Cucsa.127020 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.127020
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription factor TCP4
Location	scaffold01017 : 841288 .. 841662 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGTTTGA

mRNA sequence

AACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCcttcctcatcgtcttcttcttcttcttcctcttcttcttcACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGTTTGA

Coding sequence (CDS)

AACACCACGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCCACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGTTTGA

Protein sequence

NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKV*

Homology

[Close]

BLAST of Cucsa.127020 vs. Swiss-Prot
Match: PCF8_ORYSJ (Transcription factor PCF8 OS=Oryza sativa subsp. japonica GN=PCF8 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 11  RLSSTADAGAGV----GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL 70
           R S  A A AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL+
Sbjct: 35  RTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLI 94

Query: 71  LNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSS------------SSSSSSSSSSSQFQS 120
             A +AIDAL         DC   SF+LP  +S            S+S +S SS     +
Sbjct: 95  RAAAAAIDAL------PSLDC---SFALPAAASSPPPPAADDAEVSTSETSKSSVLSLAN 150

[Close]

BLAST of Cucsa.127020 vs. Swiss-Prot
Match: PCF8_ORYSI (Transcription factor PCF8 OS=Oryza sativa subsp. indica GN=PCF8 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 11  RLSSTADAGAGV----GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL 70
           R S  A A AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL+
Sbjct: 35  RTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLI 94

Query: 71  LNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSS------------SSSSSSSSSSSQFQS 120
             A +AIDAL         DC   SF+LP  +S            S+S +S SS     +
Sbjct: 95  RAAAAAIDAL------PSLDC---SFALPAAASSPPPPAADDAEVSTSETSKSSVLSLAN 150

[Close]

BLAST of Cucsa.127020 vs. Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-14
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR 79
           KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Sbjct: 55  KVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109

[Close]

BLAST of Cucsa.127020 vs. Swiss-Prot
Match: TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL------- 83
           KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK+AID L       
Sbjct: 35  KVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLELGETTT 94

Query: 84  ---------SRP------LQTEDNDCR---------KQSFSLPVPSSSSSSSSSSSSSQF 125
                    ++P       Q E+ND           + +     P++++++    ++  F
Sbjct: 95  TTTRQEPVNTKPESPTLVFQRENNDQTQFVAANLDPEDAMKTFFPATTTTNGGGGTNINF 154

[Close]

BLAST of Cucsa.127020 vs. Swiss-Prot
Match: PCF7_ORYSI (Transcription factor PCF7 OS=Oryza sativa subsp. indica GN=PCF7 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-13
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL------- 83
           KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL+ NAK+AID L       
Sbjct: 146 KVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRAEAP 205

Query: 84  --------SRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSS 111
                    +P  TE  +     F      + +S++S+++ S
Sbjct: 206 PPPAAASTEQPEGTEQANSTSYGFGNTTGGTMTSAASAAAGS 247

[Close]

BLAST of Cucsa.127020 vs. TrEMBL
Match: A0A0A0LUP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077150 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTE 60
           NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTE
Sbjct: 10  NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTE 69

Query: 61  AIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNF 120
           AIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNF
Sbjct: 70  AIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNF 129

Query: 121 SQK 124
           SQK
Sbjct: 130 SQK 132

[Close]

BLAST of Cucsa.127020 vs. TrEMBL
Match: D6MK40_9ASPA (Transcription factor (Fragment) OS=Lycoris longituba PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTE 83
           KV T+KGLR RR+RLSA TAI+FYD+QDRLGC RP++A+DWL+ NAK+AID L      E
Sbjct: 20  KVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGCDRPSKAVDWLIKNAKAAIDQLDELPPWE 79

Query: 84  DN---DCRKQSFSLPVPSSSSSSSSSSSSSQFQSYP 117
            N   D +++  S+  P S+S+++   +SS   SYP
Sbjct: 80  PNSSADFQEKQTSVHEPISTSTATFPINSS---SYP 112

[Close]

BLAST of Cucsa.127020 vs. TrEMBL
Match: A0A061DQ62_THECC (TCP family transcription factor 4 isoform 1 OS=Theobroma cacao GN=TCM_003652 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-14
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR--PLQ 83
           KVYT KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AKSAID L+   P  
Sbjct: 30  KVYTVKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWH 89

