Cla005459 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005459
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218
Location	Chr7 : 28485075 .. 28486033 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACACCGTTTTGGCTACGCCTTAAGCCTCTCCATCGTTGTCTCACTCGCACTCGTTGCCTTTGTCTCGTGTGTAGCTGCAGAATTACACAGAACACAGGTACAGAATCACAAGTCTCTTTGTTAAATAAGATTTTGGTTTTAGATTAACTTTCCCACTGTTTTTGGTAGACGAAAGACCTCAAGTTGGATGGGAAGCTGTGCTATTTGCCAGGAAGTCAAGCATTTGGATATGGAGTTGCAGCTTTGGCGTGTTTGGTTGTGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTTTCAATTCAAGAGAGAAGAAGAGCAGTGAACAGTCTCCTAAAAGACCAAACTTAGCAACAATTTTTCTTGTTGTTTCATGGTAGGTGTGATTTATTTCCCTCGTTTTAACTGTTTCATCAACCTTCAAGAATTCTTTCAAATCACCAATCAATAGGCATAATTCTCCCATATATTCAATAACTCATCATCTAATCTCATTCATCTTCAAATGAAATTTAATTTGATAATGTTTCATTCTTCTGATTCAGAATCTTCAAAGAAATTTGCAAGACTTCCAGAGCAAAATAAGAATCCCCCCTCCCCACCCCCCAGCCCAATCCCAACCCCAACCCCAAATTTCAGGAATGAAAGACAGTTGATTATATCACGAACAAAAATTCAATTCAAATCGAAATATAATTGAAGAAGGGATTTGATGTTCTAGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGCCGCGTCGAGTATGAGCAGACGGCAGCCGTACGCGGCGGGATGGTTGGGCGGCGAGTGCTACTTGGTGAAAAACGGTGTATACGTCGCCGCAGCAATTCTTATCCTCATCTCGACATGCTCAACCGTAGGCTCCGCCGTAACAGTTCAGATCAACGAATCCAGAAAATCTACCACACTGCCAAAATGA

mRNA sequence

ATGGAAAAACACCGTTTTGGCTACGCCTTAAGCCTCTCCATCGTTGTCTCACTCGCACTCGTTGCCTTTGTCTCGTGTGTAGCTGCAGAATTACACAGAACACAGACGAAAGACCTCAAGTTGGATGGGAAGCTGTGCTATTTGCCAGGAAGTCAAGCATTTGGATATGGAGTTGCAGCTTTGGCGTGTTTGGTTGTGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTTTCAATTCAAGAGAGAAGAAGAGCAGTGAACAGTCTCCTAAAAGACCAAACTTAGCAACAATTTTTCTTGTTGTTTCATGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGCCGCGTCGAGTATGAGCAGACGGCAGCCGTACGCGGCGGGATGGTTGGGCGGCGAGTGCTACTTGGTGAAAAACGGTGTATACGTCGCCGCAGCAATTCTTATCCTCATCTCGACATGCTCAACCGTAGGCTCCGCCGTAACAGTTCAGATCAACGAATCCAGAAAATCTACCACACTGCCAAAATGA

Coding sequence (CDS)

ATGGAAAAACACCGTTTTGGCTACGCCTTAAGCCTCTCCATCGTTGTCTCACTCGCACTCGTTGCCTTTGTCTCGTGTGTAGCTGCAGAATTACACAGAACACAGACGAAAGACCTCAAGTTGGATGGGAAGCTGTGCTATTTGCCAGGAAGTCAAGCATTTGGATATGGAGTTGCAGCTTTGGCGTGTTTGGTTGTGGCTCAAGTTATTGGGAATATTTTACTTTGCACGAGTTGCAGTTTCAATTCAAGAGAGAAGAAGAGCAGTGAACAGTCTCCTAAAAGACCAAACTTAGCAACAATTTTTCTTGTTGTTTCATGGGCAAGCTTTACCGTGGTGATATTGCTACTGAGCGCCGCGTCGAGTATGAGCAGACGGCAGCCGTACGCGGCGGGATGGTTGGGCGGCGAGTGCTACTTGGTGAAAAACGGTGTATACGTCGCCGCAGCAATTCTTATCCTCATCTCGACATGCTCAACCGTAGGCTCCGCCGTAACAGTTCAGATCAACGAATCCAGAAAATCTACCACACTGCCAAAATGA

Protein sequence

MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAALACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAASSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVTVQINESRKSTTLPK

Homology

[Close]

BLAST of Cla005459 vs. TrEMBL
Match: A0A0A0KYL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056580 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.2e-85
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           M KHRFGYALSLSIVVSLAL+AFVSCVAAELHRT+TKDLKLDGKLCYLP SQAFGYGVAA
Sbjct: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAA 120
           LACLV+AQVIGNILLCTSCS NSREKK SEQ PKRPNLAT FLVVSWASFTVVILLLS A
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120

Query: 121 SSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVTVQINESRKSTTLPK 180
           SSMSR+QPYA GWLGGECYLVK+GVYVAAAILILIS CSTVGSAVTV+INESRKSTTLPK
Sbjct: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180

[Close]

BLAST of Cla005459 vs. TrEMBL
Match: A0A061G695_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016706 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.1e-41
Identity = 88/178 (49.44%), Postives = 124/178 (69.66%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           M KHR G+ L  S + SL LV+F SC+ AE  R +  DLKLDGKLC+LP S+AFG+GVAA
Sbjct: 1   MGKHRVGFVLIFSAIASLGLVSFASCLVAEAKRPKKGDLKLDGKLCFLPTSRAFGFGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAA 120
           L CL +AQ+IGN+ +  +C +  + +K+     K+P L  I L +SW SF V ++LLSAA
Sbjct: 61  LICLSIAQIIGNVAIWANCWWRGKARKA-----KKPFLTAILLAISWISFGVAVILLSAA 120

Query: 121 SSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSA---VTV-QINESRK 175
            SMSR QPY  GWL GECYLV++GVY+++ +L L +  + +G+A   +TV Q+++ +K
Sbjct: 121 MSMSRTQPYGEGWLDGECYLVRDGVYISSGVLSLAALFALLGAAAMMITVDQVDQGQK 173

[Close]

BLAST of Cla005459 vs. TrEMBL
Match: M5W9J1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023572mg PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.3e-41
Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           MEKH++   L L +V  L LV+ +SC+AAE+ +T+ ++L++ G+LC+LP SQAFG+GVAA
Sbjct: 1   MEKHQYELVLILFVVACLGLVSIISCIAAEIKKTKEEELRVIGRLCHLPESQAFGFGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSS-----EQSPKRPNLATIFLVVSWASFTVVIL 120
           L CL  AQ++GN+++CT      R+KKS          K P +      +SW SF + + 
Sbjct: 61  LICLFAAQMVGNLIVCTYFCSRERKKKSGSDFSISSKAKTPTIWMALACISWTSFVMAVT 120

Query: 121 LLSAASSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVTV------QI 180
           LLSAA+SMSR QPY  GWL G+CYLVK G+Y+ + IL+LI+  ST+G  + +      Q+
Sbjct: 121 LLSAATSMSRDQPYGQGWLDGQCYLVKQGIYIGSGILVLIAIGSTLGLIIIITTMRQTQV 180

[Close]

BLAST of Cla005459 vs. TrEMBL
Match: A0A067L150_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06716 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.0e-41
Identity = 84/165 (50.91%), Postives = 122/165 (73.94%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           MEKH +G+ L  SI++SLAL++FVSC+ AE  + + ++++LD KLCYLP S+AFG+G+AA
Sbjct: 1   MEKHLYGFLLIFSIIISLALLSFVSCILAEFKKAKKEEVRLDNKLCYLPESRAFGFGIAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATI-FLVVSWASFTVVILLLSA 120
           LA LV+AQVIGN+++C +       K+      KRPNL TI FLV+SW SF V +++LSA
Sbjct: 61  LAFLVIAQVIGNMIICRNFWL---RKEGITSKTKRPNLITIAFLVLSWMSFGVAVIILSA 120

