK S Q  KRPNLA   LVVSWASF          
Sbjct: 61  LVCLVMAQVIGNILLCRSFKFNSREKKCSNQSSKRPNLAIILLVVSWASFXXXXXXXXXX 120

Query: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTV-----RINESRKS 180
              SR+QPYA GWLGGECYLVK+GV+VA+AILIL+++ STVGSAVT+     +I+ES K+
Sbjct: 121 XXXSRRQPYAAGWLGGECYLVKAGVFVASAILILVTVGSTVGSAVTILRKSLQIDESGKT 180

[Close]

BLAST of CsaV3_4G007120 vs. NCBI nr
Match: XP_023880868.1 (uncharacterized protein LOC111993248 [Quercus suber])

HSP 1 Score: 194.9 bits (494), Expect = 2.4e-46
Identity = 101/178 (56.74%), Postives = 132/178 (74.16%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           M KH++G+ALS SIVVSL L +F+SC+AAEL RT+ KD+KLDGKLCYLP S AFG+G+AA
Sbjct: 1   MEKHQYGFALSFSIVVSLGLASFLSCIAAELKRTQIKDIKLDGKLCYLPGSHAFGFGIAA 60

Query: 61  LACLVMAQVIGNILLC-TSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLST 120
           L CL+ AQ+IGN+++C  SCS     ++R++   +RP  A+  L +SW SF    +L+S 
Sbjct: 61  LVCLLTAQIIGNLIICMNSCS----REERNDCKTRRPRTASILLSISWLSFGFAAILMSV 120

Query: 121 ASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTT 178
           A SMSR QPY  GWL GECYLVK G Y+ +AIL+LI+I ST+GSA+T +    RKS T
Sbjct: 121 AISMSRSQPYGKGWLDGECYLVKDGTYIGSAILVLITIGSTLGSAITTK----RKSQT 170

[Close]

BLAST of CsaV3_4G007120 vs. NCBI nr
Match: XP_022941598.1 (uncharacterized protein LOC111446907 [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 6.9e-46
Identity = 112/186 (60.22%), Postives = 124/186 (66.67%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           M K RF YALSLSIVVS AL+A VSC+AAELHRTKTKDL+LDGKLCYLPESQAF YGVAA
Sbjct: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKK-RSEQPPKRPNLATFFLVVSWASFTVVILLLST 120
           LACLV+AQVIGN+L CTSCS+NSR KK                                 
Sbjct: 61  LACLVIAQVIGNVLFCTSCSLNSRGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 ASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTV-----RINESRK 180
                    Y  GWL GECYLVKSGVY+AAAILIL+S CS V SAV V     +I+ESRK
Sbjct: 121 XXXXXXXXXYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDESRK 180

[Close]

BLAST of CsaV3_4G007120 vs. TAIR10
Match: AT4G19370.1 (Protein of unknown function (DUF1218))

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-28
Identity = 67/160 (41.88%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 13  SIVVSLALIAFVSCVAAELHRTKTKDLKLD-GKLCYLPESQAFGYGVAALACLVMAQVIG 72
           S+V SL L++F++C AAE  RT+ +D++ D  + CY+P S AFG G AA+ C  +AQ++G
Sbjct: 8   SVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIVG 67

Query: 73  NILLCTSCSINSREKKRSEQPPKRPNLA--TFFLVVSWASFTVVILLLSTASSMSRQQPY 132
           NI++      N R + + E   K  +L   T  L++SW++F VV+L+LSTA SMSR Q Y
Sbjct: 68  NIVVFR----NHRTRTKREDGYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAY 127

Query: 133 ATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRI 170
             GWL  +CYLVK GV+ A+  L ++ + +   SA  +++
Sbjct: 128 GEGWLDEDCYLVKDGVFAASGCLAILGLGALTISATRIKV 163

[Close]

BLAST of CsaV3_4G007120 vs. TAIR10
Match: AT1G31720.1 (Protein of unknown function (DUF1218))

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 10  LSLSIVVSLALIAFVSCVAAELHRTKT----------KDLKLDGKLCYLPESQAFGYGVA 69
           L    +    L AF  C++AE  + K           KDLK DG+ CYLPE++AFG G+A
Sbjct: 17  LFFMFIFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIA 76

