CsGy1G012530 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012530
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor TCP10-like
Location	Chr1 : 7938362 .. 7940796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAATAAAAAGAGGAAAGAACCCTAAAAAAGAAACACATTAAATAATCAATAATGAATATGGAAAAAGAAAATAAAAGGAATTAAAAGGCCATGAAAATAATTGAGGTCATATGTTCTGTCCTACACAGTTATTTCAGGAGCTGCTGAGCACTAATTACTACCATTTCTATTCGAAGAAAAAAGAGAAATCCTTCATCAGTATTGCTATTTTTGAAACAATCACAATATATCTGAATGGGTTCTCTTCATGATCACGACAAGAACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGTTTGAATTTTCTGCTTTCTTTGTTTTAAAGTTTTGATTTCATTATTTGTAGTTTAGTTTCATAACAGTTGCTGGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAGCAGCCGCCAACCGGCCGTGATTTTTGAAGGTGAATTTAGCAAAAAAAAAATAATTTATATATGAAAACAGCTTTCTTTAAATATTAATTCATATGGTAAAATTTAAGGATTGTTATATTAATTAAAACACTGGATAGTATAAATTTAAAGTATAAAGTAGTGTAAATGTATGGGTTTATATCCTTCATTTTCTGAACTTTGTAAAATATGGTGTGACAATCGAACTTTTAAATTCTCTCGATTTAATCAATTTAGATGGTTAGTTATAATTTTCTTTAGAAAAAAAATAGAAGCATTCCTTAAATTAATTCCAAATAATCTGTTTTGTAAAACTAAGCTTACAAATTAAGAATTTTTTTTTGAAAGAGAGTGTCAATTGATAGGTAAAGTTTAAATTTTAAATTAATATAATTCTTTTTTTTTTATAATTATGTTACGATTAAATGAGTAATATTTAAGGTCAATTATGCCTTGAATATGTATGAAATTAATTTTGAAATGGTTAAAAGTGATTTAAAAAAAAAAATCAGAAGTTTATTTCATAACATCTCTTTAAAGTATGGTTCTTTTAATTTTATAGAATTGGAGACAATAATTTTTTTCATTTTTTAATTATAAATTTTATTCTTCAAAATTACTCTCCTTAGAATTAAACCATTAATTTAGAACAAATTAAATATAATATTTTACTAAAGGATTTTAAAAAATGATAAAATTGACAAAATATTCCTCGTTTATAATAAAATAATTACGTGTAGTTCGTTTTTGTCGAGTAGTGTAAATACGTTGTGTTTTATTATAATTCTAAAAGGACTATATTATAAAATATTATTTAAAAATTTATAGATTGTTAAAAAGAAGGTAACTTTTAATAAATCTATTTTACTTATCAAATCTAAAACAAAGTAGGTTTAGGAAGGGAACCCATTTATTCTTTTAGTCTAAAGCTAGTTTATCAAATAATAACTAGTTTTCTACTAAATGTATAGTTATTAGTTATCATCAATTACTTTAAAAGTTATGTCAAACTGTAAAGTTTGAACACGATGTATAAAAATGTATAAAAAAGAATTTTGTAGCTCAAACAACTATTCGTGTAAAATGATCGAGATAAATAATTCTAAAACATTACTAGTATCTTTTCTTAAAAGAGAAAATACATTATATATTTTGTCACATAGAATCGACACCGGTGGGATCGGATGAATAGGGTTAGGTCTTATGAATTTGACTTGTAATCATTAGATTTTGGATTTTGTTGATGAAACGTCTATGTTCGTTTTAGATGGGATTGTCGGAGCTTTTCTGACGGTTTTGTTATTCCATCAGAATCATTGGCTTCCATGACGGACAACACACAACGACCCACCAGCCATACTTGTTTTTTGACCATCTGCTTTTTTTGAATCTCAACTCCACTTTATTAATTCAATATTTGTTTCTAAATATTCATGTTCGTCTTTTTCTTTTTCAATTTCATTTCGAATTTACCAACGAATTGTTGCATGTTTTGTGTTTGTTTATTGACAAATTTAATATTATATCATTCAACGGTTGTCATTAATTCAATAA

