CsaV3_2G035500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G035500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 23773398 .. 23774580 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTGAACACCAACCCCCCATTTTTCTCTCTTCCTCTCTAGTAGCTCCAATTTGAGATGCCGTTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTTTACTCTTTTTTTCAATAACATACTTAAAAACATTTACAATCAAACCCCACCATAATAACCACAATAACAACAACATCAACTACAACATTATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCACCACCACCTCCAACCTTTTAGTCCACGGGAGAGCACTCCAGCCCGATGCCACGGTGGAGATCGGATCCCATGCCCATGAATTCAAGTTGAAACCAAAGGATGATGATGGTGGTGGTGACAGTGGTGGTGGTGGTTCGGACACATCGAATCAACGAGTATTTACGTTGGCATCAGGACCGAGCAGGAGGGGAGACGGGCACAAGTGAAAATTGGAAAAAGCTTGGAGTTATTGGATGGCGTTTGTTATTGTTGGGTTTGATGCATGTGTTTTAATTGTTTTACTCTGCGGTTGTAATCTGTAAGAAAGAGTACTAAGCTTTTCATAGATTGTACAAAAATTCTTTTCACAGATCATAAGTTACTGTCATCATATATTGTCTTGATATGTCATCTTAGATTGAGTTTGTTAGTCATTTCCAGTATTTGGATTTTAAATGAGCCTATTGCTCTGTTTTTTTCCCTCCTTTTTAAAGTGGAGCTATGGATGATCCCCTTTTGGGAAGTTTTTAGGCCTCAATCTTCCTACCCAATCTCAAATTGATCAAGAAATTGGGGGTGAGTTTGGAATTTTCAAGATCAAAATTTTCACTGCTTTTTTACTTTTATTTACATTCCATAATTGTGAGGGGGCATTAGTGGTTTGTTAAAATTAAGCCCATAGCCTATTTAGACTATATATTTTATGCTTTGACAAAAACAACAGAATTCTTAAACCCAGTCCAATTTAAATACATGGGTAATCAAAATACTTCTTACAGTTAAAAGAAATATGTGATTGCACATCATTGTCCACTAATTAATTATTATCTCATTGTCATCTCAGTACCATATAATTACCATATGATTGTCCATCATACCGATTCCTATTTGATTGTTGTCGAATTATTGGCCGATCCTTATCTAATTTGCTAATTATGTTGTTTGATG

mRNA sequence

ATGCCGTTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTTTACTCTTTTTTTCAATAACATACTTAAAAACATTTACAATCAAACCCCACCATAATAACCACAATAACAACAACATCAACTACAACATTATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCACCACCACCTCCAACCTTTTAGTCCACGGGAGAGCACTCCAGCCCGATGCCACGGTGGAGATCGGATCCCATGCCCATGAATTCAAGTTGAAACCAAAGGATGATGATGGTGGTGGTGACAGTGGTGGTGGTGGTTCGGACACATCGAATCAACGAGTATTTACGTTGGCATCAGGACCGAGCAGGAGGGGAGACGGGCACAAGTGA

Coding sequence (CDS)

ATGCCGTTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTTTACTCTTTTTTTCAATAACATACTTAAAAACATTTACAATCAAACCCCACCATAATAACCACAATAACAACAACATCAACTACAACATTATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCACCACCACCTCCAACCTTTTAGTCCACGGGAGAGCACTCCAGCCCGATGCCACGGTGGAGATCGGATCCCATGCCCATGAATTCAAGTTGAAACCAAAGGATGATGATGGTGGTGGTGACAGTGGTGGTGGTGGTTCGGACACATCGAATCAACGAGTATTTACGTTGGCATCAGGACCGAGCAGGAGGGGAGACGGGCACAAGTGA

Protein sequence

MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHNNHNNNNINYNIMRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGGGGSDTSNQRVFTLASGPSRRGDGHK

Homology

[Close]

BLAST of CsaV3_2G035500 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHXXXXXXXXXXXXXXXXXXXXXXX 60
           MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVF 120
           XXXXXXXTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVF
Sbjct: 61  XXXXXXXTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVF 120

Query: 121 TLASGPSRRGDGHK 135
           TLASGPSRRGDGHK
Sbjct: 121 TLASGPSRRGDGHK 134

[Close]

BLAST of CsaV3_2G035500 vs. TrEMBL
Match: tr|A0A0A0LNA9|A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHXXXXXXXXXXXXXXXXXXXXXXX 60
           MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MPFQDTIFSAPFFLFSQNLLLFFSITYLKTFTIKPHHXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVF 120
           XXXXXXXTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVF
Sbjct: 61  XXXXXXXTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVF 120

Query: 121 TLASGPSRRGDGHK 135
           TLASGPSRRGDGHK
Sbjct: 121 TLASGPSRRGDGHK 134

The following BLAST results are available for this feature:

BLAST of CsaV3_2G035500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63303.1	2.2e-36	100.00	hypothetical protein Csa_2G425800 [Cucumis sativus]	[more]

BLAST of CsaV3_2G035500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNA9\|A0A0A0LNA9_CUCSA	1.4e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G035500.1	CsaV3_2G035500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G035500	CSPI02G26970	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G035500	CmaCh20G009730	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G035500	CmoCh20G009830	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G035500	Cp4.1LG16g01480	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G035500	CsGy2G026400	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G035500	Cla006752	Watermelon (97103) v1	cucwmB156
CsaV3_2G035500	ClCG02G008180	Watermelon (Charleston Gray)	cucwcgB138
CsaV3_2G035500	Lsi10G001780	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G035500	Cla97C02G034820	Watermelon (97103) v2	cucwmbB125
CsaV3_2G035500	Bhi10G001181	Wax gourd	cucwgoB191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G035500	Cucumber (Chinese Long) v3	cuccucB096
CsaV3_2G035500	Silver-seed gourd	carcucB0444
CsaV3_2G035500	Silver-seed gourd	carcucB0997
CsaV3_2G035500	Cucumber (Gy14) v1	cgycucB069
CsaV3_2G035500	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G035500	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G035500	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G035500	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G035500	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G035500	Wax gourd	cucwgoB180