CsaV3_2G007880.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G007880.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 4155479 .. 4156693 (+)
Sequence length489
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATTATTATCTCTCCCTTCTCACTCTCTCCAACCACCTCCATAGACACACGCTTGGAAACTTTTAGATTATTTGCCTATATAAACACACACACTCACACTTCAACAATTCACAAGCAATCCATCTCTTTCTCCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAGAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGATAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCTCCACTGTCTCCGCCACCACCAACCGAACAACTCCGTCTGCTGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCACGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGAATCCTATTTCATTTCCTTATTATTATTGTTAGGCTAAGTTATAAGTTATAACAAATAGTCTTCAACTTTCTACTTTGTTTCAAAATTATCTCTATACTTTCGAAAGCTGCAATATTATTCCTAAACTATTATAAACAATTAAAAACTATTCTCGAGAGTGTCTTTAAAAATTTCCAACAAACAACTTAATGCTTTGAAAATTACGTGTGACAATGACTTAAAAAGATGTGACTCAAATTTTTGGTGTTTATGTCACTTGCTACCCAGTTTCATATTTCAAATTCTATTTAAATTCTAAAAGATTTCTATTTCAGAAGTATGAAATGTTTAAGAAAATTTAGAGATAATATTGCAAATTTTAAAAGTAGGTGATGATATTTTCTTAAACAAATGAAAAAGTTTGAGGGTATTTTTTATAATTTAAACTTATTATTATTCTAAAATTAGGTTCTCTTATGCTTTATTATATTAATTTTAATTTGTATTCTATGTAGGCTCTCTCTCCCTCTATATATTTAATGTCTTTAATTTTAAGCTCTACCCTCTTTCTTAGCCTTAGAGAAATTATGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAAATGTTCTTTGGGGAAAAATAAAAGGAATCAAAAAGTGTTATATATTATTTATGCAGTTACCTATTATTATTCCATATGTAAATAGAGTTCCTTTTATTTTTACCTTTCTTCATTT

mRNA sequence

TTAATTATTATCTCTCCCTTCTCACTCTCTCCAACCACCTCCATAGACACACGCTTGGAAACTTTTAGATTATTTGCCTATATAAACACACACACTCACACTTCAACAATTCACAAGCAATCCATCTCTTTCTCCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAGAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGATAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCTCCACTGTCTCCGCCACCACCAACCGAACAACTCCGTCTGCTGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCACGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

TTAATTATTATCTCTCCCTTCTCACTCTCTCCAACCACCTCCATAGACACACGCTTGGAAACTTTTAGATTATTTGCCTATATAAACACACACACTCACACTTCAACAATTCACAAGCAATCCATCTCTTTCTCCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAGAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGATAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCTCCACTGTCTCCGCCACCACCAACCGAACAACTCCGTCTGCTGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCACGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Protein sequence

LIIISPFSLSPTTSIDTRLETFRLFAYINTHTHTSTIHKQSISFSSLFILGSKVSHARMRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Homology
[Close]
BLAST of CsaV3_2G007880.1 vs. NCBI nr
Match: KGN61084.1 (hypothetical protein Csa_2G047780 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 3.9e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]
BLAST of CsaV3_2G007880.1 vs. NCBI nr
Match: OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 38/104 (36.54%), Postives = 66/104 (63.46%), Query Frame = 0 

Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRS  S R RR+   +++ +  R R+I L +LP + +S + S  T       ++ ++L  
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT-------SVERKLEE 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  LQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]
BLAST of CsaV3_2G007880.1 vs. TrEMBL
Match: tr|A0A0A0LJ57|A0A0A0LJ57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]
BLAST of CsaV3_2G007880.1 vs. TrEMBL
Match: tr|A0A1R3KLV4|A0A1R3KLV4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 38/104 (36.54%), Postives = 66/104 (63.46%), Query Frame = 0 

Query: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
           MRS  S R RR+   +++ +  R R+I L +LP + +S + S  T       ++ ++L  
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT-------SVERKLEE 60

Query: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 163
           LQR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  LQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

The following BLAST results are available for this feature:
BLAST of CsaV3_2G007880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61084.13.9e-48100.00hypothetical protein Csa_2G047780 [Cucumis sativus][more]
OMP08066.11.8e-0536.54hypothetical protein COLO4_06805 [Corchorus olitorius][more]
BLAST of CsaV3_2G007880.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007880.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJ57|A0A0A0LJ57_CUCSA2.6e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1[more]
tr|A0A1R3KLV4|A0A1R3KLV4_9ROSI1.2e-0536.54Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G007880CsaV3_2G007880gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G007880.1.exon1CsaV3_2G007880.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G007880.1.cds1CsaV3_2G007880.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G007880.1CsaV3_2G007880.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 54..161
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 112..155