CsaV3_3G004370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA polymerase II elongation factor ELL3 isoform 1
Locationchr3 : 3698590 .. 3700092 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGTGGAAAAAGAAATATATCCGTTGGAAAATCACATTCATCACTCGCATCAGGCGTTATTCAACAAACAACCCTTTAAGTATCTTCAAAACTCAACAAAATTCCAATTCCAAACTCAAAATCATCGAAGTTCAAATCTCCAATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGGTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATTATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAATTGCCATTCGTCAGGTAAAACCTCCTTATAATGTGATTCTTTTTTCGGTAAATTGCAATAAACAACACGAAAGTATGGTAGGAGTTGCCAATTTCTACAAATATTATATGTTCGAAGTTTTAACATCAATTGAGTCAACTTTTATCATTGAAAGTTCCAAGGGGTGTAAGATGTTACAATTTGCTCTTATTTTTTTTAGGTTTGTTGGTGGCAGCTTAGTTGAATAATTCTTCTTGGATTTTTTTCTCACTATGACAAATGTCAAAATGGGTTGATATTTTGGTTTCTAACAATTTGGGTTTTGATGTAAATAAAGCAGCAGGTGCTTGAAGAATTAAATATGCAATGGAGGATGAAGCAAGATGGGTCCGACATAAAAAATATCATTAGAGGGAAGCAAGGGAGGCTCCATTTTTGTAGAATCTTTACAAATTATGAAGAGAAGGATAGTGAGGAAAGTGTTGGCTTTTGAAGTGAACTAAAAATCAGTGTTAATTAAGGCAACACTGCTTGTGTGACAACTTTTTGTTTTGGCTTTCTAAGCCTAATTAATGACTTGTCAATTTTGAAATTGGCCATATGTAACTTTTTGGCTATTTA

mRNA sequence

ATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGGTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATTATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAA

Coding sequence (CDS)

ATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGGTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATTATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAA

Protein sequence

MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF
Homology
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BLAST of CsaV3_3G004370 vs. NCBI nr
Match: XP_004149573.1 (PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_3G061020 [Cucumis sativus])

HSP 1 Score: 434.5 bits (1116), Expect = 2.1e-118
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
           EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

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BLAST of CsaV3_3G004370 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 423.3 bits (1087), Expect = 4.9e-115
Identity = 209/217 (96.31%), Postives = 213/217 (98.16%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
           EIKWGPLTWFSRNFI ISLLGFSAI+F  SKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

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BLAST of CsaV3_3G004370 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 179/214 (83.64%), Postives = 194/214 (90.65%), Query Frame = 0 

Query: 3   ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLR 62
           ET+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR
Sbjct: 4   ETRDSGAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 63

Query: 63  IGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFV 122
           +GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFV
Sbjct: 64  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 123

Query: 123 IVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEI 182
           IVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEI
Sbjct: 124 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 183

Query: 183 KWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 217
           KWGPLTW SRNF+TI LL FS I+F  SKFILCG
Sbjct: 184 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213

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BLAST of CsaV3_3G004370 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 354.8 bits (909), Expect = 2.2e-94
Identity = 180/215 (83.72%), Postives = 193/215 (89.77%), Query Frame = 0 

Query: 3   ETKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS AA HIVEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAATHIVEIPAE----NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 217
           IKWGPLTW SRNF+TI LL FS I+F  SKFILCG
Sbjct: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

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BLAST of CsaV3_3G004370 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 353.6 bits (906), Expect = 4.8e-94
Identity = 179/215 (83.26%), Postives = 193/215 (89.77%), Query Frame = 0 

Query: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 217
           IKWGPLT  SRNF+TI LL FS I+F  SKFILCG
Sbjct: 184 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

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BLAST of CsaV3_3G004370 vs. TAIR10
Match: AT5G56120.1 (unknown protein)

HSP 1 Score: 237.7 bits (605), Expect = 7.0e-63
Identity = 128/239 (53.56%), Postives = 163/239 (68.20%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNL-------------MISVIQHHPLRQISESSGHLL 60
           MA TKDS   H+VEIPV++E+  +               ++ VIQ HPL +ISES GHLL
Sbjct: 1   MAGTKDS---HVVEIPVDEEHKERQXXXQLVAVSNPGMGILKVIQQHPLSEISESPGHLL 60

Query: 61  LLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSS-------- 120
           LLKLWQR+E LF  R+  +E+++ES+K++IFQLCCFF +FH    TL+Y+SS        
Sbjct: 61  LLKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVV 120

Query: 121 -DPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRM 180
               VCKKWW+P+ V  ATS V V +VQ KL+++WK    + +E+ +NR LTRCV ELRM
Sbjct: 121 KSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRM 180

