Cla97C10G188990 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G188990
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RNA polymerase II elongation factor ELL3 isoform 1
Location	Cla97Chr10 : 5066487 .. 5067143 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAACCACCCATTGAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGAGACGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAATGGAGTCTTTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAATGGTGGGTTGCGGCGGTGGCGATGGGGGCGACGTCAGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAAGAGTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTAA

mRNA sequence

ATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAACCACCCATTGAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGAGACGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAATGGAGTCTTTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAATGGTGGGTTGCGGCGGTGGCGATGGGGGCGACGTCAGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAAGAGTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTAA

Coding sequence (CDS)

ATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAACCACCCATTGAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGAGACGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAATGGAGTCTTTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAATGGTGGGTTGCGGCGGTGGCGATGGGGGCGACGTCAGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAAGAGTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTAA

Protein sequence

MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF

Homology

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BLAST of Cla97C10G188990 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 6.0e-105
Identity = 199/219 (90.87%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 1   MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHL 60
           MA+TKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHL
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATS 120
           FGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSSDP VC+KWWV AV +GATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 GVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180
           GVFVI+VQLKLW+YWKA GQLQREKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFI ISL  FSAIVFAASKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

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BLAST of Cla97C10G188990 vs. NCBI nr
Match: XP_004149573.1 (PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_3G061020 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 1.3e-104
Identity = 197/219 (89.95%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 1   MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHL 60
           MAETKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHL
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATS 120
           FGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSSDP VC+KWWV AV +GATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 GVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180
           GVFVI+VQLKLW+YWKA GQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFITISL  FSAI+F  SKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

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BLAST of Cla97C10G188990 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.3 bits (965), Expect = 6.9e-101
Identity = 188/216 (87.04%), Postives = 198/216 (91.67%), Query Frame = 0


Query: 3   ETKDSG-AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFG 62
           ET+DSG AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFG
Sbjct: 4   ETRDSGAAHVVEIPAE------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFG 63

Query: 63  LRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATSGV 122
           LR+GRRETKMESLKQQIFQLCCYFFLFHALSLTLL+TSSDPNVC KWWV  VAMGATSGV
Sbjct: 64  LRVGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGV 123

Query: 123 FVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 182
           FVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSV
Sbjct: 124 FVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSV 183

Query: 183 EIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCG 218
           EIKWGPLTW SRNF+TI L CFS IVF ASKFILCG
Sbjct: 184 EIKWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213

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BLAST of Cla97C10G188990 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 5.9e-100
Identity = 189/217 (87.10%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 3   ETKDSGA--HIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLF 62
           ETKDSGA  HIVEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLF
Sbjct: 4   ETKDSGAATHIVEIPAE------NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLF 63

Query: 63  GLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATSG 122
           GLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSSDPNVC KWWV  VAMGATSG
Sbjct: 64  GLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSG 123

Query: 123 VFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS 182
           VFVI+VQLKLWLYWKAS QLQREKSENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSS
Sbjct: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSS 183

Query: 183 VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCG 218
           VEIKWGPLTW SRNF+TI L CFS IVF ASKFILCG
Sbjct: 184 VEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

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BLAST of Cla97C10G188990 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 371.3 bits (952), Expect = 2.2e-99
Identity = 188/217 (86.64%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 3   ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLF 62
           ETKDSG  AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLF
Sbjct: 4   ETKDSGAAAHVVEIPAE------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLF 63

Query: 63  GLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATSG 122
           GLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSSDPNVC KWWV  VAMGATSG
Sbjct: 64  GLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSG 123

Query: 123 VFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS 182
           VFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSS
Sbjct: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSS 183

Query: 183 VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCG 218
           VEIKWGPLT  SRNF+TI L CFS IVF ASKFILCG
Sbjct: 184 VEIKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

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BLAST of Cla97C10G188990 vs. TrEMBL
Match: tr|A0A1S3BL81|A0A1S3BL81_CUCME (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 4.0e-105
Identity = 199/219 (90.87%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 1   MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHL 60
           MA+TKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHL
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATS 120
           FGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSSDP VC+KWWV AV +GATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 GVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180
           GVFVI+VQLKLW+YWKA GQLQREKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFI ISL  FSAIVFAASKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

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BLAST of Cla97C10G188990 vs. TrEMBL
Match: tr|A0A0A0L2U7|A0A0A0L2U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 8.9e-105
Identity = 197/219 (89.95%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 1   MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHL 60
           MAETKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHL
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATS 120
           FGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSSDP VC+KWWV AV +GATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 GVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180
           GVFVI+VQLKLW+YWKA GQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF 219
           SVEIKWGPLTWFSRNFITISL  FSAI+F  SKFILCGF
Sbjct: 181 SVEIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

[Close]

BLAST of Cla97C10G188990 vs. TrEMBL
Match: tr|A0A2P6QLA8|A0A2P6QLA8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.2e-70
Identity = 135/221 (61.09%), Postives = 173/221 (78.28%), Query Frame = 0


Query: 1   MAETKDSGAHIVEIPVEQENQTQNQNLM--ISVIQNHPLRQISESSGHLLLLKLWQRDEH 60
           MAE KD   H+VEIPV++E+Q +  + M  IS IQ+HPL +ISES GHLLLLKLW+R+E 
Sbjct: 1   MAEMKDCHHHVVEIPVDEEHQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRREED 60

Query: 61  LFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS---SDPNVCRKWWVAAVAM 120
           LFG RI RRET+M+ ++++IFQLCC+F +FHA  LT+L+TS   S+   C+KWW+ ++  
Sbjct: 61  LFGRRIARRETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSILS 120

Query: 121 GATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNR 180
            +TS VFV++VQ+ LW YWK  GQLQREK ENRAL RC+QELRMKG+ F+LSKEPQ G R
Sbjct: 121 VSTSVVFVVLVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSGKR 180

Query: 181 MKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILC 217
           +KSSSVEIKW P+TW S+N ITI L CF+ +VF ASK +LC
Sbjct: 181 LKSSSVEIKWKPITWCSQNLITICLVCFAGLVFPASKLMLC 221

[Close]

BLAST of Cla97C10G188990 vs. TrEMBL
Match: tr|M5WCP6|M5WCP6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G033100 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.0e-68
Identity = 133/223 (59.64%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 1   MAETKDSGAHIVEIPVEQENQTQNQNLM--ISVIQNHPLRQISESSGHLLLLKLWQRDEH 60
           MAE KD  AH+VEIPV++E+Q +  + M  IS IQ+HPL +ISES GHLLLLKLW+R+E 
Sbjct: 1   MAEMKD--AHVVEIPVDEEHQQKLSSAMTIISAIQHHPLMEISESPGHLLLLKLWRREED 60

Query: 61  LFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS---SDPNVCRKWWVAAVAM 120
           LFG RI R+E++M+S++++IFQLCC+F +FH   +T+L+TS   S+ ++C+KWW+ ++  
Sbjct: 61  LFGRRIARKESRMDSIRREIFQLCCFFLIFHGFFMTILFTSSVNSEEHICKKWWIPSILS 120

Query: 121 GATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNR 180
            +TS VFV +VQ+ L  YWK   QLQREK++NRALTRC+QELRMKG+ F+LSKEPQ G R
Sbjct: 121 VSTSFVFVFLVQVNLCRYWKVWNQLQREKTDNRALTRCIQELRMKGASFDLSKEPQSGKR 180

Query: 181 MKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF 219
           MKSSSVEIKW P+TW S+  ITI L CF+ +VF  SKF+LCGF
Sbjct: 181 MKSSSVEIKWKPVTWCSQYLITICLVCFAGLVFPVSKFMLCGF 221

[Close]

BLAST of Cla97C10G188990 vs. TrEMBL
Match: tr|B9T3X2|B9T3X2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0169980 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.9e-68
Identity = 133/221 (60.18%), Postives = 171/221 (77.38%), Query Frame = 0


Query: 1   MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLF 60
           MAE KD  AHIVEIPV +E+Q +   +M + +QNHPL +IS S GHLLLLKLWQR+E LF
Sbjct: 1   MAEMKD--AHIVEIPVNEEHQEKQLCVMTAALQNHPLTEISSSPGHLLLLKLWQREEDLF 60

Query: 61  GLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPN----VCRKWWVAAVAMG 120
             +IG +ET+M+S+K++IFQLC +F +FH + LT+L+TSS  N     C+KWW+ ++   
Sbjct: 61  NRKIGVKETRMDSIKREIFQLCSFFLIFHGIFLTILFTSSSDNKEEHTCKKWWIPSLVSI 120

Query: 121 ATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRM 180
           +TS VFV + Q+KL+ YWK   QLQRE+++NRALTRC+QELRMKGS F+LSKEPQ G RM
Sbjct: 121 STSLVFVSLAQVKLFRYWKVWKQLQRERNDNRALTRCIQELRMKGSSFDLSKEPQCGKRM 180

Query: 181 KSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCG 218
           KSSSVEIKW P+TW S+  +TI L CFS ++F ASKFILCG
Sbjct: 181 KSSSVEIKWKPITWCSQYLVTICLVCFSGLLFPASKFILCG 219

[Close]

BLAST of Cla97C10G188990 vs. TAIR10
Match: AT5G56120.1 (unknown protein)

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-62
Identity = 125/238 (52.52%), Postives = 164/238 (68.91%), Query Frame = 0