mRNA sequence

TGAAATAAAAAGAGGAAAGAACCCTAAAAAAGAAACACATTAAATAATCAATAATGAATATGGAAAAAGAAAATAAAAGGAATTAAAAGGCCATGAAAATAATTGAGGTCATATGTTCTGTCCTACACAGTTATTTCAGGAGCTGCTGAGCACTAATTACTACCATTTCTATTCGAAGAAAAAAGAGAAATCCTTCATCAGTATTGCTATTTTTGAAACAATCACAATATATCTGAATGGGTTCTCTTCATGATCACGACAAGAACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAGCAGCCGCCAACCGGCCGTGATTTTTGAAGAATCATTGGCTTCCATGACGGACAACACACAACGACCCACCAGCCATACTTGTTTTTTGACCATCTGCTTTTTTTGAATCTCAACTCCACTTTATTAATTCAATATTTGTTTCTAAATATTCATGTTCGTCTTTTTCTTTTTCAATTTCATTTCGAATTTACCAACGAATTGTTGCATGTTTTGTGTTTGTTTATTGACAAATTTAATATTATATCATTCAACGGTTGTCATTAATTCAATAA

Coding sequence (CDS)

ATGGGTTCTCTTCATGATCACGACAAGAACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAG

Protein sequence

MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

Homology

[Close]

BLAST of CsGy1G012530 vs. NCBI nr
Match: XP_011653401.1 (PREDICTED: transcription factor PCF8-like [Cucumis sativus] >KGN64714.1 hypothetical protein Csa_1G077150 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 8.3e-81
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60
           MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD
Sbjct: 1   MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60

Query: 61  RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX 120
           RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 175
           XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
Sbjct: 121 XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 174

[Close]

BLAST of CsGy1G012530 vs. NCBI nr
Match: XP_008443015.1 (PREDICTED: transcription factor TCP10-like [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 135/174 (77.59%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 1   MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60
           MGSL DHDK   KI RRNRRL S+  AGAG GKVYTSKGLRARRLRLSAPTAIKFYDLQD
Sbjct: 1   MGSLDDHDKKKAKIGRRNRRLCSS--AGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60

Query: 61  RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX 120
           RLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ F                   
Sbjct: 61  RLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIF-------SLPVPSSSSSSQ 120

Query: 121 XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 175
             SYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Sbjct: 121 FQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE 165

[Close]

BLAST of CsGy1G012530 vs. NCBI nr
Match: XP_023001760.1 (transcription factor PCF8-like [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 2.0e-42
Identity = 99/156 (63.46%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 19  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNA 78
           RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLL NA
Sbjct: 4   RRLRSS----AGSGKVYTSKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNA 63

Query: 79  KSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXXXXSYPLQNFSQKGNLSVF 138
           KSAIDALSRPL+TED    K+SF                     +YPL+NF + GNLSV 
Sbjct: 64  KSAIDALSRPLETEDG---KRSF----PSMASSVPSSSSSSQFLAYPLENFFRNGNLSVL 123

Query: 139 CPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 175
            PMI+N T  EFSG QPPC SQSN  +G P FPMWE
Sbjct: 124 SPMIMNVTPAEFSGMQPPCLSQSNATSGLPSFPMWE 148

[Close]

BLAST of CsGy1G012530 vs. NCBI nr
Match: XP_007214360.1 (transcription factor TCP4 [Prunus persica] >ONI10615.1 hypothetical protein PRUPE_4G057100 [Prunus persica])

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR-PLQT 92
           KVYTSKG R RR RLSAPTAI+FYD+QDRLG  RP++AIDWL+  AK+AI+ALS   L  
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESELPG 177

Query: 93  EDNDC 97
           ++ DC
Sbjct: 178 KEYDC 182

[Close]

BLAST of CsGy1G012530 vs. NCBI nr
Match: XP_008225215.1 (PREDICTED: transcription factor TCP4-like [Prunus mume])

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR-PLQT 92
           KVYTSKG R RR RLSAPTAI+FYD+QDRLG  RP++AIDWL+  AK+AI+ALS   L  
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESELPG 177

Query: 93  EDNDC 97
           ++ DC
Sbjct: 178 KEYDC 182

[Close]

BLAST of CsGy1G012530 vs. TAIR10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR 88
           KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Sbjct: 55  KVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109

[Close]

