Cp4.1LG16g01480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g01480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 3389303 .. 3389554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCATCATCTCTACCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAGCGGTAGCGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCATCATCTCTACCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAGCGGTAGCGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCATCATCTCTACCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAGCGGTAGCGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

Protein sequence

MRHHHLYLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGSGSEGGGGGFDMSNQRVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of Cp4.1LG16g01480 vs. TrEMBL
Match: A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-18
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1 

Query: 5   HLYLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGSGSEGG 64
           HL LLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD  GGG   + G
Sbjct: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGG---DSG 111

Query: 65  GGGFDMSNQRVFTLASGPSRRGDGHK 84
           GGG D SNQRVFTLASGPSRRGDGHK
Sbjct: 112 GGGSDTSNQRVFTLASGPSRRGDGHK 134

[Close]
BLAST of Cp4.1LG16g01480 vs. NCBI nr
Match: gi|700208184|gb|KGN63303.1| (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1 

Query: 5   HLYLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGSGSEGG 64
           HL LLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD  GGG   + G
Sbjct: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGG---DSG 111

Query: 65  GGGFDMSNQRVFTLASGPSRRGDGHK 84
           GGG D SNQRVFTLASGPSRRGDGHK
Sbjct: 112 GGGSDTSNQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g01480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g01480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA9_CUCSA8.5e-1870.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of Cp4.1LG16g01480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g01480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208184|gb|KGN63303.1|1.2e-1770.93hypothetical protein Csa_2G425800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g01480.1Cp4.1LG16g01480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g01480CmaCh20G009730Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g01480CmoCh20G009830Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g01480Lsi10G001780Bottle gourd (USVL1VR-Ls)cpelsiB220
Cp4.1LG16g01480CsaV3_2G035500Cucumber (Chinese Long) v3cpecucB0337
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g01480Cucumber (Chinese Long) v3cpecucB0338
Cp4.1LG16g01480Cucumber (Chinese Long) v3cpecucB0364
Cp4.1LG16g01480Wax gourdcpewgoB0358
Cp4.1LG16g01480Wax gourdcpewgoB0366
Cp4.1LG16g01480Wax gourdcpewgoB0370
Cp4.1LG16g01480Cucurbita pepo (Zucchini)cpecpeB309
Cp4.1LG16g01480Cucumber (Gy14) v1cgycpeB0111
Cp4.1LG16g01480Cucumber (Gy14) v1cgycpeB0217
Cp4.1LG16g01480Cucumber (Gy14) v1cgycpeB0972
Cp4.1LG16g01480Cucurbita maxima (Rimu)cmacpeB626
Cp4.1LG16g01480Cucurbita moschata (Rifu)cmocpeB575
Cp4.1LG16g01480Wild cucumber (PI 183967)cpecpiB272
Cp4.1LG16g01480Wild cucumber (PI 183967)cpecpiB275
Cp4.1LG16g01480Wild cucumber (PI 183967)cpecpiB299
Cp4.1LG16g01480Cucumber (Chinese Long) v2cpecuB270
Cp4.1LG16g01480Cucumber (Chinese Long) v2cpecuB272
Cp4.1LG16g01480Cucumber (Chinese Long) v2cpecuB297
Cp4.1LG16g01480Bottle gourd (USVL1VR-Ls)cpelsiB236
Cp4.1LG16g01480Watermelon (Charleston Gray)cpewcgB254
Cp4.1LG16g01480Watermelon (Charleston Gray)cpewcgB262
Cp4.1LG16g01480Watermelon (Charleston Gray)cpewcgB270
Cp4.1LG16g01480Watermelon (97103) v1cpewmB285
Cp4.1LG16g01480Watermelon (97103) v1cpewmB292
Cp4.1LG16g01480Watermelon (97103) v1cpewmB294
Cp4.1LG16g01480Melon (DHL92) v3.5.1cpemeB260
Cp4.1LG16g01480Melon (DHL92) v3.5.1cpemeB264
Cp4.1LG16g01480Melon (DHL92) v3.5.1cpemeB282
Cp4.1LG16g01480Cucumber (Gy14) v2cgybcpeB196
Cp4.1LG16g01480Cucumber (Gy14) v2cgybcpeB772
Cp4.1LG16g01480Melon (DHL92) v3.6.1cpemedB306
Cp4.1LG16g01480Melon (DHL92) v3.6.1cpemedB328
Cp4.1LG16g01480Silver-seed gourdcarcpeB0576
Cp4.1LG16g01480Silver-seed gourdcarcpeB1322