Carg23555 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23555
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA polymerase II elongation factor
Location	Cucurbita_argyrosperma_scaffold_376 : 200540 .. 201235 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAGCCAAAGATTCGGGTGCCCACATGGTCGAAATCCTAGACGAACAAGATAACCAAAATCGGTATCGAAACCTTATGATCTCTGTAATCCAAGAGCATCCATTGAGCCAAATTTAAGAAAGCTCAGGTCATCTATTGTTCTTAAAACTCTGGCAGCGAGACGAGCATTTGTTCGGCCTCCGAATCGGTCACCGAGAGACCAAATTGGAGTGTCTCAAGCAACAAATCTTCCAACTTTGCTGCTACTTCTTCCTCTTCAATGTCCTGTCTCTGACGCTGATGTTCACTTCATATAATCCCAATGTGTGTCACAAATGGTGGGGTCCAGCGGTGTCGGTGGCGGCGACGTCGGTCGTGTTTGTGATGGCGGTGCAGGTGAAATTGTGGGAGTATTGGAAGGCAGCAGGGGAGTTGCAGAGGGAGAGGATGAAGAACAGAGCAGTTATAAGATGTGTTCAAGAGTTGAGGATGAAGAGCTCAAGTGTGGAGATTAAATGGGGGCCTCTTACTTGCCTCTCAAGGAATTGCATTACTATTTCTCTTCTTTGCTTTTCAGGCCTTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTTAGTAAGGGAAATGCTCCGTTTTTGCATAATGATCGATGATCGTCGTATGTACGGCTTGGAGAGAGATCTTTTATGGGGTATTTCTGTTTAG

mRNA sequence

ATGGCCGAAGCCAAAGATTCGGGTGCCCACATGGTCGAAATCCTAGACGAACAAGATAACCAAAATCGGTATCGAAACCTTATGATCTCTCGAGACGAGCATTTGTTCGGCCTCCGAATCGGTCACCGAGAGACCAAATTGGAGTGTCTCAAGCAACAAATCTTCCAACTTTGCTGCTACTTCTTCCTCTTCAATGTCCTGTCTCTGACGCTGATGTTCACTTCATATAATCCCAATGTGTGTCACAAATGGTGGGGTCCAGCGGTGTCGGTGGCGGCGACGTCGGTCGTGTTTGTGATGGCGGTGCAGGTGAAATTGTGGGAGTATTGGAAGGCAGCAGGGGAGTTGCAGAGGGAGAGGATGAAGAACAGAGCAGTTATAAGATGTGTTCAAGAGTTGAGGATGAAGAGCTCAAGTGTGGAGATTAAATGGGGGCCTCTTACTTGCCTCTCAAGGAATTGCATTACTATTTCTCTTCTTTGCTTTTCAGGCCTTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTTAGTAAGGGAAATGCTCCGTTTTTGCATAATGATCGATGATCGTCGTATGTACGGCTTGGAGAGAGATCTTTTATGGGGTATTTCTGTTTAG

Coding sequence (CDS)

ATGGCCGAAGCCAAAGATTCGGGTGCCCACATGGTCGAAATCCTAGACGAACAAGATAACCAAAATCGGTATCGAAACCTTATGATCTCTCGAGACGAGCATTTGTTCGGCCTCCGAATCGGTCACCGAGAGACCAAATTGGAGTGTCTCAAGCAACAAATCTTCCAACTTTGCTGCTACTTCTTCCTCTTCAATGTCCTGTCTCTGACGCTGATGTTCACTTCATATAATCCCAATGTGTGTCACAAATGGTGGGGTCCAGCGGTGTCGGTGGCGGCGACGTCGGTCGTGTTTGTGATGGCGGTGCAGGTGAAATTGTGGGAGTATTGGAAGGCAGCAGGGGAGTTGCAGAGGGAGAGGATGAAGAACAGAGCAGTTATAAGATGTGTTCAAGAGTTGAGGATGAAGAGCTCAAGTGTGGAGATTAAATGGGGGCCTCTTACTTGCCTCTCAAGGAATTGCATTACTATTTCTCTTCTTTGCTTTTCAGGCCTTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTTAGTAAGGGAAATGCTCCGTTTTTGCATAATGATCGATGATCGTCGTATGTACGGCTTGGAGAGAGATCTTTTATGGGGTATTTCTGTTTAG

Protein sequence

MAEAKDSGAHMVEILDEQDNQNRYRNLMISRDEHLFGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSVVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQELRMKSSSVEIKWGPLTCLSRNCITISLLCFSGLVFAASKFILCGFLVREMLRFCIMIDDRRMYGLERDLLWGISV

Homology

[Close]