Query: 121 ASSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSA 165
           A+SMSR+Q Y  GWL  +CY+VK+GVY  + IL+L+   +T+ ++
Sbjct: 121 ATSMSRKQEYGKGWLDQDCYIVKDGVYFGSGILVLLCIAATLATS 162

[Close]

BLAST of Cla005459 vs. TrEMBL
Match: B9N0P4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24320g PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.9e-40
Identity = 86/167 (51.50%), Postives = 122/167 (73.05%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLAL--VAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGV 60
           M +H++G+ L  SI+VSL+L  V+FVSCV AE  + + +DLKL  KLC LP S AFG+G+
Sbjct: 1   MARHQYGFLLIFSIIVSLSLSLVSFVSCVLAESKKAKKEDLKLSNKLCELPQSHAFGFGI 60

Query: 61  AALACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLS 120
           AAL  LV+AQVIGN+++CT   F  RE  +S ++ K+P +AT  LV SW SF + + LLS
Sbjct: 61  AALIWLVIAQVIGNVMICTL--FRHRENSNSSKA-KKPKIATGLLVFSWISFGIAVALLS 120

Query: 121 AASSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAV 166
            A+SMSRRQ Y  GWL  ECY+V++GV++ + +LIL++T + +GSA+
Sbjct: 121 TATSMSRRQAYGKGWLDHECYVVRDGVFIGSGVLILVTTATLLGSAI 164

[Close]

BLAST of Cla005459 vs. NCBI nr
Match: gi|778691219|ref|XP_011653242.1| (PREDICTED: uncharacterized protein LOC105435192 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.7e-85
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           M KHRFGYALSLSIVVSLAL+AFVSCVAAELHRT+TKDLKLDGKLCYLP SQAFGYGVAA
Sbjct: 1   MGKHRFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAA 120
           LACLV+AQVIGNILLCTSCS NSREKK SEQ PKRPNLAT FLVVSWASFTVVILLLS A
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLSTA 120

Query: 121 SSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVTVQINESRKSTTLPK 180
           SSMSR+QPYA GWLGGECYLVK+GVYVAAAILILIS CSTVGSAVTV+INESRKSTTLPK
Sbjct: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICSTVGSAVTVRINESRKSTTLPK 180

[Close]

BLAST of Cla005459 vs. NCBI nr
Match: gi|659101933|ref|XP_008451867.1| (PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           M KH FGYALSLSIVVSLAL+AFVSCVAAELHRT+TKDLKLDGKLCYLP SQAFGYGVAA
Sbjct: 1   MGKHCFGYALSLSIVVSLALIAFVSCVAAELHRTKTKDLKLDGKLCYLPESQAFGYGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAA 120
           LACLV+AQVIGNILLCTSCS NSREKK SEQ PKRPNLAT FLVVSWASFTVVILLL AA
Sbjct: 61  LACLVMAQVIGNILLCTSCSINSREKKRSEQPPKRPNLATFFLVVSWASFTVVILLLIAA 120

Query: 121 SSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVTVQINESRKSTTLPK 180
           SSMSR+QPYA GWLGGECYLVK+GVYVAAAILILIS C+TVGSAVTV++NESRKSTTLPK
Sbjct: 121 SSMSRQQPYATGWLGGECYLVKSGVYVAAAILILISICTTVGSAVTVRMNESRKSTTLPK 180

[Close]

BLAST of Cla005459 vs. NCBI nr
Match: gi|470129578|ref|XP_004300687.1| (PREDICTED: uncharacterized protein LOC101301013 [Fragaria vesca subsp. vesca])

