CmaCh05G006620.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G006620.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	sequence-specific DNA binding transcription factors;transcription regulators
Location	Cma_Chr05 : 3392651 .. 3392965 (+)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

mRNA sequence

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

Homology

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BLAST of CmaCh05G006620.1 vs. TrEMBL
Match: A0A0A0LJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-38
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 1


Query: 1   MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRN 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KL+HLPK+TSSS +SA    TTPS AMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           LQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of CmaCh05G006620.1 vs. NCBI nr
Match: gi|700205965|gb|KGN61084.1| (hypothetical protein Csa_2G047780 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 1


Query: 1   MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRN 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KL+HLPK+TSSS +SA    TTPS AMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           LQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

The following BLAST results are available for this feature:

BLAST of CmaCh05G006620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G006620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ57_CUCSA	1.1e-38	80.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047780 PE=4 SV=1	[more]

BLAST of CmaCh05G006620.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh05G006620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205965\|gb\|KGN61084.1\|	1.6e-38	80.77	hypothetical protein Csa_2G047780 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G006620	CmaCh05G006620	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G006620.1	CmaCh05G006620.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G006620.1.exon.1	CmaCh05G006620.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G006620.1.CDS.1	CmaCh05G006620.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 54..97 score: 9.9
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 52..103 score: 9.3