BLAST of Carg23555 vs. NCBI nr
Match: XP_023539504.1 (uncharacterized protein LOC111800147 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 8.6e-77
Identity = 159/205 (77.56%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 1   MAEAKDSGAHMVEILDEQDNQNRYRNLMIS------------------------RDEHLF 60
           MAEAKDSGA++VEILDEQDNQNR +NLMIS                        RDEHLF
Sbjct: 1   MAEAKDSGAYVVEILDEQDNQNRNQNLMISVIQEHPLSQISESSGHLLLLKLWQRDEHLF 60

Query: 61  GLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSV 120
           GLRIG RETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSV
Sbjct: 61  GLRIGQRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSV 120

Query: 121 VFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQE----LRMKSSSVEIKWGPLTCLSR 178
           VFVMAVQVKLW YWKAAGELQRERMK      C +      RMKSSSVEIKW PLTCLSR
Sbjct: 121 VFVMAVQVKLWGYWKAAGELQRERMKGCCFNLCKEPQSVGKRMKSSSVEIKWRPLTCLSR 180

[Close]

BLAST of Carg23555 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 231.1 bits (588), Expect = 3.4e-57
Identity = 129/211 (61.14%), Postives = 147/211 (69.67%), Query Frame = 0


Query: 3   EAKDSG--AHMVEILDEQDN-------QNRYRNLMIS-----------RDEHLFGLRIGH 62
           E KDSG  AH+VEI  E  N       Q+  R +  S           R+EHLFGLRIG 
Sbjct: 4   ETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGR 63

Query: 63  RETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSVVFVMAV 122
           RETKLE LKQQIFQLCCYFFLF+ LSLTL+FTS +PNVCHKWW P V++ ATS VFV+ V
Sbjct: 64  RETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVV 123

Query: 123 QVKLWEYWKAAGELQRERMKNRAVIRCVQEL-----------------RMKSSSVEIKWG 177
           Q+KLW YWKA+ +LQRE+ +NRA+ RCVQEL                 RMKSSSVEIKWG
Sbjct: 124 QLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWG 183

[Close]

BLAST of Carg23555 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 126/210 (60.00%), Postives = 147/210 (70.00%), Query Frame = 0


Query: 3   EAKDSG-AHMVEILDEQDN-------QNRYRNLMIS-----------RDEHLFGLRIGHR 62
           E +DSG AH+VEI  E  N       Q+  R +  S           R+EHLFGLR+G R
Sbjct: 4   ETRDSGAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRVGRR 63

Query: 63  ETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSVVFVMAVQ 122
           ETK+E LKQQIFQLCCYFFLF+ LSLTL+FTS +PNVCHKWW P V++ ATS VFV+ VQ
Sbjct: 64  ETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQ 123

Query: 123 VKLWEYWKAAGELQRERMKNRAVIRCVQEL-----------------RMKSSSVEIKWGP 177
           +KLW YWKA+ +LQRE+ +NRA+ RCVQEL                 RMKSSSVEIKWGP
Sbjct: 124 LKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGP 183

[Close]

BLAST of Carg23555 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 6.4e-56
Identity = 128/211 (60.66%), Postives = 146/211 (69.19%), Query Frame = 0


Query: 3   EAKDSGA--HMVEILDEQDN-------QNRYRNLMIS-----------RDEHLFGLRIGH 62
           E KDSGA  H+VEI  E  N       Q+  R +  S           R+EHLFGLRIG 
Sbjct: 4   ETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGR 63

Query: 63  RETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATSVVFVMAV 122
           RETKLE LKQQIFQLCCYFFLF+ LSLTL+FTS +PNVCHKWW P V++ ATS VFV+ V
Sbjct: 64  RETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVV 123

Query: 123 QVKLWEYWKAAGELQRERMKNRAVIRCVQEL-----------------RMKSSSVEIKWG 177
           Q+KLW YWKA+ +LQRE+ +NRA+ R VQEL                 RMKSSSVEIKWG
Sbjct: 124 QLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWG 183

[Close]

BLAST of Carg23555 vs. NCBI nr
Match: XP_004149573.1 (PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_3G061020 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 3.2e-55
Identity = 128/219 (58.45%), Postives = 147/219 (67.12%), Query Frame = 0


Query: 1   MAEAKDS-GAHMVEILDEQDNQNRYRNLMIS------------------------RDEHL 60
           MAE KDS  AH+VEI  EQ+N    +NLMIS                        RDEHL
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATS 120
           FGLRIG RETK+E LKQQIFQLCC+FFLF+ LSLTL++TS +P VC KWW PAV + ATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 VVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQEL-----------------RMKSS 178
            VFV+ VQ+KLW YWKA G+LQ+E+ +NRA+ RCVQEL                 RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

[Close]

