Cla97C02G034820 (gene) Watermelon (97103) v2

Overview
NameCla97C02G034820
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 9804121 .. 9804369 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCCACGGGAGAGCACTCCGGCCCGACGCCACAGCCGAGATCGGGCAGCGGGATGGGTCCGATTCCCATGAATTCAAATTGAAACCAAAGGATAGTAGTGGTGGTGATGATGGTGGTGGTGGTTCCAACGCTGAGTCGAATCAGCGAGTGTTTACGTTGGCGTCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCCACGGGAGAGCACTCCGGCCCGACGCCACAGCCGAGATCGGGCAGCGGGATGGGTCCGATTCCCATGAATTCAAATTGAAACCAAAGGATAGTAGTGGTGGTGATGATGGTGGTGGTGGTTCCAACGCTGAGTCGAATCAGCGAGTGTTTACGTTGGCGTCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCCACGGGAGAGCACTCCGGCCCGACGCCACAGCCGAGATCGGGCAGCGGGATGGGTCCGATTCCCATGAATTCAAATTGAAACCAAAGGATAGTAGTGGTGGTGATGATGGTGGTGGTGGTTCCAACGCTGAGTCGAATCAGCGAGTGTTTACGTTGGCGTCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLLSLLLLPLLLPAHGRALRPDATAEIGQRDGSDSHEFKLKPKDSSGGDDGGGGSNAESNQRVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of Cla97C02G034820 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  LPAHGRALRPDATAEIGQRDGSDSHEFKLKPKDSXXXXXXXXXXXAESNQRVFTLASGPS 75
           L  HGRAL+PDAT EI    GS +HEFKLKPK  XXXXXXXXXXX    QRVFTLASGPS
Sbjct: 72  LLVHGRALQPDATVEI----GSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVFTLASGPS 131

Query: 76  RRGDGHK 83
           RRGDGHK
Sbjct: 132 RRGDGHK 134

[Close]
BLAST of Cla97C02G034820 vs. TrEMBL
Match: tr|A0A0A0LNA9|A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  LPAHGRALRPDATAEIGQRDGSDSHEFKLKPKDSXXXXXXXXXXXAESNQRVFTLASGPS 75
           L  HGRAL+PDAT EI    GS +HEFKLKPK  XXXXXXXXXXX    QRVFTLASGPS
Sbjct: 72  LLVHGRALQPDATVEI----GSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVFTLASGPS 131

Query: 76  RRGDGHK 83
           RRGDGHK
Sbjct: 132 RRGDGHK 134

The following BLAST results are available for this feature:
BLAST of Cla97C02G034820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63303.14.7e-1076.12hypothetical protein Csa_2G425800 [Cucumis sativus][more]
BLAST of Cla97C02G034820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNA9|A0A0A0LNA9_CUCSA3.1e-1076.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of Cla97C02G034820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G034820 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G034820.1Cla97C02G034820.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G034820Cla006752Watermelon (97103) v1wmwmbB326
Cla97C02G034820Csa2G425800Cucumber (Chinese Long) v2cuwmbB119
Cla97C02G034820ClCG02G008180Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G034820CSPI02G26970Wild cucumber (PI 183967)cpiwmbB121
Cla97C02G034820Lsi10G001780Bottle gourd (USVL1VR-Ls)lsiwmbB054
Cla97C02G034820CsaV3_2G035500Cucumber (Chinese Long) v3cucwmbB125
Cla97C02G034820Bhi10G001181Wax gourdwgowmbB362
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G034820Silver-seed gourdcarwmbB0436
Cla97C02G034820Silver-seed gourdcarwmbB1004
Cla97C02G034820Cucumber (Gy14) v2cgybwmbB116
Cla97C02G034820Cucumber (Gy14) v1cgywmbB068
Cla97C02G034820Cucurbita maxima (Rimu)cmawmbB571
Cla97C02G034820Cucurbita maxima (Rimu)cmawmbB617
Cla97C02G034820Cucurbita moschata (Rifu)cmowmbB547
Cla97C02G034820Cucurbita moschata (Rifu)cmowmbB591
Cla97C02G034820Melon (DHL92) v3.6.1medwmbB087
Cla97C02G034820Melon (DHL92) v3.5.1mewmbB092
Cla97C02G034820Wax gourdwgowmbB370