Query: 181 KGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
           KGS F+LSKEP  G RMKSSSVEIKW P+TWFS+  ITI LL  + + F  SKFILCGF
Sbjct: 181 KGSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

[Close]
BLAST of CsaV3_3G004370 vs. TAIR10
Match: AT3G12870.1 (unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14
Identity = 54/190 (28.42%), Postives = 93/190 (48.95%), Query Frame = 0 

Query: 34  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQL-------CCFFFL 93
           HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL             
Sbjct: 18  HPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIXXXXXXXXXXX 77

Query: 94  FHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTEN 153
                             K+ W+P++    +S   +  V+ K  +       L++EK + 
Sbjct: 78  XXXXXXXXXXXXXXXXXXKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKEDA 137

Query: 154 RALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLLGFSAI 213
           + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+     S +
Sbjct: 138 KLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSCL 197

Query: 214 IFVTSKFILC 216
           +    + ILC
Sbjct: 198 VLAMIRLILC 205

[Close]
BLAST of CsaV3_3G004370 vs. TrEMBL
Match: tr|A0A0A0L2U7|A0A0A0L2U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 1.4e-118
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
           EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

[Close]
BLAST of CsaV3_3G004370 vs. TrEMBL
Match: tr|A0A1S3BL81|A0A1S3BL81_CUCME (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 3.3e-115
Identity = 209/217 (96.31%), Postives = 213/217 (98.16%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
           EIKWGPLTWFSRNFI ISLLGFSAI+F  SKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

[Close]
BLAST of CsaV3_3G004370 vs. TrEMBL
Match: tr|M5WCP6|M5WCP6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G033100 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 6.0e-69
Identity = 136/225 (60.44%), Postives = 176/225 (78.22%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNL-----MISVIQHHPLRQISESSGHLLLLKLWQRD 60
           MAE KD   AH+VEIPV++E H Q L     +IS IQHHPL +ISES GHLLLLKLW+R+
Sbjct: 1   MAEMKD---AHVVEIPVDEE-HQQKLSSAMTIISAIQHHPLMEISESPGHLLLLKLWRRE 60

Query: 61  EHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS---SDPIVCKKWWVPAV 120
           E LFG RI R+E++M+S++++IFQLCCFF +FH   +T+L+TS   S+  +CKKWW+P++
Sbjct: 61  EDLFGRRIARKESRMDSIRREIFQLCCFFLIFHGFFMTILFTSSVNSEEHICKKWWIPSI 120

Query: 121 VIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIG 180
           +  +TS VFV +VQ+ L  YWK   QLQ+EKT+NRALTRC+QELRMKG+ F+LSKEPQ G
Sbjct: 121 LSVSTSFVFVFLVQVNLCRYWKVWNQLQREKTDNRALTRCIQELRMKGASFDLSKEPQSG 180

Query: 181 NRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
            RMKSSSVEIKW P+TW S+  ITI L+ F+ ++F  SKF+LCGF
Sbjct: 181 KRMKSSSVEIKWKPVTWCSQYLITICLVCFAGLVFPVSKFMLCGF 221

[Close]
BLAST of CsaV3_3G004370 vs. TrEMBL
Match: tr|A0A2P6QLA8|A0A2P6QLA8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.1e-68
Identity = 135/223 (60.54%), Postives = 173/223 (77.58%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNL-----MISVIQHHPLRQISESSGHLLLLKLWQRD 60
           MAE KD    H+VEIPV++E H Q L     +IS IQHHPL +ISES GHLLLLKLW+R+
Sbjct: 1   MAEMKD-CHHHVVEIPVDEE-HQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRRE 60

Query: 61  EHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS---SDPIVCKKWWVPAV 120
           E LFG RI RRET+M+ ++++IFQLCCFF +FHA  LT+L+TS   S+   C+KWW+P++
Sbjct: 61  EDLFGRRIARRETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSI 120

Query: 121 VIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIG 180
           +  +TS VFV++VQ+ LW YWK  GQLQ+EK ENRAL RC+QELRMKG+ F+LSKEPQ G
Sbjct: 121 LSVSTSVVFVVLVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSG 180

Query: 181 NRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILC 216
            R+KSSSVEIKW P+TW S+N ITI L+ F+ ++F  SK +LC
Sbjct: 181 KRLKSSSVEIKWKPITWCSQNLITICLVCFAGLVFPASKLMLC 221

[Close]
BLAST of CsaV3_3G004370 vs. TrEMBL
Match: tr|A0A1Q3C3F2|A0A1Q3C3F2_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18254 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.5e-67
Identity = 137/226 (60.62%), Postives = 175/226 (77.43%), Query Frame = 0 

Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLM-----ISVIQHHPLRQISESSGHLLLLKLWQRD 60
           MAE KD   AHIVEIPV++E H Q L+     IS IQ+HPL +IS++ GHLLLLKLWQR+
Sbjct: 1   MAEMKD---AHIVEIPVDEE-HQQKLLCAMNTISAIQNHPLMEISQNPGHLLLLKLWQRE 60

Query: 61  EHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSS--DPI--VCKKWWVPA 120
           E LFG RI  +E++M+S+K +IFQLCCFF +FH    TLL+TSS  D +   CKKWW+P+
Sbjct: 61  EDLFGRRISVKESRMDSIKTEIFQLCCFFLVFHGFLFTLLFTSSVNDKVDHTCKKWWIPS 120

Query: 121 VVIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQI 180
           ++  +TS VFV + Q+K++ YWK R QLQ+E+++NRALTRC+QELRMKG+ F+LSKEPQ 
Sbjct: 121 IIQVSTSLVFVFLAQVKIYRYWKVRKQLQRERSDNRALTRCIQELRMKGASFDLSKEPQS 180

Query: 181 GNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 218
           G RMKSSSVEI+W PLTW S+N ITI L+ F+ + F  SKFILCGF
Sbjct: 181 GRRMKSSSVEIEWKPLTWCSQNLITICLVCFTGLAFPASKFILCGF 222

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149573.12.1e-118100.00PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.... [more]
XP_008449068.14.9e-11596.31PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P... [more]
XP_023553388.11.4e-9683.64uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo][more]
XP_022965180.12.2e-9483.72uncharacterized protein LOC111465114 [Cucurbita maxima][more]
XP_022932317.14.8e-9483.26uncharacterized protein LOC111438709 [Cucurbita moschata][more]
BLAST of CsaV3_3G004370 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56120.17.0e-6353.56unknown protein[more]
AT3G12870.13.5e-1428.42unknown protein[more]
BLAST of CsaV3_3G004370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2U7|A0A0A0L2U7_CUCSA1.4e-118100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1[more]
tr|A0A1S3BL81|A0A1S3BL81_CUCME3.3e-11596.31uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=... [more]
tr|M5WCP6|M5WCP6_PRUPE6.0e-6960.44Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G033100 PE=4 SV=1[more]
tr|A0A2P6QLA8|A0A2P6QLA8_ROSCH5.1e-6860.54Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4... [more]
tr|A0A1Q3C3F2|A0A1Q3C3F2_CEPFO1.5e-6760.62Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18254 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004370.1CsaV3_3G004370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availablePANTHERPTHR33287FAMILY NOT NAMEDcoord: 6..216
NoneNo IPR availablePANTHERPTHR33287:SF7SUBFAMILY NOT NAMEDcoord: 6..216

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G004370CSPI03G04370Wild cucumber (PI 183967)cpicucB144
CsaV3_3G004370Cucsa.042280Cucumber (Gy14) v1cgycucB017
CsaV3_3G004370CmaCh16G009470Cucurbita maxima (Rimu)cmacucB0381
CsaV3_3G004370CmoCh16G009850Cucurbita moschata (Rifu)cmocucB0378
CsaV3_3G004370Cp4.1LG08g08600Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G004370Cp4.1LG14g07650Cucurbita pepo (Zucchini)cpecucB0256
CsaV3_3G004370CsGy3G004410Cucumber (Gy14) v2cgybcucB117
CsaV3_3G004370Carg23555Silver-seed gourdcarcucB0008
CsaV3_3G004370Carg22344Silver-seed gourdcarcucB0621
CsaV3_3G004370Cla004488Watermelon (97103) v1cucwmB210
CsaV3_3G004370MELO3C014130Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G004370ClCG10G004550Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G004370Lsi05G005190Bottle gourd (USVL1VR-Ls)cuclsiB217
CsaV3_3G004370MELO3C014130.2Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G004370Cla97C10G188990Watermelon (97103) v2cucwmbB182
CsaV3_3G004370Bhi11G000387Wax gourdcucwgoB223
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G004370Cucurbita pepo (Zucchini)cpecucB1064
CsaV3_3G004370Bottle gourd (USVL1VR-Ls)cuclsiB175
CsaV3_3G004370Wax gourdcucwgoB328
CsaV3_3G004370Cucurbita maxima (Rimu)cmacucB0659
CsaV3_3G004370Cucurbita maxima (Rimu)cmacucB0974
CsaV3_3G004370Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G004370Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G004370Cucurbita pepo (Zucchini)cpecucB0342