CmoCh16G009850 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G009850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA polymerase II elongation factor ELL3 isoform 1
LocationCmo_Chr16 : 6762346 .. 6762993 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTTGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTGCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTTGTTGTCTAGGAATTTCGTCACCATTGTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA

mRNA sequence

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTTGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTGCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTTGTTGTCTAGGAATTTCGTCACCATTGTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA

Coding sequence (CDS)

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTTGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTGCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTTGTTGTCTAGGAATTTCGTCACCATTGTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA
Homology
[Close]
BLAST of CmoCh16G009850 vs. TrEMBL
Match: A0A0A0L2U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-94
Identity = 179/215 (83.26%), Postives = 193/215 (89.77%), Query Frame = 1 

Query: 4   ETKDSGAAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           IKWGPLT  SRNF+TI LL FS I+F  SKFILCG
Sbjct: 183 IKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 216

[Close]
BLAST of CmoCh16G009850 vs. TrEMBL
Match: M5WCP6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011160mg PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.2e-65
Identity = 124/214 (57.94%), Postives = 164/214 (76.64%), Query Frame = 1 

Query: 12  AHVVEIPAENQN--------VMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGR 71
           AHVVEIP + ++         +IS I+ HPL +ISES GHLLLLKLW+REE LFG RI R
Sbjct: 7   AHVVEIPVDEEHQQKLSSAMTIISAIQHHPLMEISESPGHLLLLKLWRREEDLFGRRIAR 66

Query: 72  RETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS---DPNVCHKWWVPGVAMGATSGVFV 131
           +E++++S++++IFQLCC+F +FH   +T+LFTSS   + ++C KWW+P +   +TS VFV
Sbjct: 67  KESRMDSIRREIFQLCCFFLIFHGFFMTILFTSSVNSEEHICKKWWIPSILSVSTSFVFV 126

Query: 132 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 191
            +VQ+ L  YWK   QLQREK++NRALTRC+QELRMKG+ F+LSKEPQ G RMKSSSVEI
Sbjct: 127 FLVQVNLCRYWKVWNQLQREKTDNRALTRCIQELRMKGASFDLSKEPQSGKRMKSSSVEI 186

Query: 192 KWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           KW P+T  S+  +TI L+CF+G+VF  SKF+LCG
Sbjct: 187 KWKPVTWCSQYLITICLVCFAGLVFPVSKFMLCG 220

[Close]
BLAST of CmoCh16G009850 vs. TrEMBL
Match: B9T3X2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0169980 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.1e-64
Identity = 126/214 (58.88%), Postives = 162/214 (75.70%), Query Frame = 1 

Query: 12  AHVVEIPAENQN------VMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRE 71
           AH+VEIP   ++      VM + ++ HPL +IS S GHLLLLKLWQREE LF  +IG +E
Sbjct: 7   AHIVEIPVNEEHQEKQLCVMTAALQNHPLTEISSSPGHLLLLKLWQREEDLFNRKIGVKE 66

Query: 72  TKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN----VCHKWWVPGVAMGATSGVFVI 131
           T+++S+K++IFQLC +F +FH + LT+LFTSS  N     C KWW+P +   +TS VFV 
Sbjct: 67  TRMDSIKREIFQLCSFFLIFHGIFLTILFTSSSDNKEEHTCKKWWIPSLVSISTSLVFVS 126

Query: 132 VVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIK 191
           + Q+KL+ YWK   QLQRE+++NRALTRC+QELRMKGS F+LSKEPQ G RMKSSSVEIK
Sbjct: 127 LAQVKLFRYWKVWKQLQRERNDNRALTRCIQELRMKGSSFDLSKEPQCGKRMKSSSVEIK 186

Query: 192 WGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 216
           W P+T  S+  VTI L+CFSG++F ASKFILCG+
Sbjct: 187 WKPITWCSQYLVTICLVCFSGLLFPASKFILCGV 220

[Close]
BLAST of CmoCh16G009850 vs. TrEMBL
Match: V4UTR0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009431mg PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.1e-64
Identity = 129/214 (60.28%), Postives = 159/214 (74.30%), Query Frame = 1 

