CsaV3_1G012680 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGAAAATAAAAGGAATTAAAAGGCCATGAAAATAATTGAGGTCATATGTTCTGTCCTACACAGTTATTTCAGGAGCTGCTGAGCACTAATTACTACCATTTCTATTCGAAGAAAAAAGAGAAATCCTTCATCAGTATTGCTATTTTTGAAACAATCACAATATATCTGAATGGGTTCTCTTCATGATCACGACAAGAACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGTTTGAATTTTCTGCTTTCTTTGTTTTAAAGTTTTGATTTCATTATTTGTAGTTTAGTTTCATAACAGTTGCTGGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAGCAGCCGCCAACCGGCCGTGATTTTTGAAGGTGAATTTAGCAAAAAAAAAATAATTTATATATGAAAACAGCTTTCTTTAAATATTAATTCATATGGTAAAATTTAAGGATTGTTATATTAATTAAAACACTGGATAGTATAAATTTAAAGTATAAAGTAGTGTAAATGTATGGGTTTATATCCTTCATTTTCTGAACTTTGTAAAATATGGTGTGACAATCGAACTTTTAAATTCTCTCGATTTAATCAATTTAGATGGTTAGTTATAATTTTCTTTAGAAAAAAAATAGAAGCATTCCTTAAATTAATTCCAAATAATCTGTTTTGTAAAACTAAGCTTACAAATTAAGAATTTTTTTTTGAAAGAGAGTGTCAATTGATAGGTAAAGTTTAAATTTTAAATTAATATAATTCTTTTTTTTTTTATAATTATGTTACGATTAAATGAGTAATATTTAAGGTCAATTATGCCTTGAATATGTATGAAATTAATTTTGAAATGGTTAAAAGTGATTTAAAAAAAAAAATCAGAAGTTTATTTCATAACATCTCTTTAAAGTATGGTTCTTTTAATTTTATAGAATTGGAGACAATAATTTTTTTCATTTTTTAATTATAAATTTTATTCTTCAAAATTACTCTCCTTAGAATTAAACCATTAATTTAGAACAAATTAAATATAATATTTTACTAAAGGATTTTAAAAAATGATAAAATTGACAAAATATTCCTCGTTTATAATAAAATAATTACGTGTAGTTCGTTTTTGTCGAGTAGTGTAAATACGTTGTGTTTTTATTATAATTCTAAAAGGACTATATTATAAAATATTATTTAAAAATTTATAGATTGTTAAAAAGAAGGTAACTTTTAATAAATCTATTTTACTTATCAAATCTAAAACAAAGTAGGTTTAGGAAGGGAACCCATTTATTCTTTTAGTCTAAAGCTAGTTTATCAAATAATAACTAGTTTTCTACTAAATGTATAGTTATTAGTTATCATCAATTACTTTAAAAGTTATGTCAAACTGTAAAGTTTGAACACGATGTATAAAAATGTATAAAAAAGAATTTTGTAGCTCAAACAACTATTCGTGTAAAATGATCGAGATAAATAATTCTAAAACATTACTAGTATCTTTTCTTAAAAGAGAAAATACATTATATATTTTGTCACATAGAATCGACACCGGTGGGATCGGATGAATAGGGTTAGGTCTTATGAATTTGACTTGTAATCATTAGATTTTGGATTTTGTTGATGAAACGTCTATGTTCGTTTTAGATGGGATTGTCGGAGCTTTTCTGACGGTTTTGTTATTCCATCAGAATCATTGGCTTCCATGACGGACAACACACAACGACCCACCAGCCATACTTGTTTTTTGACCATCTGCTTTTTTTGAATCTCAACTCCACTTTATTAATTCAATATTTGTTTCTAAATATTCATGTTCGTCTTTTTCTTTTTCAATTTCATTTCGAATTTACCAACGAATTGTTGCATGTTTTGTGTTTGTTTATTGACAAATTTAATATTATATCATTCAACGGTTGTCATTAATTCAATAA ATGGGTTCTCTTCATGATCACGACAAGAACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAG ATGGGTTCTCTTCATGATCACGACAAGAACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAG MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
BLAST of CsaV3_1G012680 vs. NCBI nr
Match: XP_011653401.1 (PREDICTED: transcription factor PCF8-like [Cucumis sativus] >KGN64714.1 hypothetical protein Csa_1G077150 [Cucumis sativus]) HSP 1 Score: 310.1 bits (793), Expect = 4.9e-81 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. NCBI nr
Match: XP_008443015.1 (PREDICTED: transcription factor TCP10-like [Cucumis melo]) HSP 1 Score: 263.1 bits (671), Expect = 6.9e-67 Identity = 135/174 (77.59%), Postives = 137/174 (78.74%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. NCBI nr
Match: XP_023001760.1 (transcription factor PCF8-like [Cucurbita maxima]) HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42 Identity = 99/156 (63.46%), Postives = 109/156 (69.87%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. NCBI nr
Match: XP_007214360.1 (transcription factor TCP4 [Prunus persica] >ONI10615.1 hypothetical protein PRUPE_4G057100 [Prunus persica]) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13 Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. NCBI nr
Match: XP_008225215.1 (PREDICTED: transcription factor TCP4-like [Prunus mume]) HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13 Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TAIR10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3) HSP 1 Score: 79.3 bits (194), Expect = 2.5e-15 Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TAIR10
Match: AT2G31070.1 (TCP domain protein 10) HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TAIR10
Match: AT3G15030.1 (TCP family transcription factor 4) HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13 Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TAIR10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5) HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13 Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TAIR10
Match: AT3G02150.2 (plastid transcription factor 1) HSP 1 Score: 69.3 bits (168), Expect = 2.6e-12 Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. Swiss-Prot
Match: sp|Q9MAH8|TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 4.6e-14 Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. Swiss-Prot
Match: sp|A2WV68|PCF7_ORYSI (Transcription factor PCF7 OS=Oryza sativa subsp. indica OX=39946 GN=PCF7 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13 Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. Swiss-Prot
Match: sp|Q8LT05|PCF7_ORYSJ (Transcription factor PCF7 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF7 PE=2 SV=2) HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13 Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. Swiss-Prot
Match: sp|O82277|TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. Swiss-Prot
Match: sp|A2ZMR9|PCF8_ORYSI (Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.9e-13 Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TrEMBL
Match: tr|A0A0A0LUP1|A0A0A0LUP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 3.2e-81 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TrEMBL
Match: tr|A0A1S3B7T4|A0A1S3B7T4_CUCME (transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67 Identity = 135/174 (77.59%), Postives = 137/174 (78.74%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TrEMBL
Match: tr|M5WPC7|M5WPC7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G057100 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13 Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TrEMBL
Match: tr|A0A0A0KF06|A0A0A0KF06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G156050 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13 Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0
BLAST of CsaV3_1G012680 vs. TrEMBL
Match: tr|D6MK40|D6MK40_9ASPA (Transcription factor (Fragment) OS=Lycoris longituba OX=272140 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13 Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |