Bhi10G001181 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10G001181
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr10 : 36552933 .. 36554242 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCAACCCCCCCTTTTCCCCTTCCTCCCCAGTAGCTCAATTTGAGATGCCATTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTGTAATCTTTTTTTTCTTTTTTTTTAATAACAACACACTTAAAAACATTTACAAACAAACCCCATCACAATAACAACATCAACAACAACATTATGAGGCATCTTTGCCTCTTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCACCACTAACCTTTTAGTTCACGGGCGAGTGCCCCGGCCCGATGCCACGGCCGAGATTGGGCAGCAGGATGGGTCCGATGCTCGTGAATTCAAATTGAAACCAAAGGATGGCGGTGGTGGTGATGGTGGTGGTTCGGACACGTCGAATCAGCGAGTGTTTACATTGGCGTCAGGACCGAGCAGGAGGGGAGATGGGCACAAGTGAAAGTTGGGAAACGTTTGGAGTTGTTGGATACCGTTTGTCGTTGGTTTGGTCCTTTAATTGTTTTATTATGCGGTTGTAATCTGTAAGAAAGAGTACGCTTTTTATAGATTGTACAAAAATTCTTTTCACAGATTATAAGTTACTGTCATGGTATGGTCTTAATATGTCATCCTAGATCGAGTTTGTTCGTCATTTCCAGCATTTGGATTTTATATGAGCCTATTGCTCTGTTTTTTTTTTTTTTTTTCTCTTTTAAAATTTTACATTTCTACACTTTAATAATTAGGAAAGTGGAGCTATGGATGATTTATGCTCTAAGGGAAATTCTAAGCCTCAATCTTCCAAATTTATTCAAGGAATTGGGGTGAGTTTGGAAATTCGAAGATCAAAATTTTTTTCATTGCTTTTTTACTTTTACTTGATTTTTTTTAATTAAACGTTAGATAATTATAAGGGACATATAGGTCTGGATAATTTAGCCTGTAGCTTACACTTTTTGTGTTTGCAAAAATGCCAAGACTTCAAGCCCAACCCATGGATATCAAAGGAAAATGTCCCAAATGCCCTTGCTGTTCAGTTTCCTAATTCTTAGGGTTAAAAGGTCAGTTGCAACATTAGCCAAACCCGCCTTTACATTGCATTTTATAGCAGCTCTTTTTAACCTTTGCAGATACAGCAAAAATTTGGTCCAGCCCAAAAATTAAAAACGTAAAAGTCCAAAATACCCTCATTAAAAACAAGCCAAAAAAAAAAAAAAAGGAGATTGTCATCTTCTATACTTCTTATATACTATACATGAAAATGATTGATTACTATCTGATTTACTATTGATATACTTTAAATACAAATAAAAGCAAT

mRNA sequence

CACCAACCCCCCCTTTTCCCCTTCCTCCCCAGTAGCTCAATTTGAGATGCCATTTCAAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTGTAATCTTTTTTTTCTTTTTTTTTAATAACAACACACTTAAAAACATTTACAAACAAACCCCATCACAATAACAACATCAACAACAACATTATGAGGCATCTTTGCCTCTTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCACCACTAACCTTTTAGTTCACGGGCGAGTGCCCCGGCCCGATGCCACGGCCGAGATTGGGCAGCAGGATGGGTCCGATGCTCGTGAATTCAAATTGAAACCAAAGGATGGCGGTGGTGGTGATGGTGGTGGTTCGGACACGTCGAATCAGCGAGTGTTTACATTGGCGTCAGGACCGAGCAGGAGGGGAGATGGGCACAAGTGAAAGTTGGGAAACGTTTGGAGTTGTTGGATACCGTTTGTCGTTGGTTTGGTCCTTTAATTGTTTTATTATGCGGTTGTAATCTGTAAGAAAGAGTACGCTTTTTATAGATTGTACAAAAATTCTTTTCACAGATTATAAGTTACTGTCATGGTATGGTCTTAATATGTCATCCTAGATCGAGTTTGTTCGTCATTTCCAGCATTTGGATTTTATATGAGCCTATTGCTCTGTTTTTTTTTTTTTTTTTCTCTTTTAAAATTTTACATTTCTACACTTTAATAATTAGGAAAGTGGAGCTATGGATGATTTATGCTCTAAGGGAAATTCTAAGCCTCAATCTTCCAAATTTATTCAAGGAATTGGGGTGAGTTTGGAAATTCGAAGATCAAAATTTTTTTCATTGCTTTTTTACTTTTACTTGATTTTTTTTAATTAAACGTTAGATAATTATAAGGGACATATAGGTCTGGATAATTTAGCCTGTAGCTTACACTTTTTGTGTTTGCAAAAATGCCAAGACTTCAAGCCCAACCCATGGATATCAAAGGAAAATGTCCCAAATGCCCTTGCTGTTCAGTTTCCTAATTCTTAGGGTTAAAAGGTCAGTTGCAACATTAGCCAAACCCGCCTTTACATTGCATTTTATAGCAGCTCTTTTTAACCTTTGCAGATACAGCAAAAATTTGGTCCAGCCCAAAAATTAAAAACGTAAAAGTCCAAAATACCCTCATTAAAAACAAGCCAAAAAAAAAAAAAAAGGAGATTGTCATCTTCTATACTTCTTATATACTATACATGAAAATGATTGATTACTATCTGATTTACTATTGATATACTTTAAATACAAATAAAAGCAAT