BLAST of Carg23555 vs. TAIR10
Match: AT5G56120.1 (unknown protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-31
Identity = 78/173 (45.09%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 31  RDEHLFGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTS---------YNPNVC 90
           R+E LF  R+  +E++LE +K++IFQLCC+F +F+    TL+++S          +  VC
Sbjct: 64  REEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVKSNAVC 123

Query: 91  HKWWGPAVSVAATSVVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQEL-------- 150
            KWW P+    ATS+V V  VQ KL+ +WK    + RER  NR + RCV EL        
Sbjct: 124 KKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMKGSSFD 183

Query: 151 ---------RMKSSSVEIKWGPLTCLSRNCITISLLCFSGLVFAASKFILCGF 178
                    RMKSSSVEIKW P+T  S+  ITI LLC +GL F  SKFILCGF
Sbjct: 184 LSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

[Close]

BLAST of Carg23555 vs. TrEMBL
Match: tr|A0A1S3BL81|A0A1S3BL81_CUCME (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 129/219 (58.90%), Postives = 147/219 (67.12%), Query Frame = 0


Query: 1   MAEAKDS-GAHMVEILDEQDNQNRYRNLMIS------------------------RDEHL 60
           MA+ KDS  AH+VEI  EQ+N    +NLMIS                        RDEHL
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATS 120
           FGLRIG RETK+E LKQQIFQLCC+FFLF+ LSLTL++TS +P VC KWW PAV + ATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 VVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQEL-----------------RMKSS 178
            VFV+ VQ+KLW YWKA G+LQRE+ +NRA+ RC QEL                 RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS 180

[Close]

BLAST of Carg23555 vs. TrEMBL
Match: tr|A0A0A0L2U7|A0A0A0L2U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 128/219 (58.45%), Postives = 147/219 (67.12%), Query Frame = 0


Query: 1   MAEAKDS-GAHMVEILDEQDNQNRYRNLMIS------------------------RDEHL 60
           MAE KDS  AH+VEI  EQ+N    +NLMIS                        RDEHL
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHT--QNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSYNPNVCHKWWGPAVSVAATS 120
           FGLRIG RETK+E LKQQIFQLCC+FFLF+ LSLTL++TS +P VC KWW PAV + ATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATS 120

Query: 121 VVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQEL-----------------RMKSS 178
            VFV+ VQ+KLW YWKA G+LQ+E+ +NRA+ RCVQEL                 RMKSS
Sbjct: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

[Close]

BLAST of Carg23555 vs. TrEMBL
Match: tr|A0A2P6QLA8|A0A2P6QLA8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.3e-40
Identity = 96/221 (43.44%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 1   MAEAKDSGAHMVEILDEQDNQNRYRNLMI--------------------------SRDEH 60
           MAE KD   H+VEI  ++++Q +  + M                            R+E 
Sbjct: 1   MAEMKDCHHHVVEIPVDEEHQQKLSSSMTIISAIQHHPLMEISESPGHLLLLKLWRREED 60

Query: 61  LFGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTS---YNPNVCHKWWGPAVSV 120
           LFG RI  RET+++ ++++IFQLCC+F +F+   LT++FTS        C KWW P++  
Sbjct: 61  LFGRRIARRETRMDLIRREIFQLCCFFLIFHAFFLTILFTSSVNSEKGSCQKWWIPSILS 120

Query: 121 AATSVVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQELRM---------------- 176
            +TSVVFV+ VQV LW YWK  G+LQRE+++NRA++RC+QELRM                
Sbjct: 121 VSTSVVFVVLVQVNLWRYWKVWGQLQREKIENRALVRCIQELRMKGASFDLSKEPQSGKR 180

[Close]

BLAST of Carg23555 vs. TrEMBL
Match: tr|A0A0L9VC56|A0A0L9VC56_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g114600 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.2e-38
Identity = 99/234 (42.31%), Postives = 134/234 (57.26%), Query Frame = 0


Query: 1   MAEAKDSGAHMVEILDEQDNQNRYRNLMIS------------------------------ 60
           M E KD+  H+VEI  EQ++    +N++ S                              
Sbjct: 1   MGETKDT--HVVEIPVEQEHHLHPKNVLCSMTSNMIEAIEDHPLTEISESPGHLLLLKLW 60

Query: 61  -RDEHLFGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSY----------NPN 120
            R+E LF  RI H+ET+++ +K ++FQL  +FF+F+   LTL+FTS+          + +
Sbjct: 61  QREEELFAKRIAHKETRMDTIKAELFQLSSFFFIFHGFFLTLLFTSWARAQKEAQQAHHS 120

Query: 121 VCHKWWGPAVSVAATSVVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQEL------ 177
           VCHKWW P++    TS+VFV+ VQVK+  YWK  G+LQRER   RAV RC+QEL      
Sbjct: 121 VCHKWWLPSMLSLCTSLVFVVLVQVKVHRYWKVWGQLQRERSDGRAVTRCIQELRMKGAS 180