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-41
Identity = 87/166 (52.41%), Postives = 117/166 (70.48%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           MEKH++G  L++S+V SL +V+FVSC+AAE  R +  ++KL G+LC LP S AF +G+AA
Sbjct: 1   MEKHQYGLVLTVSVVASLGVVSFVSCIAAETKRIREDEVKLVGRLCKLPESHAFVFGIAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAA 120
           L CLVVAQVIGN L      F S EKKSS    K+P +    L +SW SF + + L+S A
Sbjct: 61  LICLVVAQVIGN-LAAIRIHFCSTEKKSSGSKAKQPAILIALLFISWVSFVIAVTLISTA 120

Query: 121 SSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVT 167
           +SMSR+Q Y  GWL GECYLVK G+Y+ + IL+L++  ST+G A+T
Sbjct: 121 TSMSRKQSYGEGWLDGECYLVKQGIYIGSGILVLVTVGSTLGLAIT 165

[Close]

BLAST of Cla005459 vs. NCBI nr
Match: gi|590680502|ref|XP_007040879.1| (Uncharacterized protein TCM_016706 [Theobroma cacao])

HSP 1 Score: 176.4 bits (446), Expect = 4.5e-41
Identity = 88/178 (49.44%), Postives = 124/178 (69.66%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           M KHR G+ L  S + SL LV+F SC+ AE  R +  DLKLDGKLC+LP S+AFG+GVAA
Sbjct: 1   MGKHRVGFVLIFSAIASLGLVSFASCLVAEAKRPKKGDLKLDGKLCFLPTSRAFGFGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSSEQSPKRPNLATIFLVVSWASFTVVILLLSAA 120
           L CL +AQ+IGN+ +  +C +  + +K+     K+P L  I L +SW SF V ++LLSAA
Sbjct: 61  LICLSIAQIIGNVAIWANCWWRGKARKA-----KKPFLTAILLAISWISFGVAVILLSAA 120

Query: 121 SSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSA---VTV-QINESRK 175
            SMSR QPY  GWL GECYLV++GVY+++ +L L +  + +G+A   +TV Q+++ +K
Sbjct: 121 MSMSRTQPYGEGWLDGECYLVRDGVYISSGVLSLAALFALLGAAAMMITVDQVDQGQK 173

[Close]

BLAST of Cla005459 vs. NCBI nr
Match: gi|595844630|ref|XP_007208772.1| (hypothetical protein PRUPE_ppa023572mg [Prunus persica])

HSP 1 Score: 175.6 bits (444), Expect = 7.6e-41
Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 1


Query: 1   MEKHRFGYALSLSIVVSLALVAFVSCVAAELHRTQTKDLKLDGKLCYLPGSQAFGYGVAA 60
           MEKH++   L L +V  L LV+ +SC+AAE+ +T+ ++L++ G+LC+LP SQAFG+GVAA
Sbjct: 1   MEKHQYELVLILFVVACLGLVSIISCIAAEIKKTKEEELRVIGRLCHLPESQAFGFGVAA 60

Query: 61  LACLVVAQVIGNILLCTSCSFNSREKKSS-----EQSPKRPNLATIFLVVSWASFTVVIL 120
           L CL  AQ++GN+++CT      R+KKS          K P +      +SW SF + + 
Sbjct: 61  LICLFAAQMVGNLIVCTYFCSRERKKKSGSDFSISSKAKTPTIWMALACISWTSFVMAVT 120

Query: 121 LLSAASSMSRRQPYAAGWLGGECYLVKNGVYVAAAILILISTCSTVGSAVTV------QI 180
           LLSAA+SMSR QPY  GWL G+CYLVK G+Y+ + IL+LI+  ST+G  + +      Q+
Sbjct: 121 LLSAATSMSRDQPYGQGWLDGQCYLVKQGIYIGSGILVLIAIGSTLGLIIIITTMRQTQV 180