BLAST of CsGy1G012530 vs. TAIR10
Match: AT2G31070.1 (TCP domain protein 10)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 33 KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL 86
          KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK+AID L
Sbjct: 35 KVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL 87

[Close]

BLAST of CsGy1G012530 vs. TAIR10
Match: AT3G15030.1 (TCP family transcription factor 4)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS 87
           KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK++ID L+
Sbjct: 51  KVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104

[Close]

BLAST of CsGy1G012530 vs. TAIR10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5)

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 20  RLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAK 79
           R+S T        KV T +GLR RR+RLS PTAI+ YDLQDRLG  +P++ IDWLL  AK
Sbjct: 56  RVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAK 115

Query: 80  SAIDALSRPLQ 91
             +D L  PLQ
Sbjct: 116 DDVDKLP-PLQ 125

[Close]

BLAST of CsGy1G012530 vs. TAIR10
Match: AT3G02150.2 (plastid transcription factor 1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-12
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL 86
           KV T +GLR RR+RLS PTAI+ YDLQ+RLG  +P++A+DWLL  AK  ID L
Sbjct: 80  KVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132

[Close]

BLAST of CsGy1G012530 vs. Swiss-Prot
Match: sp|Q9MAH8|TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-14
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR 88
           KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Sbjct: 55  KVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109

[Close]

BLAST of CsGy1G012530 vs. Swiss-Prot
Match: sp|A2WV68|PCF7_ORYSI (Transcription factor PCF7 OS=Oryza sativa subsp. indica OX=39946 GN=PCF7 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL 86
           KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL+ NAK+AID L
Sbjct: 146 KVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDEL 198

[Close]

BLAST of CsGy1G012530 vs. Swiss-Prot
Match: sp|Q8LT05|PCF7_ORYSJ (Transcription factor PCF7 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF7 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL 86
           KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL+ NAK+AID L
Sbjct: 146 KVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDEL 198

[Close]

BLAST of CsGy1G012530 vs. Swiss-Prot
Match: sp|O82277|TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 33 KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL 86
          KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK+AID L
Sbjct: 35 KVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL 87

[Close]

BLAST of CsGy1G012530 vs. Swiss-Prot
Match: sp|A2ZMR9|PCF8_ORYSI (Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-13
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 20  RLSSTADAGAG----VGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL 79
           R S  A A AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL+
Sbjct: 35  RTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLI 94

Query: 80  LNAKSAIDAL 86
             A +AIDAL
Sbjct: 95  RAAAAAIDAL 104

[Close]

BLAST of CsGy1G012530 vs. TrEMBL
Match: tr|A0A0A0LUP1|A0A0A0LUP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.5e-81
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60
           MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD
Sbjct: 1   MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60

Query: 61  RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX 120
           RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 175
           XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
Sbjct: 121 XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 174

[Close]

BLAST of CsGy1G012530 vs. TrEMBL
Match: tr|A0A1S3B7T4|A0A1S3B7T4_CUCME (transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 7.7e-67
Identity = 135/174 (77.59%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 1   MGSLHDHDKNTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60
           MGSL DHDK   KI RRNRRL S+  AGAG GKVYTSKGLRARRLRLSAPTAIKFYDLQD
Sbjct: 1   MGSLDDHDKKKAKIGRRNRRLCSS--AGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQD 60

Query: 61  RLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFXXXXXXXXXXXXXXXXXXX 120
           RLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ F                   
Sbjct: 61  RLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIF-------SLPVPSSSSSSQ 120

Query: 121 XXSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE 175
             SYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Sbjct: 121 FQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE 165

[Close]

BLAST of CsGy1G012530 vs. TrEMBL
Match: tr|M5WPC7|M5WPC7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G057100 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR-PLQT 92
           KVYTSKG R RR RLSAPTAI+FYD+QDRLG  RP++AIDWL+  AK+AI+ALS   L  
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESELPG 177

Query: 93  EDNDC 97
           ++ DC
Sbjct: 178 KEYDC 182

[Close]

BLAST of CsGy1G012530 vs. TrEMBL
Match: tr|A0A0A0KF06|A0A0A0KF06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G156050 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.7e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 33  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPL 90
           KVYTS+GLR RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AKSAID LS  L
Sbjct: 52  KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADL 108

