CmoCh04G006410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chitin synthase 1
Location	Cmo_Chr04 : 3171579 .. 3172667 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATAGAAAAGCCCCTTAAGAGCTCCCAATTTCCTCTTTAGTCACATCGAAGCTACGCCTTTTCCTGTGTTTTATATTCATTCTCCTCATAACACCACACCCCGCCATGGAAAAACGCCGTTTCGTCTACGCCTTAAGCCTCTCGATTGTCGTCTCCTTCGCACTCGTCGCCATTGTGTCGTGTATAGCTGCAGAATTACACAGAACAAAGGTATAGAATTCATCGCACAAGTGTGTGTTTGTTCATTAAGAACTTGGTTTTTAGCTAACTTTTCCCTCTTTTTTTTGTAGACCAAAGATCTCAGATTGGATGGGAAACTGTGCTATTTGCCAGAAAGTCAAGCATTTAGATATGGAGTTGCAGCATTGGCGTGTTTGGTTATTGCTCAAGTTATTGGAAATGTTTTGTTCTGCACAAGTTGCAGTTTGAACTCAAGAGGGAAGAAAAGCAATGATCAACAACGTCCTAGAAGATCAATTTTGGCCATAATTCTTCTTGTTATTTCTTGGTAGGTTTGGTTCATTTCTCTTGTTTTAACTGTTTGATCAGCCTTCCAAAAGTCATTCAAATCACCAATCAATAGTCATAAATCTTCAATTTCAAGAACTTATCATCTAGTCTCATTCATGTTTATGTTCAATCTCTTGAGAATTTGCTAATAATTCATTCTTCTGATTCAGAATCTTCAAAGAAATTTGTAAGAATTTGCTAATAGTTGATTATTCATGAAACGGAAAAATCAATTCAAATCGAAAATGTAATTCAAGAGGAGATTTGATGTTCTAGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGCGGCGACGAGTATGAGTAGACAGCAACAATACGGTGCGGGCTGGTTGAGCGGCGAGTGCTATTTGGTGAAGAGCGGCGTATACATCGCCGCAGCAATTCTGATCCTCGTTTCGACATGTTCAATCGTCTGCTCCGCCGTAGCAGTCTTGAGGAAGAGCCTTCAGATCGACGAATCCAGAAAAACTAGTACACTGCCAAAATAAAAAACAGGAAATAAAAGCGTCGCAACGGGAACGGCAACGGCGGCGATCGGAAGAAGGCGGCG

mRNA sequence

CAAAATAGAAAAGCCCCTTAAGAGCTCCCAATTTCCTCTTTAGTCACATCGAAGCTACGCCTTTTCCTGTGTTTTATATTCATTCTCCTCATAACACCACACCCCGCCATGGAAAAACGCCGTTTCGTCTACGCCTTAAGCCTCTCGATTGTCGTCTCCTTCGCACTCGTCGCCATTGTGTCGTGTATAGCTGCAGAATTACACAGAACAAAGACCAAAGATCTCAGATTGGATGGGAAACTGTGCTATTTGCCAGAAAGTCAAGCATTTAGATATGGAGTTGCAGCATTGGCGTGTTTGGTTATTGCTCAAGTTATTGGAAATGTTTTGTTCTGCACAAGTTGCAGTTTGAACTCAAGAGGGAAGAAAAGCAATGATCAACAACGTCCTAGAAGATCAATTTTGGCCATAATTCTTCTTAATCTTCAAAGAAATTTGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGCGGCGACGAGTATGAGTAGACAGCAACAATACGGTGCGGGCTGGTTGAGCGGCGAGTGCTATTTGGTGAAGAGCGGCGTATACATCGCCGCAGCAATTCTGATCCTCGTTTCGACATGTTCAATCGTCTGCTCCGCCGTAGCAGTCTTGAGGAAGAGCCTTCAGATCGACGAATCCAGAAAAACTAGTACACTGCCAAAATAAAAAACAGGAAATAAAAGCGTCGCAACGGGAACGGCAACGGCGGCGATCGGAAGAAGGCGGCG

