Cp4.1LG16g01480.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g01480.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 3389303 .. 3389554 (-)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCATCATCTCTACCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAGCGGTAGCGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCATCATCTCTACCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAGCGGTAGCGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCATCATCTCTACCTGCTCTCCCTCCTCCTCTTACCCTTGCTTCTTCCCGCCACCTCTACTTCACTACTCCACAGGAGAGCCCTCCAGGCCAACTCCGATGCCCATGAATTCAAATTGAAACCAAAGGACGGTGGTGGTGGTGGTAGCGGTAGCGAGGGCGGCGGTGGCGGTTTCGACATGTCGAATCAGCGAGTGTTCACGTTGGCGTCAGGACCCAGCAGGAGAGGAGATGGGCACAAGTGA

Protein sequence

MRHHHLYLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGSGSEGGGGGFDMSNQRVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of Cp4.1LG16g01480.1 vs. TrEMBL
Match: A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-18
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1 

Query: 5   HLYLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGSGSEGG 64
           HL LLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD  GGG   + G
Sbjct: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGG---DSG 111

Query: 65  GGGFDMSNQRVFTLASGPSRRGDGHK 84
           GGG D SNQRVFTLASGPSRRGDGHK
Sbjct: 112 GGGSDTSNQRVFTLASGPSRRGDGHK 134

[Close]
BLAST of Cp4.1LG16g01480.1 vs. NCBI nr
Match: gi|700208184|gb|KGN63303.1| (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1 

Query: 5   HLYLLSLLLLPLLLPATSTSLL-HRRALQAN------SDAHEFKLKPKDGGGGGSGSEGG 64
           HL LLSLLLLPLLLP T+++LL H RALQ +      S AHEFKLKPKD  GGG   + G
Sbjct: 52  HLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGG---DSG 111

Query: 65  GGGFDMSNQRVFTLASGPSRRGDGHK 84
           GGG D SNQRVFTLASGPSRRGDGHK
Sbjct: 112 GGGSDTSNQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g01480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g01480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA9_CUCSA8.5e-1870.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of Cp4.1LG16g01480.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g01480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208184|gb|KGN63303.1|1.2e-1770.93hypothetical protein Csa_2G425800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG16g01480Cp4.1LG16g01480gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG16g01480.1:cds:001Cp4.1LG16g01480.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG16g01480.1Cp4.1LG16g01480.1-proteinpolypeptide