[Close]

BLAST of CsGy1G012530 vs. TrEMBL
Match: tr|D6MK40|D6MK40_9ASPA (Transcription factor (Fragment) OS=Lycoris longituba OX=272140 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.7e-13
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 33 KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTE 92
          KV T+KGLR RR+RLSA TAI+FYD+QDRLGC RP++A+DWL+ NAK+AID L      E
Sbjct: 20 KVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGCDRPSKAVDWLIKNAKAAIDQLDELPPWE 79

Query: 93 DN 95
           N
Sbjct: 80 PN 81

The following BLAST results are available for this feature:

BLAST of CsGy1G012530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653401.1	8.3e-81	100.00	PREDICTED: transcription factor PCF8-like [Cucumis sativus] >KGN64714.1 hypothet...	[more]
XP_008443015.1	1.2e-66	77.59	PREDICTED: transcription factor TCP10-like [Cucumis melo]	[more]
XP_023001760.1	2.0e-42	63.46	transcription factor PCF8-like [Cucurbita maxima]	[more]
XP_007214360.1	1.9e-13	66.15	transcription factor TCP4 [Prunus persica] >ONI10615.1 hypothetical protein PRUP...	[more]
XP_008225215.1	1.9e-13	66.15	PREDICTED: transcription factor TCP4-like [Prunus mume]	[more]

BLAST of CsGy1G012530 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53230.1	2.5e-15	67.27	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT2G31070.1	1.3e-14	67.92	TCP domain protein 10	[more]
AT3G15030.1	1.8e-13	62.96	TCP family transcription factor 4	[more]
AT5G60970.1	5.3e-13	54.93	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT3G02150.2	2.6e-12	62.26	plastid transcription factor 1	[more]

BLAST of CsGy1G012530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MAH8\|TCP3_ARATH	4.6e-14	67.27	Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1	[more]
sp\|A2WV68\|PCF7_ORYSI	2.3e-13	66.04	Transcription factor PCF7 OS=Oryza sativa subsp. indica OX=39946 GN=PCF7 PE=4 SV...	[more]
sp\|Q8LT05\|PCF7_ORYSJ	2.3e-13	66.04	Transcription factor PCF7 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF7 PE=2 ...	[more]
sp\|O82277\|TCP10_ARATH	2.3e-13	67.92	Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1	[more]
sp\|A2ZMR9\|PCF8_ORYSI	3.9e-13	58.57	Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV...	[more]

BLAST of CsGy1G012530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUP1\|A0A0A0LUP1_CUCSA	5.5e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV=1	[more]
tr\|A0A1S3B7T4\|A0A1S3B7T4_CUCME	7.7e-67	77.59	transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=...	[more]
tr\|M5WPC7\|M5WPC7_PRUPE	1.3e-13	66.15	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G057100 PE=4 SV=1	[more]
tr\|A0A0A0KF06\|A0A0A0KF06_CUCSA	3.7e-13	70.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G156050 PE=4 SV=1	[more]
tr\|D6MK40\|D6MK40_9ASPA	3.7e-13	64.52	Transcription factor (Fragment) OS=Lycoris longituba OX=272140 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017887	TF_TCP_subgr
IPR005333	Transcription_factor_TCP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012530.1	CsGy1G012530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 33..132 e-value: 4.8E-24 score: 85.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..117
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 33..123
None	No IPR available	PANTHER	PTHR31072:SF13	SUBFAMILY NOT NAMED	coord: 33..123
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 24..85 score: 21.581

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012530	Csa1G077150	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012530	MELO3C002636	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G012530	CSPI01G12480	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012530	CmaCh13G006160	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G012530	CmoCh13G006390	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G012530	Lsi02G007910	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G012530	MELO3C002636.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G012530	CsaV3_1G012680	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012530	CsaV3_4G033270	Cucumber (Chinese Long) v3	cgybcucB034
CsGy1G012530	Cla97C11G223670	Watermelon (97103) v2	cgybwmbB024
CsGy1G012530	Bhi08G001851	Wax gourd	cgybwgoB049
CsGy1G012530	Carg21524	Silver-seed gourd	carcgybB0936

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy1G012530	CsGy4G021440	Cucumber (Gy14) v2	cgybcgybB025

The following block(s) are covering this gene:

None