Carg21524 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21524
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor TCP4-like
Location	Cucurbita_argyrosperma_scaffold_146 : 384867 .. 385426 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCCAGGAAGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTACGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCCCAAATCCGCCATTGATGTCCTCTCTCGACCATTAGAAACAGAGGACGGCAAGCGTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGTTTTTGTTTTCTGGAAAATTTTGTTTTCAGTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGGAATTCTCCGGCATGCAGCCACCGTGTTCAAGTCAGAGCTATGCAACAACTGGGTTACCATCCTTTCCAACGTGGGAATAGCAACCGCCAAACGCCAGCCGCCGGATGATTTTCAAACGTGA

mRNA sequence

ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCCAGGAAGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTACGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCCCAAATCCGCCATTGATGTCCTCTCTCGACCATTAGAAACAGAGGACGGCAAGCGTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGTTTTTGTTTTCTGGAAAATTTTTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGGAATTCTCCGGCATGCAGCCACCGTGTTCAAGTCAGAGCTATGCAACAACTGGGTTACCATCCTTTCCAACGTGGGAATAGCAACCGCCAAACGCCAGCCGCCGGATGATTTTCAAACGTGA

Coding sequence (CDS)

ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCCAGGAAGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTACGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCCCAAATCCGCCATTGATGTCCTCTCTCGACCATTAGAAACAGAGGACGGCAAGCGTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGTTTTTGTTTTCTGGAAAATTTTTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGGAATTCTCCGGCATGCAGCCACCGTGTTCAAGTCAGAGCTATGCAACAACTGGGTTACCATCCTTTCCAACGTGGGAATAGCAACCGCCAAACGCCAGCCGCCGGATGATTTTCAAACGTGA

Protein sequence

MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHLKISSKMFDYCFCFLENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSELCNNWVTILSNVGIATAKRQPPDDFQT

Homology

[Close]

BLAST of Carg21524 vs. NCBI nr
Match: XP_023001760.1 (transcription factor PCF8-like [Cucurbita maxima])

HSP 1 Score: 146.7 bits (369), Expect = 7.5e-32
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PK 60
          MEERRLRSSAGSGKVYTSKGLRAR+LRLSAPTAIQFYDIQDRLGYNRPTEAIDWL    K
Sbjct: 1  MEERRLRSSAGSGKVYTSKGLRARRLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLLQNAK 60

Query: 61 SAIDVLSRPLETEDGKRSFPSI 80
          SAID LSRPLETEDGKRSFPS+
Sbjct: 61 SAIDALSRPLETEDGKRSFPSM 82

[Close]

BLAST of Carg21524 vs. NCBI nr
Match: XP_011653401.1 (PREDICTED: transcription factor PCF8-like [Cucumis sativus] >KGN64714.1 hypothetical protein Csa_1G077150 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 4   RRLRSS----AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---P 63
           RRL S+    AG GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    
Sbjct: 19  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNA 78

Query: 64  KSAIDVLSRPLETEDG---KRSF 77
           KSAID LSRPL+TED    K+SF
Sbjct: 79  KSAIDALSRPLQTEDNDCRKQSF 101

[Close]

BLAST of Carg21524 vs. NCBI nr
Match: XP_008443015.1 (PREDICTED: transcription factor TCP10-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 4  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKS 63
          RRL SS  AG+GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    K 
Sbjct: 19 RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKP 78

Query: 64 AIDVLSRPLETED 72
          AID LSRPL+TED
Sbjct: 79 AIDALSRPLQTED 91

[Close]

BLAST of Carg21524 vs. NCBI nr
Match: OEL30937.1 (Transcription factor PCF6 [Dichanthelium oligosanthes])

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 7   RSSAGS---GKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVL 66
           R+S G     KVYT+KG+R R++RLS  TAIQFYD+QDRLGY++P++AI+WL K+A D +
Sbjct: 61  RASGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAI 120

Query: 67  SRPLETEDGKRSFPS 79
            + L + D    FPS
Sbjct: 121 DK-LPSLDASAGFPS 134

[Close]

BLAST of Carg21524 vs. NCBI nr
Match: XP_008456416.2 (PREDICTED: transcription factor TCP4-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-12
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 14 KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPL 68
          KVYTS+GLR R++RLSA TAIQFYD+QDRLGY+RP++A+DWL    KSAID LS  L
Sbjct: 31 KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLSANL 87

[Close]

BLAST of Carg21524 vs. TAIR10
Match: AT2G31070.1 (TCP domain protein 10)

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-14
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETE 73
           KV+TSKG R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL    K+AID L     T 
Sbjct: 35  KVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLELGETTT 94

Query: 74  DGKRSFP 78
              R  P
Sbjct: 95  TTTRQEP 101

[Close]

BLAST of Carg21524 vs. TAIR10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 74.7 bits (182), Expect = 6.6e-14
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSR 66
           KV T+KG R R++RLSAPTAIQFYD+QDRLG++RP++A+DWL    KSAID L++
Sbjct: 55  KVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109

[Close]

