Cp4.1LG11g05850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g05850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG11 : 3511018 .. 3511335 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTCTTCACCTCCCAAAAAACACCACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

mRNA sequence

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTCTTCACCTCCCAAAAAACACCACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTCTTCACCTCCCAAAAAACACCACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL
Homology
[Close]
BLAST of Cp4.1LG11g05850 vs. TrEMBL
Match: A0A0A0LJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-37
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 1 

Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KLLHLPK+ TSSS +SA    TTPS AMHKRLR
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKH-TSSSTVSATTNRTTPSAAMHKRLR 60

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 106
           NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]
BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match: gi|700205965|gb|KGN61084.1| (hypothetical protein Csa_2G047780 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-37
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 1 

Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KLLHLPK+ TSSS +SA    TTPS AMHKRLR
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKH-TSSSTVSATTNRTTPSAAMHKRLR 60

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 106
           NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g05850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g05850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ57_CUCSA2.1e-3780.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047780 PE=4 SV=1[more]
BLAST of Cp4.1LG11g05850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205965|gb|KGN61084.1|3.0e-3780.95hypothetical protein Csa_2G047780 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g05850.1Cp4.1LG11g05850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 55..98
score: 1.0
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 53..104
score: 9.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g05850CmaCh05G006620Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g05850CmoCh05G006940Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g05850Cla022865Watermelon (97103) v1cpewmB123
Cp4.1LG11g05850Csa2G047780Cucumber (Chinese Long) v2cpecuB098
Cp4.1LG11g05850MELO3C004098Melon (DHL92) v3.5.1cpemeB103
Cp4.1LG11g05850ClCG11G012610Watermelon (Charleston Gray)cpewcgB099
Cp4.1LG11g05850MELO3C004098.2Melon (DHL92) v3.6.1cpemedB129
Cp4.1LG11g05850CsaV3_2G007880Cucumber (Chinese Long) v3cpecucB0108
Cp4.1LG11g05850Bhi06G001185Wax gourdcpewgoB0126
Cp4.1LG11g05850CsGy2G005660Cucumber (Gy14) v2cgybcpeB164
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g05850Silver-seed gourdcarcpeB0079
Cp4.1LG11g05850Cucurbita pepo (Zucchini)cpecpeB129
Cp4.1LG11g05850Cucumber (Gy14) v1cgycpeB0170
Cp4.1LG11g05850Cucurbita maxima (Rimu)cmacpeB110
Cp4.1LG11g05850Cucurbita moschata (Rifu)cmocpeB086
Cp4.1LG11g05850Wild cucumber (PI 183967)cpecpiB095
Cp4.1LG11g05850Bottle gourd (USVL1VR-Ls)cpelsiB070
Cp4.1LG11g05850Watermelon (Charleston Gray)cpewcgB116
Cp4.1LG11g05850Cucumber (Gy14) v2cgybcpeB030