[Close]

BLAST of Carg23555 vs. TrEMBL
Match: tr|A0A0S3S6E5|A0A0S3S6E5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G191200 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.2e-38
Identity = 99/234 (42.31%), Postives = 134/234 (57.26%), Query Frame = 0


Query: 1   MAEAKDSGAHMVEILDEQDNQNRYRNLMIS------------------------------ 60
           M E KD+  H+VEI  EQ++    +N++ S                              
Sbjct: 1   MGETKDT--HVVEIPVEQEHHLHPKNVLCSMTSNMIEAIEDHPLTEISESPGHLLLLKLW 60

Query: 61  -RDEHLFGLRIGHRETKLECLKQQIFQLCCYFFLFNVLSLTLMFTSY----------NPN 120
            R+E LF  RI H+ET+++ +K ++FQL  +FF+F+   LTL+FTS+          + +
Sbjct: 61  QREEELFAKRIAHKETRMDTIKAELFQLSSFFFIFHGFFLTLLFTSWARAQKEAQQAHHS 120

Query: 121 VCHKWWGPAVSVAATSVVFVMAVQVKLWEYWKAAGELQRERMKNRAVIRCVQEL------ 177
           VCHKWW P++    TS+VFV+ VQVK+  YWK  G+LQRER   RAV RC+QEL      
Sbjct: 121 VCHKWWLPSMLSLCTSLVFVVLVQVKVHRYWKVWGQLQRERSDGRAVTRCIQELRMKGAS 180

The following BLAST results are available for this feature:

BLAST of Carg23555 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539504.1	8.6e-77	77.56	uncharacterized protein LOC111800147 [Cucurbita pepo subsp. pepo]	[more]
XP_022932317.1	3.4e-57	61.14	uncharacterized protein LOC111438709 [Cucurbita moschata]	[more]
XP_023553388.1	1.7e-56	60.00	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]
XP_022965180.1	6.4e-56	60.66	uncharacterized protein LOC111465114 [Cucurbita maxima]	[more]
XP_004149573.1	3.2e-55	58.45	PREDICTED: uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492....	[more]

BLAST of Carg23555 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56120.1	1.8e-31	45.09	unknown protein	[more]

BLAST of Carg23555 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23555 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL81\|A0A1S3BL81_CUCME	2.1e-55	58.90	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
tr\|A0A0A0L2U7\|A0A0A0L2U7_CUCSA	2.1e-55	58.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
tr\|A0A2P6QLA8\|A0A2P6QLA8_ROSCH	3.3e-40	43.44	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0074881 PE=4...	[more]
tr\|A0A0L9VC56\|A0A0L9VC56_PHAAN	5.2e-38	42.31	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g114600 PE...	[more]
tr\|A0A0S3S6E5\|A0A0S3S6E5_PHAAN	5.2e-38	42.31	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23555-RA	Carg23555-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33287	FAMILY NOT NAMED	coord: 30..176
None	No IPR available	PANTHER	PTHR33287:SF7	SUBFAMILY NOT NAMED	coord: 30..176

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23555	Cla004488	Watermelon (97103) v1	carwmB0010
Carg23555	Csa3G061020	Cucumber (Chinese Long) v2	carcuB0008
Carg23555	MELO3C014130	Melon (DHL92) v3.5.1	carmeB0006
Carg23555	ClCG10G004550	Watermelon (Charleston Gray)	carwcgB0008
Carg23555	CSPI03G04370	Wild cucumber (PI 183967)	carcpiB0008
Carg23555	Cucsa.042280	Cucumber (Gy14) v1	carcgyB0007
Carg23555	CmaCh16G009470	Cucurbita maxima (Rimu)	carcmaB0012
Carg23555	CmoCh16G009850	Cucurbita moschata (Rifu)	carcmoB0012
Carg23555	Lsi05G005190	Bottle gourd (USVL1VR-Ls)	carlsiB007
Carg23555	Cp4.1LG14g07650	Cucurbita pepo (Zucchini)	carcpeB0010
Carg23555	Cp4.1LG08g08600	Cucurbita pepo (Zucchini)	carcpeB0011
Carg23555	CsGy3G004410	Cucumber (Gy14) v2	carcgybB0007
Carg23555	MELO3C014130.2	Melon (DHL92) v3.6.1	carmedB0007
Carg23555	CsaV3_3G004370	Cucumber (Chinese Long) v3	carcucB0008
Carg23555	Cla97C10G188990	Watermelon (97103) v2	carwmbB0007
Carg23555	Bhi11G000387	Wax gourd	carwgoB0009

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23555	Carg22344	Silver-seed gourd	carcarB006

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23555	Cucurbita maxima (Rimu)	carcmaB0013
Carg23555	Cucurbita moschata (Rifu)	carcmoB0013