Coding sequence (CDS)

ATGGAAAAACGCCGTTTCGTCTACGCCTTAAGCCTCTCGATTGTCGTCTCCTTCGCACTCGTCGCCATTGTGTCGTGTATAGCTGCAGAATTACACAGAACAAAGACCAAAGATCTCAGATTGGATGGGAAACTGTGCTATTTGCCAGAAAGTCAAGCATTTAGATATGGAGTTGCAGCATTGGCGTGTTTGGTTATTGCTCAAGTTATTGGAAATGTTTTGTTCTGCACAAGTTGCAGTTTGAACTCAAGAGGGAAGAAAAGCAATGATCAACAACGTCCTAGAAGATCAATTTTGGCCATAATTCTTCTTAATCTTCAAAGAAATTTGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGCGGCGACGAGTATGAGTAGACAGCAACAATACGGTGCGGGCTGGTTGAGCGGCGAGTGCTATTTGGTGAAGAGCGGCGTATACATCGCCGCAGCAATTCTGATCCTCGTTTCGACATGTTCAATCGTCTGCTCCGCCGTAGCAGTCTTGAGGAAGAGCCTTCAGATCGACGAATCCAGAAAAACTAGTACACTGCCAAAATAA

Homology

[Close]

BLAST of CmoCh04G006410 vs. TrEMBL
Match: A0A0A0KYL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056580 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 136/188 (72.34%), Postives = 154/188 (81.91%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           M K RF YALSLSIVVS AL+A VSC+AAELHRTKTKDL+LDGKLCYLPESQAF YGVAA
Sbjct: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILLL 120
           LACLV+AQVIGN+L CTSCS+NSR KK ++Q  P+R  LA   L +  + ASFTVVILLL
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQP-PKRPNLATFFLVV--SWASFTVVILLL 120

Query: 121 SAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDES 180
           S A+SMSRQQ Y  GWL GECYLVKSGVY+AAAILIL+S CS V SAV V     +I+ES
Sbjct: 121 STASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTV-----RINES 180

Query: 181 RKTSTLPK 189
           RK++TLPK
Sbjct: 181 RKSTTLPK 180

[Close]

BLAST of CmoCh04G006410 vs. TrEMBL
Match: V4T3Z0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012886mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-32
Identity = 85/184 (46.20%), Postives = 122/184 (66.30%), Query Frame = 1


Query: 1   MEKR--RFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGV 60
           MEK+  R+ +   L I++S  LV+ +SC+ AE  + K KDL+LDGKLCYLPES A   G+
Sbjct: 1   MEKKHHRYGFVFVLCIIISLDLVSFISCLIAEAKKAKRKDLKLDGKLCYLPESHAHELGI 60

Query: 61  AALACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVIL 120
           AAL CL +AQVIGN+L C      +R K++N + +  R   A+++L    +  SF V ++
Sbjct: 61  AALICLGVAQVIGNLLICR--IFCTRDKRNNCKTQKLRIATALLVL----SWISFGVAVI 120

Query: 121 LLSAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQID 180
           LL AATSMSR+Q YG GWL  ECYLVK GV+  +  L+LVS+ SIV +A+   ++  Q++
Sbjct: 121 LLGAATSMSRKQPYGKGWLDRECYLVKDGVFGGSGGLVLVSSGSIVAAAIVSSQRKTQVE 178

Query: 181 ESRK 183
           + R+
Sbjct: 181 QRRR 178

[Close]

BLAST of CmoCh04G006410 vs. TrEMBL
Match: A0A067FY76_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030101mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-32
Identity = 85/184 (46.20%), Postives = 122/184 (66.30%), Query Frame = 1


