ClCG02G008180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G008180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 10388259 .. 10388507 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCCACGGGAGAGCACTCCGGCCCGACGCCACAGCCGAGATCGGGCAGCGGGATGGGTCCGATTCCCATGAATTCAAATTGAAACCAAAGGATAGTAGTGGTGGTGATGATGGTGGTGGTGGTTCCAACGCTGAGTCGAATCAGCGAGTGTTTACGTTGGCGTCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCCACGGGAGAGCACTCCGGCCCGACGCCACAGCCGAGATCGGGCAGCGGGATGGGTCCGATTCCCATGAATTCAAATTGAAACCAAAGGATAGTAGTGGTGGTGATGATGGTGGTGGTGGTTCCAACGCTGAGTCGAATCAGCGAGTGTTTACGTTGGCGTCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCTTTGCCTCCTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCCACGGGAGAGCACTCCGGCCCGACGCCACAGCCGAGATCGGGCAGCGGGATGGGTCCGATTCCCATGAATTCAAATTGAAACCAAAGGATAGTAGTGGTGGTGATGATGGTGGTGGTGGTTCCAACGCTGAGTCGAATCAGCGAGTGTTTACGTTGGCGTCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLLSLLLLPLLLPAHGRALRPDATAEIGQRDGSDSHEFKLKPKDSSGGDDGGGGSNAESNQRVFTLASGPSRRGDGHK

Homology

[Close]

BLAST of ClCG02G008180 vs. TrEMBL
Match: A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-26
Identity = 65/89 (73.03%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 1   MRHLCLLSLLLLPLLLPA-------HGRALRPDATAEIGQRDGSDSHEFKLKPKDSSGGD 60
           MRHLCLLSLLLLPLLLP        HGRAL+PDAT EIG    S +HEFKLKPKD  GG 
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIG----SHAHEFKLKPKDDDGGG 109

Query: 61  DGGGGSNAESNQRVFTLASGPSRRGDGHK 83
           D GGG +  SNQRVFTLASGPSRRGDGHK
Sbjct: 110 DSGGGGSDTSNQRVFTLASGPSRRGDGHK 134

[Close]

BLAST of ClCG02G008180 vs. NCBI nr
Match: gi|700208184|gb|KGN63303.1| (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 65/89 (73.03%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 1   MRHLCLLSLLLLPLLLPA-------HGRALRPDATAEIGQRDGSDSHEFKLKPKDSSGGD 60
           MRHLCLLSLLLLPLLLP        HGRAL+PDAT EIG    S +HEFKLKPKD  GG 
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIG----SHAHEFKLKPKDDDGGG 109

Query: 61  DGGGGSNAESNQRVFTLASGPSRRGDGHK 83
           D GGG +  SNQRVFTLASGPSRRGDGHK
Sbjct: 110 DSGGGGSDTSNQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:

BLAST of ClCG02G008180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA9_CUCSA	8.3e-26	73.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1	[more]

BLAST of ClCG02G008180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208184\|gb\|KGN63303.1\|	1.2e-25	73.03	hypothetical protein Csa_2G425800 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G008180.1	ClCG02G008180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G008180	Csa2G425800	Cucumber (Chinese Long) v2	cuwcgB123
ClCG02G008180	Cla006752	Watermelon (97103) v1	wcgwmB208
ClCG02G008180	Cla97C02G034820	Watermelon (97103) v2	wcgwmbB138
ClCG02G008180	Bhi10G001181	Wax gourd	wcgwgoB294
ClCG02G008180	CSPI02G26970	Wild cucumber (PI 183967)	cpiwcgB129
ClCG02G008180	Lsi10G001780	Bottle gourd (USVL1VR-Ls)	lsiwcgB055
ClCG02G008180	CsaV3_2G035500	Cucumber (Chinese Long) v3	cucwcgB138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G008180	Cucumber (Gy14) v2	cgybwcgB120
ClCG02G008180	Melon (DHL92) v3.6.1	medwcgB088
ClCG02G008180	Silver-seed gourd	carwcgB0406
ClCG02G008180	Silver-seed gourd	carwcgB0930
ClCG02G008180	Wax gourd	wcgwgoB299
ClCG02G008180	Cucumber (Gy14) v1	cgywcgB071
ClCG02G008180	Cucurbita maxima (Rimu)	cmawcgB484
ClCG02G008180	Cucurbita maxima (Rimu)	cmawcgB530
ClCG02G008180	Cucurbita moschata (Rifu)	cmowcgB481
ClCG02G008180	Cucurbita moschata (Rifu)	cmowcgB528
ClCG02G008180	Melon (DHL92) v3.5.1	mewcgB090
ClCG02G008180	Cucurbita pepo (Zucchini)	cpewcgB270
ClCG02G008180	Cucurbita pepo (Zucchini)	cpewcgB663