Query: 12  AHVVEIPAENQNVM--------ISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGR 71
           AHVVEIP + ++           + I+ HPL +IS+S GHLLLLKLWQREE LFG RI  
Sbjct: 7   AHVVEIPVDEEHQQKVLCCMNTTTAIQHHPLMEISQSPGHLLLLKLWQREEDLFGRRISL 66

Query: 72  RETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP----NVCHKWWVPGVAMGATSGVF 131
           +E++++S K++IFQLCC+F +FH   LTLLFTSS      + C KWW+P +   +TS VF
Sbjct: 67  KESRMDSSKREIFQLCCFFLVFHGFFLTLLFTSSVSPKYEHTCRKWWIPSILSLSTSLVF 126

Query: 132 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 191
           V +VQ KL+ YWK   QLQREK++NRALTRC+QELRMKG+ F+LSKEP  G RMKSSSVE
Sbjct: 127 VFLVQFKLYRYWKVCRQLQREKNDNRALTRCIQELRMKGASFDLSKEPLSGKRMKSSSVE 186

Query: 192 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILC 214
           IKW PLT  S+N +TI LLCFSG+VF ASKFILC
Sbjct: 187 IKWKPLTWCSQNVITICLLCFSGLVFPASKFILC 220

[Close]
BLAST of CmoCh16G009850 vs. TrEMBL
Match: A0A0S3S6E5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G191200 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.9e-63
Identity = 132/235 (56.17%), Postives = 166/235 (70.64%), Query Frame = 1 

Query: 4   ETKDSGAAAHVVEIPAENQ------NV-------MISVIEQHPLRQISESSGHLLLLKLW 63
           ETKD+    HVVEIP E +      NV       MI  IE HPL +ISES GHLLLLKLW
Sbjct: 3   ETKDT----HVVEIPVEQEHHLHPKNVLCSMTSNMIEAIEDHPLTEISESPGHLLLLKLW 62

Query: 64  QREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS----------SDPN 123
           QREE LF  RI  +ET+++++K ++FQL  +FF+FH   LTLLFTS          +  +
Sbjct: 63  QREEELFAKRIAHKETRMDTIKAELFQLSSFFFIFHGFFLTLLFTSWARAQKEAQQAHHS 122

Query: 124 VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSC 183
           VCHKWW+P +    TS VFV++VQ+K+  YWK   QLQRE+S+ RA+TRC+QELRMKG+ 
Sbjct: 123 VCHKWWLPSMLSLCTSLVFVVLVQVKVHRYWKVWGQLQRERSDGRAVTRCIQELRMKGAS 182

Query: 184 FNLSKEPQIGHRMKSSSVEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 216
           F+LSKEP  G RMKSSSVEIKWGPLT  S+N +TI L+CF+G++F ASK +LCGL
Sbjct: 183 FDLSKEPNSGKRMKSSSVEIKWGPLTWCSKNLLTISLVCFTGLMFPASKLVLCGL 233

[Close]
BLAST of CmoCh16G009850 vs. TAIR10
Match: AT5G56120.1 (AT5G56120.1 unknown protein)

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-60
Identity = 123/236 (52.12%), Postives = 158/236 (66.95%), Query Frame = 1 

Query: 5   TKDSGAAAHVVEIPAENQNV-----------------MISVIEQHPLRQISESSGHLLLL 64
           TKDS    HVVEIP + ++                  ++ VI+QHPL +ISES GHLLLL
Sbjct: 4   TKDS----HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLLL 63

Query: 65  KLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN------- 124
           KLWQREE LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS  +       
Sbjct: 64  KLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVKS 123

Query: 125 --VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKG 184
             VC KWW+P     ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKG
Sbjct: 124 NAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMKG 183

Query: 185 SCFNLSKEPQIGHRMKSSSVEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           S F+LSKEP  G RMKSSSVEIKW P+T  S+  +TIVLLC +G+ F  SKFILCG
Sbjct: 184 SSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCG 235