Query: 1   MEKR--RFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGV 60
           MEK+  R+ +   L I++S  LV+ +SC+ AE  + K KDL+LDGKLCYLPES A   G+
Sbjct: 1   MEKKHHRYGFVFVLCIIISLDLVSFISCLIAEAKKAKRKDLKLDGKLCYLPESHAHELGI 60

Query: 61  AALACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVIL 120
           AAL CL +AQVIGN+L C      +R K++N + +  R   A+++L    +  SF V ++
Sbjct: 61  AALICLGVAQVIGNLLICR--IFCTRDKRNNCKTQKLRIATALLVL----SWISFGVAVI 120

Query: 121 LLSAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQID 180
           LL AATSMSR+Q YG GWL  ECYLVK GV+  +  L+LVS+ SIV +A+   ++  Q++
Sbjct: 121 LLGAATSMSRKQPYGKGWLDRECYLVKDGVFGGSGGLVLVSSGSIVAAAIVSSQRKTQVE 178

Query: 181 ESRK 183
           + R+
Sbjct: 181 QRRR 178

[Close]

BLAST of CmoCh04G006410 vs. TrEMBL
Match: A0A067L150_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06716 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.0e-32
Identity = 83/181 (45.86%), Postives = 118/181 (65.19%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           MEK  + + L  SI++S AL++ VSCI AE  + K +++RLD KLCYLPES+AF +G+AA
Sbjct: 1   MEKHLYGFLLIFSIIISLALLSFVSCILAEFKKAKKEEVRLDNKLCYLPESRAFGFGIAA 60

Query: 61  LACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILLL 120
           LA LVIAQVIGN++ C +  L   G  S   +RP    +A ++L+      SF V +++L
Sbjct: 61  LAFLVIAQVIGNMIICRNFWLRKEGITSK-TKRPNLITIAFLVLSWM----SFGVAVIIL 120

Query: 121 SAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDES 180
           SAATSMSR+Q+YG GWL  +CY+VK GVY  + IL+L+   + + ++   L K      S
Sbjct: 121 SAATSMSRKQEYGKGWLDQDCYIVKDGVYFGSGILVLLCIAATLATSFLTLNKPQPQQPS 176

Query: 181 R 182
           R
Sbjct: 181 R 176

[Close]

BLAST of CmoCh04G006410 vs. TrEMBL
Match: M5W9J1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023572mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 84/191 (43.98%), Postives = 123/191 (64.40%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           MEK ++   L L +V    LV+I+SCIAAE+ +TK ++LR+ G+LC+LPESQAF +GVAA
Sbjct: 1   MEKHQYELVLILFVVACLGLVSIISCIAAEIKKTKEEELRVIGRLCHLPESQAFGFGVAA 60

Query: 61  LACLVIAQVIGNVLFCT-SCSLNSRGKKSNDQQRPRRSILAIILLNLQ-RNLASFTVVIL 120
           L CL  AQ++GN++ CT  CS   + K  +D     ++    I + L   +  SF + + 
Sbjct: 61  LICLFAAQMVGNLIVCTYFCSRERKKKSGSDFSISSKAKTPTIWMALACISWTSFVMAVT 120

Query: 121 LLSAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAV-LRKSLQI 180
           LLSAATSMSR Q YG GWL G+CYLVK G+YI + IL+L++  S +   + +   +  Q+
Sbjct: 121 LLSAATSMSRDQPYGQGWLDGQCYLVKQGIYIGSGILVLIAIGSTLGLIIIITTMRQTQV 180

Query: 181 DESRKTSTLPK 189
           DE  +++ L K
Sbjct: 181 DEGHQSTKLKK 191

[Close]

BLAST of CmoCh04G006410 vs. TAIR10
Match: AT1G31720.1 (AT1G31720.1 Protein of unknown function (DUF1218))

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-24
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 1