Coding sequence (CDS)

ATGAGGCATCTTTGCCTCTTCTCTCTGCTCCTCTTGCCCTTGCTTCTTCCCGCCACCACTAACCTTTTAGTTCACGGGCGAGTGCCCCGGCCCGATGCCACGGCCGAGATTGGGCAGCAGGATGGGTCCGATGCTCGTGAATTCAAATTGAAACCAAAGGATGGCGGTGGTGGTGATGGTGGTGGTTCGGACACGTCGAATCAGCGAGTGTTTACATTGGCGTCAGGACCGAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLFSLLLLPLLLPATTNLLVHGRVPRPDATAEIGQQDGSDAREFKLKPKDGGGGDGGGSDTSNQRVFTLASGPSRRGDGHK

Homology

[Close]

BLAST of Bhi10G001181 vs. TrEMBL
Match: tr|A0A0A0LNA9|A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-10
Identity = 51/70 (72.86%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 19  TTNLLVHGRVPRPDATAEIGQQDGSDAREFKLKPK---DGXXXXXXXXXTSNQRVFTLAS 78
           T+NLLVHGR  +PDAT EI    GS A EFKLKPK     XXXXXXXXX   QRVFTLAS
Sbjct: 69  TSNLLVHGRALQPDATVEI----GSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVFTLAS 128

Query: 79  GPSRRGDGHK 86
           GPSRRGDGHK
Sbjct: 129 GPSRRGDGHK 134

[Close]

BLAST of Bhi10G001181 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 51/70 (72.86%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 19  TTNLLVHGRVPRPDATAEIGQQDGSDAREFKLKPK---DGXXXXXXXXXTSNQRVFTLAS 78
           T+NLLVHGR  +PDAT EI    GS A EFKLKPK     XXXXXXXXX   QRVFTLAS
Sbjct: 69  TSNLLVHGRALQPDATVEI----GSHAHEFKLKPKXXXXXXXXXXXXXXXXXQRVFTLAS 128

Query: 79  GPSRRGDGHK 86
           GPSRRGDGHK
Sbjct: 129 GPSRRGDGHK 134

The following BLAST results are available for this feature:

BLAST of Bhi10G001181 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10G001181 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10G001181 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNA9\|A0A0A0LNA9_CUCSA	7.2e-10	72.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1	[more]

BLAST of Bhi10G001181 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63303.1	1.1e-09	72.86	hypothetical protein Csa_2G425800 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001181	Bhi10M001181	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi10G001181	Csa2G425800	Cucumber (Chinese Long) v2	cuwgoB185
Bhi10G001181	ClCG02G008180	Watermelon (Charleston Gray)	wcgwgoB294
Bhi10G001181	CSPI02G26970	Wild cucumber (PI 183967)	cpiwgoB171
Bhi10G001181	CmaCh20G009730	Cucurbita maxima (Rimu)	cmawgoB0691
Bhi10G001181	CmoCh20G009830	Cucurbita moschata (Rifu)	cmowgoB0684
Bhi10G001181	Lsi10G001780	Bottle gourd (USVL1VR-Ls)	lsiwgoB085
Bhi10G001181	CsaV3_2G035500	Cucumber (Chinese Long) v3	cucwgoB191
Bhi10G001181	Cla006752	Watermelon (97103) v1	wgowmB405
Bhi10G001181	Cla97C02G034820	Watermelon (97103) v2	wgowmbB362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi10G001181	Cucumber (Gy14) v2	cgybwgoB179
Bhi10G001181	Cucumber (Gy14) v1	cgywgoB077
Bhi10G001181	Cucumber (Gy14) v1	cgywgoB076
Bhi10G001181	Cucumber (Gy14) v2	cgybwgoB168
Bhi10G001181	Cucurbita maxima (Rimu)	cmawgoB0696
Bhi10G001181	Cucurbita maxima (Rimu)	cmawgoB0755
Bhi10G001181	Cucurbita maxima (Rimu)	cmawgoB0759
Bhi10G001181	Cucurbita moschata (Rifu)	cmowgoB0690
Bhi10G001181	Cucurbita moschata (Rifu)	cmowgoB0745
Bhi10G001181	Cucurbita moschata (Rifu)	cmowgoB0749
Bhi10G001181	Cucurbita pepo (Zucchini)	cpewgoB0358
Bhi10G001181	Cucurbita pepo (Zucchini)	cpewgoB0950
Bhi10G001181	Wild cucumber (PI 183967)	cpiwgoB184
Bhi10G001181	Cucumber (Chinese Long) v3	cucwgoB180
Bhi10G001181	Cucumber (Chinese Long) v2	cuwgoB174
Bhi10G001181	Bottle gourd (USVL1VR-Ls)	lsiwgoB069
Bhi10G001181	Melon (DHL92) v3.6.1	medwgoB125
Bhi10G001181	Melon (DHL92) v3.6.1	medwgoB128
Bhi10G001181	Melon (DHL92) v3.5.1	mewgoB123
Bhi10G001181	Melon (DHL92) v3.5.1	mewgoB126
Bhi10G001181	Watermelon (Charleston Gray)	wcgwgoB299
Bhi10G001181	Watermelon (97103) v2	wgowmbB370
Bhi10G001181	Watermelon (97103) v1	wgowmB382
Bhi10G001181	Silver-seed gourd	carwgoB0497
Bhi10G001181	Silver-seed gourd	carwgoB1106