The following BLAST results are available for this feature:

BLAST of Cla005459 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYL9_CUCSA	1.2e-85	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056580 PE=4 SV=1	[more]
A0A061G695_THECC	3.1e-41	49.44	Uncharacterized protein OS=Theobroma cacao GN=TCM_016706 PE=4 SV=1	[more]
M5W9J1_PRUPE	5.3e-41	45.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023572mg PE=4 SV=1	[more]
A0A067L150_JATCU	9.0e-41	50.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06716 PE=4 SV=1	[more]
B9N0P4_POPTR	5.9e-40	51.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24320g PE=4 SV=1	[more]

BLAST of Cla005459 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691219\|ref\|XP_011653242.1\|	1.7e-85	91.67	PREDICTED: uncharacterized protein LOC105435192 [Cucumis sativus]	[more]
gi\|659101933\|ref\|XP_008451867.1\|	1.2e-83	90.00	PREDICTED: uncharacterized protein LOC103493027 [Cucumis melo]	[more]
gi\|470129578\|ref\|XP_004300687.1\|	1.5e-41	52.41	PREDICTED: uncharacterized protein LOC101301013 [Fragaria vesca subsp. vesca]	[more]
gi\|590680502\|ref\|XP_007040879.1\|	4.5e-41	49.44	Uncharacterized protein TCM_016706 [Theobroma cacao]	[more]
gi\|595844630\|ref\|XP_007208772.1\|	7.6e-41	45.03	hypothetical protein PRUPE_ppa023572mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009808	lignin metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU46193	watermelon EST collection version 2.0	transcribed_cluster
WMU51273	watermelon EST collection version 2.0	transcribed_cluster
WMU55554	watermelon EST collection version 2.0	transcribed_cluster
WMU72014	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005459	Cla005459.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU46193	WMU46193	transcribed_cluster
WMU51273	WMU51273	transcribed_cluster
WMU72014	WMU72014	transcribed_cluster
WMU55554	WMU55554	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 60..157 score: 2.3
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..166 score: 6.2
None	No IPR available	PANTHER	PTHR31769:SF6	SUBFAMILY NOT NAMED	coord: 1..166 score: 6.2
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005459	Cla97C07G137860	Watermelon (97103) v2	wmwmbB168
Cla005459	Csa4G056580	Cucumber (Chinese Long) v2	cuwmB311
Cla005459	MELO3C016217	Melon (DHL92) v3.5.1	mewmB517
Cla005459	ClCG07G011130	Watermelon (Charleston Gray)	wcgwmB366
Cla005459	CSPI04G06910	Wild cucumber (PI 183967)	cpiwmB314
Cla005459	CmaCh04G005990	Cucurbita maxima (Rimu)	cmawmB692
Cla005459	CmoCh04G006410	Cucurbita moschata (Rifu)	cmowmB686
Cla005459	Cp4.1LG01g01270	Cucurbita pepo (Zucchini)	cpewmB419
Cla005459	CsGy4G006840	Cucumber (Gy14) v2	cgybwmB289
Cla005459	MELO3C016217.2	Melon (DHL92) v3.6.1	medwmB503
Cla005459	Carg13147	Silver-seed gourd	carwmB0043
Cla005459	CsaV3_4G007120	Cucumber (Chinese Long) v3	cucwmB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005459	Silver-seed gourd	carwmB0652
Cla005459	Wax gourd	wgowmB188
Cla005459	Cucumber (Gy14) v1	cgywmB432
Cla005459	Cucurbita maxima (Rimu)	cmawmB308
Cla005459	Cucurbita moschata (Rifu)	cmowmB302
Cla005459	Melon (DHL92) v3.5.1	mewmB508
Cla005459	Cucurbita pepo (Zucchini)	cpewmB219
Cla005459	Bottle gourd (USVL1VR-Ls)	lsiwmB440