Query: 10  LSLSIVVSFALVAIVSCIAAELHRTKT----------KDLRLDGKLCYLPESQAFRYGVA 69
           L    +  F L A   C++AE  + K           KDL+ DG+ CYLPE++AF  G+A
Sbjct: 17  LFFMFIFLFGLAAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGLGIA 76

Query: 70  ALACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILL 129
           AL C+ +AQ++GNV+ C       RG    D  + R +I  IILL    +  +F V + L
Sbjct: 77  ALVCVSVAQIVGNVVIC-------RGFTKTD--KTRTTIFCIILLLF--SWVNFAVAVTL 136

Query: 130 LSAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDE 186
           +S   SM+R+Q YG GWL+ ECYLVK GV+ A+  L + +  +I+ +    ++ SLQ++ 
Sbjct: 137 ISVGASMNREQIYGKGWLNRECYLVKDGVFAASGFLSVTTMAAILGAFAFKVKPSLQVEN 191

[Close]

BLAST of CmoCh04G006410 vs. TAIR10
Match: AT4G19370.1 (AT4G19370.1 Protein of unknown function (DUF1218))

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 62/165 (37.58%), Postives = 99/165 (60.00%), Query Frame = 1


Query: 13  SIVVSFALVAIVSCIAAELHRTKTKDLRLDGKL-CYLPESQAFRYGVAALACLVIAQVIG 72
           S+V S  LV+ ++C AAE  RT+ +D+R D +  CY+P S AF  G AA+ C  +AQ++G
Sbjct: 8   SVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIVG 67

Query: 73  NVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILLLSAATSMSRQQQ 132
           N++   +    +R K+ +  +    ++  ++LL    + ++F VV+L+LS A SMSR Q 
Sbjct: 68  NIVVFRNH--RTRTKREDGYKITDLTLPTVLLL---LSWSNFVVVVLILSTAISMSRAQA 127

Query: 133 YGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQ 177
           YG GWL  +CYLVK GV+ A+  L ++   ++  SA  +  K  Q
Sbjct: 128 YGEGWLDEDCYLVKDGVFAASGCLAILGLGALTISATRIKVKKQQ 167

[Close]

BLAST of CmoCh04G006410 vs. NCBI nr
Match: gi|778691219|ref|XP_011653242.1| (PREDICTED: uncharacterized protein LOC105435192 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 1.7e-59
Identity = 136/188 (72.34%), Postives = 154/188 (81.91%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           M K RF YALSLSIVVS AL+A VSC+AAELHRTKTKDL+LDGKLCYLPESQAF YGVAA
Sbjct: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILLL 120
           LACLV+AQVIGN+L CTSCS+NSR KK ++Q  P+R  LA   L +  + ASFTVVILLL
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQP-PKRPNLATFFLVV--SWASFTVVILLL 120

Query: 121 SAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDES 180
           S A+SMSRQQ Y  GWL GECYLVKSGVY+AAAILIL+S CS V SAV V     +I+ES
Sbjct: 121 STASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTV-----RINES 180

Query: 181 RKTSTLPK 189
           RK++TLPK
Sbjct: 181 RKSTTLPK 180

[Close]

BLAST of CmoCh04G006410 vs. NCBI nr
Match: gi|659101933|ref|XP_008451867.1| (PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 133/188 (70.74%), Postives = 153/188 (81.38%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           M K  F YALSLSIVVS AL+A VSC+AAELHRTKTKDL+LDGKLCYLPESQAF YGVAA
Sbjct: 1   MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILLL 120
           LACLV+AQVIGN+L CTSCS+NSR KK ++Q  P+R  LA   L +  + ASFTVVILLL
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQP-PKRPNLATFFLVV--SWASFTVVILLL 120

Query: 121 SAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDES 180
            AA+SMSRQQ Y  GWL GECYLVKSGVY+AAAILIL+S C+ V SAV V     +++ES
Sbjct: 121 IAASSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICTTVGSAVTV-----RMNES 180