BLAST of Carg21524 vs. TAIR10
Match: AT4G18390.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 4  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPK 63
          R +R S  SG      KV TSKG R R++RLS  TA+QFYD+QDRLGY++P++A++WL K
Sbjct: 32 RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 64 SAIDVLS 65
          +A D +S
Sbjct: 92 AAEDSIS 98

[Close]

BLAST of Carg21524 vs. TAIR10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 4   RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPK 63
           R +R S  SG      KV TSKGLR R++RLS  TAIQFYD+QDRLG+++P++A++WL  
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 64  SAIDVLS 65
           +A D ++
Sbjct: 100 AASDSIT 106

[Close]

BLAST of Carg21524 vs. TAIR10
Match: AT3G15030.1 (TCP family transcription factor 4)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 14 KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSA 60
          KV T+KG R R++RLSA TAIQFYD+QDRLG++RP++A+DWL K A
Sbjct: 51 KVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 96

[Close]

BLAST of Carg21524 vs. Swiss-Prot
Match: sp|O82277|TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.9e-13
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETE 73
           KV+TSKG R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL    K+AID L     T 
Sbjct: 35  KVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLELGETTT 94

Query: 74  DGKRSFP 78
              R  P
Sbjct: 95  TTTRQEP 101

[Close]

BLAST of Carg21524 vs. Swiss-Prot
Match: sp|Q9MAH8|TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSR 66
           KV T+KG R R++RLSAPTAIQFYD+QDRLG++RP++A+DWL    KSAID L++
Sbjct: 55  KVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109

[Close]

BLAST of Carg21524 vs. Swiss-Prot
Match: sp|A2WM14|PCF5_ORYSI (Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSR 66
           KV T++G R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL K+A D + +
Sbjct: 219 KVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDK 270

[Close]

BLAST of Carg21524 vs. Swiss-Prot
Match: sp|Q8LT07|PCF5_ORYSJ (Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSR 66
           KV T++G R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL K+A D + +
Sbjct: 95  KVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDK 146

[Close]

BLAST of Carg21524 vs. Swiss-Prot
Match: sp|A2WV68|PCF7_ORYSI (Transcription factor PCF7 OS=Oryza sativa subsp. indica OX=39946 GN=PCF7 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 4   RRLRSSAG----SGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---P 63
           R +RS+AG      KV T++GLR R++RL+A TAI+FYD+QDRLGY+RP++A+DWL    
Sbjct: 132 RIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNA 191

[Close]

BLAST of Carg21524 vs. TrEMBL
Match: tr|A0A0A0LUP1|A0A0A0LUP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 4   RRLRSS----AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---P 63
           RRL S+    AG GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    
Sbjct: 19  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNA 78

Query: 64  KSAIDVLSRPLETEDG---KRSF 77
           KSAID LSRPL+TED    K+SF
Sbjct: 79  KSAIDALSRPLQTEDNDCRKQSF 101

[Close]

BLAST of Carg21524 vs. TrEMBL
Match: tr|A0A1S3B7T4|A0A1S3B7T4_CUCME (transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 4  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKS 63
          RRL SS  AG+GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    K 
Sbjct: 19 RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKP 78

Query: 64 AIDVLSRPLETED 72
          AID LSRPL+TED
Sbjct: 79 AIDALSRPLQTED 91

[Close]

BLAST of Carg21524 vs. TrEMBL
Match: tr|A0A1E5W0K9|A0A1E5W0K9_9POAL (Transcription factor PCF6 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008045 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 7   RSSAGS---GKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVL 66
           R+S G     KVYT+KG+R R++RLS  TAIQFYD+QDRLGY++P++AI+WL K+A D +
Sbjct: 61  RASGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAI 120

Query: 67  SRPLETEDGKRSFPS 79
            + L + D    FPS
Sbjct: 121 DK-LPSLDASAGFPS 134

[Close]

BLAST of Carg21524 vs. TrEMBL
Match: tr|A0A1S3C3A0|A0A1S3C3A0_CUCME (transcription factor TCP4-like OS=Cucumis melo OX=3656 GN=LOC103496364 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 14 KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPL 68
          KVYTS+GLR R++RLSA TAIQFYD+QDRLGY+RP++A+DWL    KSAID LS  L
Sbjct: 31 KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLSANL 87

[Close]

BLAST of Carg21524 vs. TrEMBL
Match: tr|A0A1S6EMY0|A0A1S6EMY0_9ASPA (CINCINNATA-like protein 3 OS=Cattleya trianae OX=142280 GN=CIN-like3 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 14  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSRPLETEDGK 73
           KV+T KGLR R++RLS PTAIQFYD+QDRLGY++P++A+DWL K+A   ++   E +   
Sbjct: 54  KVWTVKGLRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAVDWLIKAADAAIADLPELDGAF 113

Query: 74  RSFPSILLPFRRRLL 89
              P+++LP R  LL
Sbjct: 114 PMPPAMILPGRANLL 128

The following BLAST results are available for this feature:

BLAST of Carg21524 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001760.1	7.5e-32	91.46	transcription factor PCF8-like [Cucurbita maxima]	[more]
XP_011653401.1	1.5e-19	72.29	PREDICTED: transcription factor PCF8-like [Cucumis sativus] >KGN64714.1 hypothet...	[more]
XP_008443015.1	1.9e-19	78.08	PREDICTED: transcription factor TCP10-like [Cucumis melo]	[more]
OEL30937.1	5.0e-12	53.33	Transcription factor PCF6 [Dichanthelium oligosanthes]	[more]
XP_008456416.2	6.6e-12	70.18	PREDICTED: transcription factor TCP4-like [Cucumis melo]	[more]

BLAST of Carg21524 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31070.1	3.8e-14	58.21	TCP domain protein 10	[more]
AT1G53230.1	6.6e-14	65.45	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT4G18390.1	1.6e-12	53.73	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]
AT1G30210.1	2.1e-12	52.24	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]
AT3G15030.1	3.6e-12	67.39	TCP family transcription factor 4	[more]

BLAST of Carg21524 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82277\|TCP10_ARATH	6.9e-13	58.21	Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1	[more]
sp\|Q9MAH8\|TCP3_ARATH	1.2e-12	65.45	Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1	[more]
sp\|A2WM14\|PCF5_ORYSI	4.5e-12	61.54	Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV...	[more]
sp\|Q8LT07\|PCF5_ORYSJ	4.5e-12	61.54	Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 ...	[more]
sp\|A2WV68\|PCF7_ORYSI	1.0e-11	56.72	Transcription factor PCF7 OS=Oryza sativa subsp. indica OX=39946 GN=PCF7 PE=4 SV...	[more]

BLAST of Carg21524 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUP1\|A0A0A0LUP1_CUCSA	9.7e-20	72.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077150 PE=4 SV=1	[more]
tr\|A0A1S3B7T4\|A0A1S3B7T4_CUCME	1.3e-19	78.08	transcription factor TCP10-like OS=Cucumis melo OX=3656 GN=LOC103486739 PE=4 SV=...	[more]
tr\|A0A1E5W0K9\|A0A1E5W0K9_9POAL	3.3e-12	53.33	Transcription factor PCF6 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_00080...	[more]
tr\|A0A1S3C3A0\|A0A1S3C3A0_CUCME	4.4e-12	70.18	transcription factor TCP4-like OS=Cucumis melo OX=3656 GN=LOC103496364 PE=4 SV=1	[more]
tr\|A0A1S6EMY0\|A0A1S6EMY0_9ASPA	4.4e-12	52.00	CINCINNATA-like protein 3 OS=Cattleya trianae OX=142280 GN=CIN-like3 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017887	TF_TCP_subgr
IPR005333	Transcription_factor_TCP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21524-RA	Carg21524-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 14..59 e-value: 6.2E-15 score: 56.0
None	No IPR available	PANTHER	PTHR31072:SF13	SUBFAMILY NOT NAMED	coord: 14..63
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 14..63
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 4..66 score: 14.907

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21524	Csa1G077150	Cucumber (Chinese Long) v2	carcuB0963
Carg21524	MELO3C002636	Melon (DHL92) v3.5.1	carmeB0930
Carg21524	CSPI01G12480	Wild cucumber (PI 183967)	carcpiB0986
Carg21524	Cucsa.127020	Cucumber (Gy14) v1	carcgyB1068
Carg21524	CmaCh13G006160	Cucurbita maxima (Rimu)	carcmaB1297
Carg21524	CmoCh13G006390	Cucurbita moschata (Rifu)	carcmoB1268
Carg21524	Lsi02G007910	Bottle gourd (USVL1VR-Ls)	carlsiB866
Carg21524	CsGy1G012530	Cucumber (Gy14) v2	carcgybB0936
Carg21524	MELO3C002636.2	Melon (DHL92) v3.6.1	carmedB0936
Carg21524	CsaV3_1G012680	Cucumber (Chinese Long) v3	carcucB0991
Carg21524	Bhi08G001851	Wax gourd	carwgoB1101

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21524	Carg19866	Silver-seed gourd	carcarB622

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21524	Silver-seed gourd	carcarB179
Carg21524	Silver-seed gourd	carcarB509
Carg21524	Cucumber (Gy14) v2	carcgybB0937
Carg21524	Cucumber (Gy14) v1	carcgyB1067
Carg21524	Cucurbita moschata (Rifu)	carcmoB1270
Carg21524	Cucurbita pepo (Zucchini)	carcpeB1314
Carg21524	Wild cucumber (PI 183967)	carcpiB0987
Carg21524	Cucumber (Chinese Long) v2	carcuB0964
Carg21524	Cucumber (Chinese Long) v3	carcucB0992
Carg21524	Bottle gourd (USVL1VR-Ls)	carlsiB865
Carg21524	Melon (DHL92) v3.5.1	carmeB0931
Carg21524	Melon (DHL92) v3.6.1	carmedB0937
Carg21524	Watermelon (Charleston Gray)	carwcgB0924
Carg21524	Watermelon (Charleston Gray)	carwcgB0926
Carg21524	Watermelon (97103) v1	carwmB0949
Carg21524	Watermelon (97103) v1	carwmB0950
Carg21524	Watermelon (97103) v2	carwmbB1000
Carg21524	Wax gourd	carwgoB1098