CmaCh05G006620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G006620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	sequence-specific DNA binding transcription factors;transcription regulators
Location	Cma_Chr05 : 3392651 .. 3392965 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

mRNA sequence

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

Homology

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BLAST of CmaCh05G006620 vs. TrEMBL
Match: A0A0A0LJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-38
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 1


Query: 1   MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRN 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KL+HLPK+TSSS +SA    TTPS AMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           LQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of CmaCh05G006620 vs. NCBI nr
Match: gi|700205965|gb|KGN61084.1| (hypothetical protein Csa_2G047780 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 1


Query: 1   MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRN 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KL+HLPK+TSSS +SA    TTPS AMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           LQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

The following BLAST results are available for this feature:

BLAST of CmaCh05G006620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G006620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ57_CUCSA	1.1e-38	80.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047780 PE=4 SV=1	[more]

BLAST of CmaCh05G006620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh05G006620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205965\|gb\|KGN61084.1\|	1.6e-38	80.77	hypothetical protein Csa_2G047780 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G006620.1	CmaCh05G006620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 54..97 score: 9.9
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 52..103 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G006620	Cla022865	Watermelon (97103) v1	cmawmB769
CmaCh05G006620	Csa2G047780	Cucumber (Chinese Long) v2	cmacuB786
CmaCh05G006620	MELO3C004098	Melon (DHL92) v3.5.1	cmameB737
CmaCh05G006620	ClCG11G012610	Watermelon (Charleston Gray)	cmawcgB690
CmaCh05G006620	CmoCh05G006940	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G006620	Cp4.1LG11g05850	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G006620	MELO3C004098.2	Melon (DHL92) v3.6.1	cmamedB831
CmaCh05G006620	CsaV3_2G007880	Cucumber (Chinese Long) v3	cmacucB0928
CmaCh05G006620	Cla97C11G218470	Watermelon (97103) v2	cmawmbB808
CmaCh05G006620	Bhi06G001185	Wax gourd	cmawgoB0925
CmaCh05G006620	CsGy2G005660	Cucumber (Gy14) v2	cgybcmaB252

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G006620	Cucurbita pepo (Zucchini)	cmacpeB782
CmaCh05G006620	Bottle gourd (USVL1VR-Ls)	cmalsiB709
CmaCh05G006620	Cucumber (Gy14) v2	cgybcmaB136
CmaCh05G006620	Silver-seed gourd	carcmaB0083
CmaCh05G006620	Cucurbita maxima (Rimu)	cmacmaB117
CmaCh05G006620	Cucurbita maxima (Rimu)	cmacmaB168
CmaCh05G006620	Cucumber (Gy14) v1	cgycmaB0185
CmaCh05G006620	Cucurbita moschata (Rifu)	cmacmoB760
CmaCh05G006620	Wild cucumber (PI 183967)	cmacpiB795
CmaCh05G006620	Watermelon (Charleston Gray)	cmawcgB705