Query: 181 RKTSTLPK 189
           RK++TLPK
Sbjct: 181 RKSTTLPK 180

[Close]

BLAST of CmoCh04G006410 vs. NCBI nr
Match: gi|1009157750|ref|XP_015896921.1| (PREDICTED: uncharacterized protein LOC107430585 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 81/179 (45.25%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           MEK R+ + L LS++ S  L++ VSCI AE  +TK KD++L G+LCYLPES A  +G+AA
Sbjct: 1   MEKNRYGFLLILSVIASLGLMSCVSCIVAEFKKTKVKDVKLVGRLCYLPESHALGFGIAA 60

Query: 61  LACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVILLL 120
           L CL +AQ+IGNV+ C +     RG       +P  S   +++     +   F + + L+
Sbjct: 61  LICLSVAQIIGNVIICGNFCSKQRGISYCKANKPLISTFLLLI-----SWIGFGIAVALI 120

Query: 121 SAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQIDE 180
           S ATSMS +Q YG GWL GECYLVK GVYI +A L+L +  SI+ S +  +RK+ Q+D+
Sbjct: 121 STATSMSLKQAYGTGWLDGECYLVKDGVYIGSAFLVLFTVVSILGSTLTTIRKT-QVDQ 173

[Close]

BLAST of CmoCh04G006410 vs. NCBI nr
Match: gi|645265101|ref|XP_008237992.1| (PREDICTED: uncharacterized protein LOC103336680 [Prunus mume])

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 1


Query: 1   MEKRRFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGVAA 60
           MEK ++   L L +V S  LV+I+SCIAAE+ +TK ++LR+ G+LC+LPESQAF +GVAA
Sbjct: 1   MEKHQYELVLILFVVASLGLVSIISCIAAEIKKTKEEELRMVGRLCHLPESQAFGFGVAA 60

Query: 61  LACLVIAQVIGNVLFCT-SCSLNSRGKKSNDQQRPRRSILAIILLNLQ-RNLASFTVVIL 120
           L CL  AQ++GN++ CT  CS   + K  +D     ++    I + L   +  SF + + 
Sbjct: 61  LICLFAAQMVGNLIVCTYFCSRERKKKGGSDFSISSKAKTPTIWMALVCISWTSFVMAVT 120

Query: 121 LLSAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQID 180
           LLSAATSMSR Q YG GWL G+CYLVK G+YI + IL+L++  S +   +    +  Q+D
Sbjct: 121 LLSAATSMSRDQPYGQGWLDGQCYLVKQGIYIGSGILVLIANGSTIGLIIITTMRKTQVD 180

Query: 181 ESRKTSTLPK 189
           E  K     K
Sbjct: 181 EGSKVKEQSK 190

[Close]

BLAST of CmoCh04G006410 vs. NCBI nr
Match: gi|568857832|ref|XP_006482468.1| (PREDICTED: uncharacterized protein LOC102625276 [Citrus sinensis])

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 1


Query: 1   MEKR--RFVYALSLSIVVSFALVAIVSCIAAELHRTKTKDLRLDGKLCYLPESQAFRYGV 60
           MEK+  R+ +   L I++S  LV+ +SC+ AE  + K KDL+LDGKLCYLPES A   G+
Sbjct: 1   MEKKHHRYGFVFVLCIIISLDLVSFISCLIAEAKKAKRKDLKLDGKLCYLPESHAHELGI 60

Query: 61  AALACLVIAQVIGNVLFCTSCSLNSRGKKSNDQQRPRRSILAIILLNLQRNLASFTVVIL 120
           AAL CL +AQVIGN+L C      +R K++N + +  R   A+++L    +  SF V ++
Sbjct: 61  AALICLGVAQVIGNLLICR--IFCTRDKRNNCKTQKLRIATALLVL----SWISFGVAVI 120

