MELO3C004098.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004098.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transcription factor, putative
Location	chr05 : 24096924 .. 24097806 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACACAAGCAATCCATCTCTTTCTCCTCTCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCACAAAACACACCTCCTCCTCCCCCGTCTCCACCACTGCCAACCGAACAACTCCATCTGCTGCCATGCACAAGAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACCTCTTTCTATGGCCTTTGAATCATATCGTTTTCTTATTATTATTAGTAGGCTAAGTTATAACAAATAGTCTTCAATTTTCTTCTTTGTTTCAAAATTATCCTCCATACTTTCAAGAGCTGCAATATTATCCTTAAACTATCCTAAACAATTACAAAACTATTCTTGAGAGTATAATATTTTATTTTAGAAATTTCCGATAGAGAATTGAATGTTTAGAAAACTACATGTGATAATGACTTAAAACGATGTAGTGACTCAAATTTTTGTTCTTTATTCATTATGTCACTTGCTACCCAATTTCGTATCTTAGTTTCTATCCAAATTCTTAAAGATTTCTATTTCAAGAGTATTTTTTGAATGTTTATGAAAATTTAAGGATGATATTGTAATTTTTGAAAGTATGATGATATTTTTTAAACAAATGAAAAAGTTTGAGGGTATTTTTTATAATTTAAATTTATTATTATTCTAAAATAATTAGGTTCTCTTATGCTTGAATATATTAATTTTAATTA

mRNA sequence

AATACACAAGCAATCCATCTCTTTCTCCTCTCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCACAAAACACACCTCCTCCTCCCCCGTCTCCACCACTGCCAACCGAACAACTCCATCTGCTGCCATGCACAAGAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACCTCTTTCTATGGCCTTTGAATCATATCGTTTTCTTATTATTATTAGTAGGCTAAGTTATAACAAATAGTCTTCAATTTTCTTCTTTGTTTCAAAATTATCCTCCATACTTTCAAGAGCTGCAATATTATCCTTAAACTATCCTAAACAATTACAAAACTATTCTTGAGAGTATAATATTTTATTTTAGAAATTTCCGATAGAGAATTGAATGTTTAGAAAACTACATGTGATAATGACTTAAAACGATGTAGTGACTCAAAtTTTTGTTCTTTATTCATTATGTCACTTGCTACCCAATTTCGTATCTTAGTTTCTATCCAAATTCTTAAAGATTTCTATTTCAAGAGTATTTTTTGAATGTTTATGAAAATTTAAGGATGATATTGTAATTTTTGAAAGTATGATGATATTTTTTAAACAAATGAAAAAGTTTGAGGGTATTTTTTATAATTTAAATTTATTATTATTCTAAAATAATTAGGTTCTCTTATGCTTGAATATATTAATTTTAATTA

Coding sequence (CDS)

ATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCACAAAACACACCTCCTCCTCCCCCGTCTCCACCACTGCCAACCGAACAACTCCATCTGCTGCCATGCACAAGAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTTANRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL

Homology

[Close]

BLAST of MELO3C004098.2 vs. NCBI nr
Match: KGN61084.1 (hypothetical protein Csa_2G047780 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 4.4e-45
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTTANRTTPSAAMHKRLRN 60
           MRSIHSFRSRRQATTISKLKPSRRRR+KLLHL KHTSSS VS T NRTTPSAAMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 105
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of MELO3C004098.2 vs. TAIR10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators)

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 24 RRRLKLLHLTKHTSSSPVSTTANRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTAD 83
          RR+     L K     P  +      P  A+H+R++ L+ LVP       L+ LF++TAD
Sbjct: 18 RRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTAD 77

Query: 84 YIHALQLKLNILKDL 99
          YI AL++K+ +++ +
Sbjct: 78 YILALEMKVKVMQTM 92

[Close]