Query: 1   MAETKDSGAHIVEIPVEQENQTQNQNL-----------MISVIQNHPLRQISESSGHLLL 60
           MA TKDS  H+VEIPV++E++ +               ++ VIQ HPL +ISES GHLLL
Sbjct: 1   MAGTKDS--HVVEIPVDEEHKERQXXXQLVAVSNPGMGILKVIQQHPLSEISESPGHLLL 60

Query: 61  LKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPN------ 120
           LKLWQR+E LF  R+  +E+++ES+K++IFQLCC+F +FH    TL+Y+SS  +      
Sbjct: 61  LKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVK 120

Query: 121 ---VCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMK 180
              VC+KWW+ +    ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMK
Sbjct: 121 SNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMK 180

Query: 181 GSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF 219
           GS F+LSKEP  G RMKSSSVEIKW P+TWFS+  ITI L C + + F  SKFILCGF
Sbjct: 181 GSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

[Close]

BLAST of Cla97C10G188990 vs. TAIR10
Match: AT3G12870.1 (unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 56/190 (29.47%), Postives = 94/190 (49.47%), Query Frame = 0


Query: 35  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQL-------CCYFFL 94
           HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL             
Sbjct: 18  HPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIXXXXXXXXXXX 77

Query: 95  FHALSLTLLYTSSDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSEN 154
                             ++ W+ ++    +S   +  V+ K  +       L+REK + 
Sbjct: 78  XXXXXXXXXXXXXXXXXXKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKEDA 137

Query: 155 RALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAI 214
           + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+  F  S +
Sbjct: 138 KLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSCL 197

Query: 215 VFAASKFILC 217
           V A  + ILC
Sbjct: 198 VLAMIRLILC 205

The following BLAST results are available for this feature:

BLAST of Cla97C10G188990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449068.1	6.0e-105	90.87	PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P...	[more]
XP_004149573.1	1.3e-104	89.95	PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492....	[more]
XP_023553388.1	6.9e-101	87.04	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]
XP_022965180.1	5.9e-100	87.10	uncharacterized protein LOC111465114 [Cucurbita maxima]	[more]
XP_022932317.1	2.2e-99	86.64	uncharacterized protein LOC111438709 [Cucurbita moschata]	[more]

BLAST of Cla97C10G188990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL81\|A0A1S3BL81_CUCME	4.0e-105	90.87	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
tr\|A0A0A0L2U7\|A0A0A0L2U7_CUCSA	8.9e-105	89.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
tr\|A0A2P6QLA8\|A0A2P6QLA8_ROSCH	3.2e-70	61.09	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4...	[more]
tr\|M5WCP6\|M5WCP6_PRUPE	1.0e-68	59.64	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G033100 PE=4 SV=1	[more]
tr\|B9T3X2\|B9T3X2_RICCO	3.9e-68	60.18	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0169980 PE=4 SV=1	[more]

BLAST of Cla97C10G188990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G188990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56120.1	1.6e-62	52.52	unknown protein	[more]
AT3G12870.1	1.6e-14	29.47	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G188990.1	Cla97C10G188990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	PANTHER	PTHR33287	FAMILY NOT NAMED	coord: 4..217
None	No IPR available	PANTHER	PTHR33287:SF7	SUBFAMILY NOT NAMED	coord: 4..217

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G188990	Cla004488	Watermelon (97103) v1	wmwmbB057
Cla97C10G188990	Csa3G061020	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G188990	MELO3C014130	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G188990	ClCG10G004550	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G188990	CSPI03G04370	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G188990	Cucsa.042280	Cucumber (Gy14) v1	cgywmbB016
Cla97C10G188990	CmaCh16G009470	Cucurbita maxima (Rimu)	cmawmbB338
Cla97C10G188990	CmoCh16G009850	Cucurbita moschata (Rifu)	cmowmbB321
Cla97C10G188990	Lsi05G005190	Bottle gourd (USVL1VR-Ls)	lsiwmbB322
Cla97C10G188990	CsGy3G004410	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G188990	MELO3C014130.2	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G188990	Carg23555	Silver-seed gourd	carwmbB0007
Cla97C10G188990	Carg22344	Silver-seed gourd	carwmbB0613
Cla97C10G188990	CsaV3_3G004370	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G188990	Bhi11G000387	Wax gourd	wgowmbB003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G188990	Silver-seed gourd	carwmbB0357
Cla97C10G188990	Cucurbita maxima (Rimu)	cmawmbB566
Cla97C10G188990	Cucurbita maxima (Rimu)	cmawmbB843
Cla97C10G188990	Cucurbita maxima (Rimu)	cmawmbB845
Cla97C10G188990	Cucurbita moschata (Rifu)	cmowmbB819
Cla97C10G188990	Cucurbita moschata (Rifu)	cmowmbB824
Cla97C10G188990	Bottle gourd (USVL1VR-Ls)	lsiwmbB042
Cla97C10G188990	Watermelon (97103) v1	wmwmbB052