[Close]
BLAST of CmoCh16G009850 vs. TAIR10
Match: AT3G12870.1 (AT3G12870.1 unknown protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-24
Identity = 69/191 (36.13%), Postives = 109/191 (57.07%), Query Frame = 1 

Query: 31  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSL 90
           +HPL QI+++  H LLLK W +EE L   R+  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 91  TLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSE 150
            LLF       +S+  + C + W+P +    +S   +  V+ K  +       L+REK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 151 NRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTLLS-RNFVTIVLLCFSG 210
            + L +CV+EL+ KG  F+L KE     R KS  VE K  P+   S R+FVT+     S 
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSC 196

Query: 211 IVFGASKFILC 214
           +V    + ILC
Sbjct: 197 LVLAMIRLILC 205

[Close]
BLAST of CmoCh16G009850 vs. NCBI nr
Match: gi|659096388|ref|XP_008449068.1| (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 8.4e-95
Identity = 180/215 (83.72%), Postives = 192/215 (89.30%), Query Frame = 1 

Query: 4   ETKDSGAAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           +TKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183
           VIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 123 VIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           IKWGPLT  SRNF+ I LL FS IVF ASKFILCG
Sbjct: 183 IKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCG 216

[Close]
BLAST of CmoCh16G009850 vs. NCBI nr
Match: gi|449463707|ref|XP_004149573.1| (PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 1.4e-94
Identity = 179/215 (83.26%), Postives = 193/215 (89.77%), Query Frame = 1 

Query: 4   ETKDSGAAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           IKWGPLT  SRNF+TI LL FS I+F  SKFILCG
Sbjct: 183 IKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 216

[Close]
BLAST of CmoCh16G009850 vs. NCBI nr
Match: gi|470117481|ref|XP_004294886.1| (PREDICTED: uncharacterized protein LOC101294445 [Fragaria vesca subsp. vesca])

HSP 1 Score: 263.5 bits (672), Expect = 3.3e-67
Identity = 128/213 (60.09%), Postives = 162/213 (76.06%), Query Frame = 1 

Query: 13  HVVEIPAENQN--------VMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRR 72
           HVVEIP + ++         +IS I+ HPL +ISES GHLLLLKLW+REE LFG RI RR
Sbjct: 10  HVVEIPVDEEHQQKLSSAMTIISAIQHHPLTEISESPGHLLLLKLWRREEDLFGRRIARR 69

Query: 73  ETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS---DPNVCHKWWVPGVAMGATSGVFVI 132
           ET+++ ++++IFQLCC+F +FHA  LT+LFTSS   +   C KWW+P +   +TS VFV+
Sbjct: 70  ETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVSSEEGTCQKWWIPSILSVSTSVVFVV 129

Query: 133 VVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIK 192
           +VQ+ LW YWK   QLQREKSENR L RC+QELRMKG+ F+LSKEPQ G RMKSSSVEIK
Sbjct: 130 LVQVNLWRYWKVWGQLQREKSENRTLVRCIQELRMKGASFDLSKEPQSGKRMKSSSVEIK 189

Query: 193 WGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           W P+T  S+N +TI L+CF+G+VF ASK +LCG
Sbjct: 190 WKPITWCSQNLITICLVCFAGLVFPASKLMLCG 222

[Close]
BLAST of CmoCh16G009850 vs. NCBI nr
Match: gi|1009107712|ref|XP_015881120.1| (PREDICTED: uncharacterized protein LOC107417076 [Ziziphus jujuba])

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-65
Identity = 139/227 (61.23%), Postives = 167/227 (73.57%), Query Frame = 1 

Query: 4   ETKDSGAAAHVVEIP--AENQNVM-------ISVIEQHPLRQISESSGHLLLLKLWQREE 63
           E KD+    H+VEIP  AE+Q  M        + I+ HPL +IS S GHLLLLKLWQREE
Sbjct: 3   EMKDT----HIVEIPVDAEHQQKMQCAMDSISTAIQHHPLMEISGSPGHLLLLKLWQREE 62