BLAST of MELO3C004098.2 vs. TrEMBL
Match: tr|A0A0A0LJ57|A0A0A0LJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.9e-45
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTTANRTTPSAAMHKRLRN 60
           MRSIHSFRSRRQATTISKLKPSRRRR+KLLHL KHTSSS VS T NRTTPSAAMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 105
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of MELO3C004098.2 vs. TrEMBL
Match: tr|A0A1R3KLV4|A0A1R3KLV4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-04
Identity = 35/104 (33.65%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTTANRTTPSAAMHKRLRN 60
           MRS  S R RR+      L   R+ R++ ++L+   +++   + + RT    ++ ++L  
Sbjct: 1   MRSKRSPRGRRKVL----LTRGRKLRIRQINLSNLPNNNNSVSESLRT----SVERKLEE 60

Query: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 105
           LQR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  LQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

The following BLAST results are available for this feature:

BLAST of MELO3C004098.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61084.1	4.4e-45	95.19	hypothetical protein Csa_2G047780 [Cucumis sativus]	[more]

BLAST of MELO3C004098.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47270.1	6.0e-04	32.00	sequence-specific DNA binding transcription factors;transcription regulators	[more]

BLAST of MELO3C004098.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004098.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ57\|A0A0A0LJ57_CUCSA	2.9e-45	95.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1	[more]
tr\|A0A1R3KLV4\|A0A1R3KLV4_9ROSI	9.4e-04	33.65	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004098.2.1	MELO3C004098.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 21..103
None	No IPR available	PANTHER	PTHR33124:SF14	SUBFAMILY NOT NAMED	coord: 21..103
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 54..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004098.2	Csa2G047780	Cucumber (Chinese Long) v2	cumedB132
MELO3C004098.2	CmaCh05G006620	Cucurbita maxima (Rimu)	cmamedB831
MELO3C004098.2	CmoCh05G006940	Cucurbita moschata (Rifu)	cmomedB822
MELO3C004098.2	Cp4.1LG11g05850	Cucurbita pepo (Zucchini)	cpemedB129
MELO3C004098.2	CsGy2G005660	Cucumber (Gy14) v2	cgybmedB118
MELO3C004098.2	Cla022865	Watermelon (97103) v1	medwmB411
MELO3C004098.2	ClCG11G012610	Watermelon (Charleston Gray)	medwcgB362
MELO3C004098.2	Cla97C11G218470	Watermelon (97103) v2	medwmbB360
MELO3C004098.2	Bhi06G001185	Wax gourd	medwgoB456
MELO3C004098.2	CsaV3_2G007880	Cucumber (Chinese Long) v3	cucmedB134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004098.2	Cucumber (Gy14) v2	cgybmedB064
MELO3C004098.2	Cucumber (Gy14) v1	cgymedB104
MELO3C004098.2	Cucurbita maxima (Rimu)	cmamedB081
MELO3C004098.2	Cucurbita maxima (Rimu)	cmamedB142
MELO3C004098.2	Cucurbita moschata (Rifu)	cmomedB075
MELO3C004098.2	Cucurbita moschata (Rifu)	cmomedB132
MELO3C004098.2	Cucurbita pepo (Zucchini)	cpemedB403
MELO3C004098.2	Cucurbita pepo (Zucchini)	cpemedB760
MELO3C004098.2	Wild cucumber (PI 183967)	cpimedB067
MELO3C004098.2	Wild cucumber (PI 183967)	cpimedB132
MELO3C004098.2	Cucumber (Chinese Long) v2	cumedB070
MELO3C004098.2	Melon (DHL92) v3.6.1	medmedB109
MELO3C004098.2	Bottle gourd (USVL1VR-Ls)	lsimedB123
MELO3C004098.2	Watermelon (Charleston Gray)	medwcgB388
MELO3C004098.2	Watermelon (97103) v1	medwmB427
MELO3C004098.2	Silver-seed gourd	carmedB0062
MELO3C004098.2	Silver-seed gourd	carmedB0517
MELO3C004098.2	Cucumber (Chinese Long) v3	cucmedB075
MELO3C004098.2	Watermelon (97103) v2	medwmbB389
MELO3C004098.2	Wax gourd	medwgoB494