Query: 121 LLSAATSMSRQQQYGAGWLSGECYLVKSGVYIAAAILILVSTCSIVCSAVAVLRKSLQID 180
           LL AATSMSR+Q YG GWL  ECYLVK GV++ +  L+LVS+ SIV +A+   +   Q++
Sbjct: 121 LLGAATSMSRKQPYGKGWLDRECYLVKDGVFVGSGGLVLVSSGSIVAAAIVSSQIKTQVE 178

Query: 181 ESRK 183
           + RK
Sbjct: 181 QRRK 178

The following BLAST results are available for this feature:

BLAST of CmoCh04G006410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G006410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYL9_CUCSA	1.2e-59	72.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056580 PE=4 SV=1	[more]
V4T3Z0_9ROSI	6.1e-32	46.20	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012886mg PE=4 SV=1	[more]
A0A067FY76_CITSI	6.1e-32	46.20	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030101mg PE=4 SV=1	[more]
A0A067L150_JATCU	8.0e-32	45.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06716 PE=4 SV=1	[more]
M5W9J1_PRUPE	1.4e-31	43.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023572mg PE=4 SV=1	[more]

BLAST of CmoCh04G006410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31720.1	5.5e-24	37.10	Protein of unknown function (DUF1218)	[more]
AT4G19370.1	1.1e-21	37.58	Protein of unknown function (DUF1218)	[more]

BLAST of CmoCh04G006410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691219\|ref\|XP_011653242.1\|	1.7e-59	72.34	PREDICTED: uncharacterized protein LOC105435192 [Cucumis sativus]	[more]
gi\|659101933\|ref\|XP_008451867.1\|	1.2e-57	70.74	PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo]	[more]
gi\|1009157750\|ref\|XP_015896921.1\|	1.0e-32	45.25	PREDICTED: uncharacterized protein LOC107430585 isoform X1 [Ziziphus jujuba]	[more]
gi\|645265101\|ref\|XP_008237992.1\|	1.4e-32	44.74	PREDICTED: uncharacterized protein LOC103336680 [Prunus mume]	[more]
gi\|568857832\|ref\|XP_006482468.1\|	2.3e-32	46.74	PREDICTED: uncharacterized protein LOC102625276 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006410.1	CmoCh04G006410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 60..160 score: 1.0
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..185 score: 3.2
None	No IPR available	PANTHER	PTHR31769:SF6	SUBFAMILY NOT NAMED	coord: 1..185 score: 3.2
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G006410	CmaCh04G005990	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006410	Cla005459	Watermelon (97103) v1	cmowmB686
CmoCh04G006410	Csa4G056580	Cucumber (Chinese Long) v2	cmocuB699
CmoCh04G006410	MELO3C016217	Melon (DHL92) v3.5.1	cmomeB687
CmoCh04G006410	ClCG07G011130	Watermelon (Charleston Gray)	cmowcgB677
CmoCh04G006410	CSPI04G06910	Wild cucumber (PI 183967)	cmocpiB707
CmoCh04G006410	Cp4.1LG01g01270	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006410	MELO3C016217.2	Melon (DHL92) v3.6.1	cmomedB780
CmoCh04G006410	CsaV3_4G007120	Cucumber (Chinese Long) v3	cmocucB0827
CmoCh04G006410	Cla97C07G137860	Watermelon (97103) v2	cmowmbB756
CmoCh04G006410	Bhi01G002355	Wax gourd	cmowgoB0844
CmoCh04G006410	CsGy4G006840	Cucumber (Gy14) v2	cgybcmoB515
CmoCh04G006410	Carg13147	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G006410	Silver-seed gourd	carcmoB0902
CmoCh04G006410	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh04G006410	Cucurbita maxima (Rimu)	cmacmoB340
CmoCh04G006410	Melon (DHL92) v3.5.1	cmomeB697
CmoCh04G006410	Cucurbita pepo (Zucchini)	cmocpeB670
CmoCh04G006410	Bottle gourd (USVL1VR-Ls)	cmolsiB689