Query: 64  HLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS------DPNVCHKWWVP 123
            LFG RI  +ET++ S+KQ+IFQLCC+F LFH   LT+LFTSS      D +VC KWW+P
Sbjct: 63  DLFGRRIALKETRMGSIKQEIFQLCCFFLLFHGFFLTMLFTSSVQPENQDHHVCKKWWLP 122

Query: 124 GVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQ 183
            +   ATS VFV++VQ+KL  YWK   QLQREKS+NRALTRC+QELRMKG+ F+LSKEPQ
Sbjct: 123 SLLSIATSFVFVVLVQIKLCGYWKVWKQLQREKSDNRALTRCIQELRMKGASFDLSKEPQ 182

Query: 184 IGHRMKSSSVEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 216
            G RMKSSSVEI W PLTL S+  +T+ L+CFSG+VF ASK ILCGL
Sbjct: 183 SGKRMKSSSVEITWKPLTLCSQYLITLCLVCFSGLVFPASKLILCGL 225

[Close]
BLAST of CmoCh16G009850 vs. NCBI nr
Match: gi|595829352|ref|XP_007205859.1| (hypothetical protein PRUPE_ppa011160mg [Prunus persica])

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 124/214 (57.94%), Postives = 164/214 (76.64%), Query Frame = 1 

Query: 12  AHVVEIPAENQN--------VMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGR 71
           AHVVEIP + ++         +IS I+ HPL +ISES GHLLLLKLW+REE LFG RI R
Sbjct: 7   AHVVEIPVDEEHQQKLSSAMTIISAIQHHPLMEISESPGHLLLLKLWRREEDLFGRRIAR 66

Query: 72  RETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS---DPNVCHKWWVPGVAMGATSGVFV 131
           +E++++S++++IFQLCC+F +FH   +T+LFTSS   + ++C KWW+P +   +TS VFV
Sbjct: 67  KESRMDSIRREIFQLCCFFLIFHGFFMTILFTSSVNSEEHICKKWWIPSILSVSTSFVFV 126

Query: 132 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 191
            +VQ+ L  YWK   QLQREK++NRALTRC+QELRMKG+ F+LSKEPQ G RMKSSSVEI
Sbjct: 127 FLVQVNLCRYWKVWNQLQREKTDNRALTRCIQELRMKGASFDLSKEPQSGKRMKSSSVEI 186

Query: 192 KWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 215
           KW P+T  S+  +TI L+CF+G+VF  SKF+LCG
Sbjct: 187 KWKPVTWCSQYLITICLVCFAGLVFPVSKFMLCG 220

The following BLAST results are available for this feature:
BLAST of CmoCh16G009850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G009850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2U7_CUCSA1.0e-9483.26Uncharacterized protein OS=Cucumis sativus GN=Csa_3G061020 PE=4 SV=1[more]
M5WCP6_PRUPE8.2e-6557.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011160mg PE=4 SV=1[more]
B9T3X2_RICCO3.1e-6458.88Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0169980 PE=4 SV=1[more]
V4UTR0_9ROSI3.1e-6460.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009431mg PE=4 SV=1[more]
A0A0S3S6E5_PHAAN5.9e-6356.17Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G191200 PE=... [more]
BLAST of CmoCh16G009850 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56120.13.2e-6052.12 unknown protein[more]
AT3G12870.12.2e-2436.13 unknown protein[more]
BLAST of CmoCh16G009850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096388|ref|XP_008449068.1|8.4e-9583.72PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo][more]
gi|449463707|ref|XP_004149573.1|1.4e-9483.26PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus][more]
gi|470117481|ref|XP_004294886.1|3.3e-6760.09PREDICTED: uncharacterized protein LOC101294445 [Fragaria vesca subsp. vesca][more]
gi|1009107712|ref|XP_015881120.1|3.1e-6561.23PREDICTED: uncharacterized protein LOC107417076 [Ziziphus jujuba][more]
gi|595829352|ref|XP_007205859.1|1.2e-6457.94hypothetical protein PRUPE_ppa011160mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G009850.1CmoCh16G009850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 137..157
scor
NoneNo IPR availablePANTHERPTHR33287FAMILY NOT NAMEDcoord: 21..214
score: 3.3