CsaV3_2G007880 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G007880
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 4155479 .. 4156693 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATTATTATCTCTCCCTTCTCACTCTCTCCAACCACCTCCATAGACACACGCTTGGAAACTTTTAGATTATTTGCCTATATAAACACACACACTCACACTTCAACAATTCACAAGCAATCCATCTCTTTCTCCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAGAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGATAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCTCCACTGTCTCCGCCACCACCAACCGAACAACTCCGTCTGCTGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCACGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGAATCCTATTTCATTTCCTTATTATTATTGTTAGGCTAAGTTATAAGTTATAACAAATAGTCTTCAACTTTCTACTTTGTTTCAAAATTATCTCTATACTTTCGAAAGCTGCAATATTATTCCTAAACTATTATAAACAATTAAAAACTATTCTCGAGAGTGTCTTTAAAAATTTCCAACAAACAACTTAATGCTTTGAAAATTACGTGTGACAATGACTTAAAAAGATGTGACTCAAATTTTTGGTGTTTATGTCACTTGCTACCCAGTTTCATATTTCAAATTCTATTTAAATTCTAAAAGATTTCTATTTCAGAAGTATGAAATGTTTAAGAAAATTTAGAGATAATATTGCAAATTTTAAAAGTAGGTGATGATATTTTCTTAAACAAATGAAAAAGTTTGAGGGTATTTTTTATAATTTAAACTTATTATTATTCTAAAATTAGGTTCTCTTATGCTTTATTATATTAATTTTAATTTGTATTCTATGTAGGCTCTCTCTCCCTCTATATATTTAATGTCTTTAATTTTAAGCTCTACCCTCTTTCTTAGCCTTAGAGAAATTATGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAAATGTTCTTTGGGGAAAAATAAAAGGAATCAAAAAGTGTTATATATTATTTATGCAGTTACCTATTATTATTCCATATGTAAATAGAGTTCCTTTTATTTTTACCTTTCTTCATTT

mRNA sequence

TTAATTATTATCTCTCCCTTCTCACTCTCTCCAACCACCTCCATAGACACACGCTTGGAAACTTTTAGATTATTTGCCTATATAAACACACACACTCACACTTCAACAATTCACAAGCAATCCATCTCTTTCTCCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAGAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGATAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCTCCACTGTCTCCGCCACCACCAACCGAACAACTCCGTCTGCTGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCACGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

TTAATTATTATCTCTCCCTTCTCACTCTCTCCAACCACCTCCATAGACACACGCTTGGAAACTTTTAGATTATTTGCCTATATAAACACACACACTCACACTTCAACAATTCACAAGCAATCCATCTCTTTCTCCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAGAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGATAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCTCCACTGTCTCCGCCACCACCAACCGAACAACTCCGTCTGCTGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCACGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Protein sequence

LIIISPFSLSPTTSIDTRLETFRLFAYINTHTHTSTIHKQSISFSSLFILGSKVSHARMRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL

Homology

[Close]

BLAST of CsaV3_2G007880 vs. NCBI nr
Match: KGN61084.1 (hypothetical protein Csa_2G047780 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 3.9e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of CsaV3_2G007880 vs. NCBI nr
Match: OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 38/104 (36.54%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRS  S R RR+   +++ +  R R+I L +LP + +S + S  T       ++ ++L  
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT-------SVERKLEE 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  LQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]

BLAST of CsaV3_2G007880 vs. TrEMBL
Match: tr|A0A0A0LJ57|A0A0A0LJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of CsaV3_2G007880 vs. TrEMBL
Match: tr|A0A1R3KLV4|A0A1R3KLV4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 38/104 (36.54%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRS  S R RR+   +++ +  R R+I L +LP + +S + S  T       ++ ++L  
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT-------SVERKLEE 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  LQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

The following BLAST results are available for this feature:

BLAST of CsaV3_2G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61084.1	3.9e-48	100.00	hypothetical protein Csa_2G047780 [Cucumis sativus]	[more]
OMP08066.1	1.8e-05	36.54	hypothetical protein COLO4_06805 [Corchorus olitorius]	[more]

BLAST of CsaV3_2G007880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ57\|A0A0A0LJ57_CUCSA	2.6e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1	[more]
tr\|A0A1R3KLV4\|A0A1R3KLV4_9ROSI	1.2e-05	36.54	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G007880.1	CsaV3_2G007880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 54..161
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 112..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G007880	CmaCh05G006620	Cucurbita maxima (Rimu)	cmacucB0928
CsaV3_2G007880	CmoCh05G006940	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G007880	Cp4.1LG11g05850	Cucurbita pepo (Zucchini)	cpecucB0108
CsaV3_2G007880	CsGy2G005660	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G007880	Cla022865	Watermelon (97103) v1	cucwmB175
CsaV3_2G007880	MELO3C004098	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G007880	ClCG11G012610	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G007880	Lsi11G007170	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G007880	MELO3C004098.2	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G007880	Cla97C11G218470	Watermelon (97103) v2	cucwmbB114
CsaV3_2G007880	Bhi06G001185	Wax gourd	cucwgoB145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G007880	Bottle gourd (USVL1VR-Ls)	cuclsiB146
CsaV3_2G007880	Melon (DHL92) v3.5.1	cucmeB118
CsaV3_2G007880	Melon (DHL92) v3.6.1	cucmedB111
CsaV3_2G007880	Watermelon (Charleston Gray)	cucwcgB158
CsaV3_2G007880	Watermelon (97103) v1	cucwmB182
CsaV3_2G007880	Watermelon (97103) v2	cucwmbB145
CsaV3_2G007880	Wax gourd	cucwgoB221
CsaV3_2G007880	Cucumber (Chinese Long) v3	cuccucB008
CsaV3_2G007880	Silver-seed gourd	carcucB0066
CsaV3_2G007880	Silver-seed gourd	carcucB0148
CsaV3_2G007880	Silver-seed gourd	carcucB0538
CsaV3_2G007880	Cucumber (Gy14) v2	cgybcucB017
CsaV3_2G007880	Cucumber (Gy14) v1	cgycucB097
CsaV3_2G007880	Cucurbita maxima (Rimu)	cmacucB0083
CsaV3_2G007880	Cucurbita maxima (Rimu)	cmacucB0136
CsaV3_2G007880	Cucurbita moschata (Rifu)	cmocucB0072
CsaV3_2G007880	Cucurbita moschata (Rifu)	cmocucB0122
CsaV3_2G007880	Cucurbita pepo (Zucchini)	cpecucB0452
CsaV3_2G007880	Cucurbita pepo (Zucchini)	cpecucB0827
CsaV3_2G007880	Wild cucumber (PI 183967)	cpicucB020
CsaV3_2G007880	Wild cucumber (PI 183967)	cpicucB080