Query: 70  ALACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLST 129
           AL C+ +AQ++GN+++C        +K R+             L+ SW +F V + L+S 
Sbjct: 77  ALVCVSVAQIVGNVVICR--GFTKTDKTRT------TIFCIILLLFSWVNFAVAVTLISV 136

Query: 130 ASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGS 164
            +SM+R+Q Y  GWL  ECYLVK GV+ A+  L + ++ + +G+
Sbjct: 137 GASMNREQIYGKGWLNRECYLVKDGVFAASGFLSVTTMAAILGA 172

[Close]

BLAST of CsaV3_4G007120 vs. TrEMBL
Match: tr|A0A0A0KYL9|A0A0A0KYL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056580 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 5.5e-92
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA
Sbjct: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120
           LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120

Query: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180
           SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK
Sbjct: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180

[Close]

BLAST of CsaV3_4G007120 vs. TrEMBL
Match: tr|A0A1S3BTM2|A0A1S3BTM2_CUCME (uncharacterized protein LOC103493027 OS=Cucumis melo OX=3656 GN=LOC103493027 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.8e-74
Identity = 152/180 (84.44%), Postives = 154/180 (85.56%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           MGKH FGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA
Sbjct: 1   MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120
           LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLA                     
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLAXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180
               RQQPYATGWLGGECYLVKSGVYVAAAILILISIC+TVGSAVTVR+NESRKSTTLPK
Sbjct: 121 XXXXRQQPYATGWLGGECYLVKSGVYVAAAILILISICTTVGSAVTVRMNESRKSTTLPK 180

[Close]

BLAST of CsaV3_4G007120 vs. TrEMBL
Match: tr|A0A2P4MZJ8|A0A2P4MZJ8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15634 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 95/177 (53.67%), Postives = 124/177 (70.06%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           M KH++G+ALS SIVVSL L +F+SC+AAEL RT+ KD+KLDGKLCYLP S AFG+G+AA
Sbjct: 1   MEKHQYGFALSFSIVVSLGLASFLSCIAAELKRTQIKDIKLDGKLCYLPGSHAFGFGIAA 60

Query: 61  LACLVMAQVIGNILLC-TSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLST 120
           L CL+ AQ+IGN+++C  SCS     ++R++   +RP  A+  L +SW SF    +L+S 
Sbjct: 61  LVCLLTAQIIGNLIICMNSCS----REERNDCKTRRPRTASILLSISWLSFGFAAILMSV 120

Query: 121 ASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKST 177
           A SMSR QPY  GWL GECYLVK G Y+ +AIL+LI+I          + N  R ST
Sbjct: 121 AISMSRSQPYGKGWLDGECYLVKDGTYIGSAILVLITIGKGTNMTFQSKNNLVRLST 173

[Close]

BLAST of CsaV3_4G007120 vs. TrEMBL
Match: tr|A0A2I4FRH1|A0A2I4FRH1_9ROSI (uncharacterized protein LOC109001429 isoform X1 OS=Juglans regia OX=51240 GN=LOC109001429 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.2e-42
Identity = 87/167 (52.10%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           M KH++G+    SI++SL L++F+SC+AAEL RTK  DLKL+GKLC LP S AFG+G+AA
Sbjct: 1   MEKHQYGFVFIFSIILSLGLVSFLSCIAAELKRTKLVDLKLNGKLCSLPGSHAFGFGIAA 60

Query: 61  LACLVMAQVIGNILLC-TSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLST 120
           L CL++AQ++GN+++C  +CS     +KR     + P +A   L +SW SF + ++L+S 
Sbjct: 61  LLCLLVAQIMGNLIICRNACS----REKRGSCKARAPGIAKILLFISWMSFGIAVILISG 120

Query: 121 ASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVT 167
           A SMSR+QPY  GWL GECY+VK G Y+ +AIL+L++I ST+GSA T
Sbjct: 121 AMSMSRRQPYGKGWLDGECYIVKEGTYIGSAILVLVTIGSTLGSAFT 163

[Close]

BLAST of CsaV3_4G007120 vs. TrEMBL
Match: tr|A0A2R6Q3J7|A0A2R6Q3J7_ACTCH (Glutamate receptor 3.1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22639 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40
Identity = 87/172 (50.58%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60
           M K+ F + L LS+V +L +++F  C+A+E  RTK KDLKLDG+LCYLP S+AFG G+AA
Sbjct: 1   MEKNHFWFTLILSVVTALGIVSFALCIASEFKRTKRKDLKLDGRLCYLPGSRAFGLGIAA 60

Query: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120
           L CL  AQ+IGN ++C S  +  R   R+    K+  +A+ FLV+SW SF V ++L+S A
Sbjct: 61  LICLSAAQIIGNFVICKSLCLRER---RTSCKAKKTTIASTFLVLSWVSFGVAVILISVA 120

Query: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSA-VTVRINE 172
           +SM+R+QPY  GWL GECY+VK GVY  A +L+L++  ST+ SA +T R+ E
Sbjct: 121 TSMNRKQPYGEGWLDGECYIVKDGVYGGAGMLVLVTAGSTLASAIITTRMRE 169

The following BLAST results are available for this feature:

BLAST of CsaV3_4G007120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653242.1	8.3e-92	100.00	PREDICTED: uncharacterized protein LOC105435192 [Cucumis sativus] >KGN53467.1 hy...	[more]
XP_008451867.1	1.0e-73	84.44	PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo]	[more]
XP_022136395.1	3.2e-59	68.65	uncharacterized protein LOC111008116 [Momordica charantia]	[more]
XP_023880868.1	2.4e-46	56.74	uncharacterized protein LOC111993248 [Quercus suber]	[more]
XP_022941598.1	6.9e-46	60.22	uncharacterized protein LOC111446907 [Cucurbita moschata]	[more]

BLAST of CsaV3_4G007120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19370.1	3.5e-28	41.88	Protein of unknown function (DUF1218)	[more]
AT1G31720.1	1.1e-24	36.59	Protein of unknown function (DUF1218)	[more]

BLAST of CsaV3_4G007120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G007120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYL9\|A0A0A0KYL9_CUCSA	5.5e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056580 PE=4 SV=1	[more]
tr\|A0A1S3BTM2\|A0A1S3BTM2_CUCME	6.8e-74	84.44	uncharacterized protein LOC103493027 OS=Cucumis melo OX=3656 GN=LOC103493027 PE=...	[more]
tr\|A0A2P4MZJ8\|A0A2P4MZJ8_QUESU	4.7e-43	53.67	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15634 PE=4 SV=1	[more]
tr\|A0A2I4FRH1\|A0A2I4FRH1_9ROSI	5.2e-42	52.10	uncharacterized protein LOC109001429 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2R6Q3J7\|A0A2R6Q3J7_ACTCH	4.9e-40	50.58	Glutamate receptor 3.1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G007120.1	CsaV3_4G007120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 60..157 e-value: 3.0E-16 score: 59.6
None	No IPR available	PANTHER	PTHR31769:SF6	SUBFAMILY NOT NAMED	coord: 8..172
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 8..172
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G007120	CSPI04G06910	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G007120	CmaCh04G005990	Cucurbita maxima (Rimu)	cmacucB0841
CsaV3_4G007120	CmoCh01G014090	Cucurbita moschata (Rifu)	cmocucB0560
CsaV3_4G007120	CmoCh04G006410	Cucurbita moschata (Rifu)	cmocucB0827
CsaV3_4G007120	Cp4.1LG01g01270	Cucurbita pepo (Zucchini)	cpecucB0496
CsaV3_4G007120	CsGy4G006840	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G007120	Carg13147	Silver-seed gourd	carcucB0052
CsaV3_4G007120	Cla005459	Watermelon (97103) v1	cucwmB323
CsaV3_4G007120	MELO3C016217	Melon (DHL92) v3.5.1	cucmeB300
CsaV3_4G007120	ClCG07G011130	Watermelon (Charleston Gray)	cucwcgB343
CsaV3_4G007120	MELO3C016217.2	Melon (DHL92) v3.6.1	cucmedB292
CsaV3_4G007120	Cla97C07G137860	Watermelon (97103) v2	cucwmbB329
CsaV3_4G007120	Bhi01G002355	Wax gourd	cucwgoB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G007120	Silver-seed gourd	carcucB0689
CsaV3_4G007120	Cucumber (Gy14) v1	cgycucB345
CsaV3_4G007120	Cucurbita maxima (Rimu)	cmacucB0393
CsaV3_4G007120	Cucurbita moschata (Rifu)	cmocucB0388
CsaV3_4G007120	Cucurbita pepo (Zucchini)	cpecucB0266
CsaV3_4G007120	Bottle gourd (USVL1VR-Ls)	cuclsiB323