Query: 84  TEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQ 123
              N C       P   S   + +  S S   +Y L+ F +
Sbjct: 90  PNTNTCTAVETDEPNAGSGEMAIAEQSESSGYNYQLRQFDE 130

[Close]

BLAST of Cucsa.127020 vs. TrEMBL
Match: A0A0A0KF06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G156050 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.6e-14
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPL-QT 83
           KVYTS+GLR RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AKSAID LS  L   
Sbjct: 52  KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADLPPC 111

Query: 84  EDNDCRKQSFSLPVPSSSS 102
             N C    FS+PV + ++
Sbjct: 112 NTNAC----FSVPVETQTN 126

[Close]

BLAST of Cucsa.127020 vs. TrEMBL
Match: M5WPC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024383mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR-PLQT 83
           KVYTSKG R RR RLSAPTAI+FYD+QDRLG  RP++AIDWL+  AK+AI+ALS   L  
Sbjct: 118 KVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESELPG 177

Query: 84  EDNDC 88
           ++ DC
Sbjct: 178 KEYDC 182

[Close]

BLAST of Cucsa.127020 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 77.8 bits (190), Expect = 5.3e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR 79
           KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Sbjct: 55  KVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109

[Close]

BLAST of Cucsa.127020 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL------- 83
           KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK+AID L       
Sbjct: 35  KVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLELGETTT 94

Query: 84  ---------SRP------LQTEDNDCR---------KQSFSLPVPSSSSSSSSSSSSSQF 125
                    ++P       Q E+ND           + +     P++++++    ++  F
Sbjct: 95  TTTRQEPVNTKPESPTLVFQRENNDQTQFVAANLDPEDAMKTFFPATTTTNGGGGTNINF 154

[Close]

BLAST of Cucsa.127020 vs. TAIR10
Match: AT3G15030.1 (AT3G15030.1 TCP family transcription factor 4)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1


Query: 8   RNRRLSSTADAGAGV-------------------GKVYTSKGLRARRLRLSAPTAIKFYD 67
           R+R  S  AD G G                     KV T+KG R RR+RLSA TAI+FYD
Sbjct: 16  RHRSTSDAADGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYD 75

Query: 68  LQDRLGCGRPTEAIDWLLLNAKSAIDALS 78
           +QDRLG  RP++A+DWL+  AK++ID L+
Sbjct: 76  VQDRLGFDRPSKAVDWLIKKAKTSIDELA 104

[Close]

BLAST of Cucsa.127020 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-13
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL----SRP 83
           KV TSKG R RR+RLS  TA++FYDLQDRLG  +P++A++WL+  A+ +I  L    +  
Sbjct: 48  KVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLNNTH 107

Query: 84  LQTEDNDCRKQSFSLPVPSSSSSSSSSSSS 110
             T+D + + Q+ +    +S S S+ SS+S
Sbjct: 108 FPTDDENHQNQTLTTVAANSLSKSACSSNS 137

[Close]

BLAST of Cucsa.127020 vs. TAIR10
Match: AT1G30210.1 (AT1G30210.1 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24)

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-13
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTE 83
           KV TSKGLR RR+RLS  TAI+FYDLQDRLG  +P++A++WL+  A  +I  L  PL   
Sbjct: 56  KVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL--PLLNT 115

Query: 84  DNDCRKQSFSLPVPSSSSSSSSSS 108
           + D   Q+ +    + SS +S SS
Sbjct: 116 NFDHLDQNQNQTKSACSSGTSESS 137

[Close]

BLAST of Cucsa.127020 vs. NCBI nr
Match: gi|778658856|ref|XP_011653401.1| (PREDICTED: transcription factor PCF8-like [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 7.8e-61
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTE 60
           NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTE
Sbjct: 10  NTTKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTE 69

Query: 61  AIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNF 120
           AIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNF
Sbjct: 70  AIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNF 129

Query: 121 SQK 124
           SQK
Sbjct: 130 SQK 132

[Close]

BLAST of Cucsa.127020 vs. NCBI nr
Match: gi|659068152|ref|XP_008443015.1| (PREDICTED: transcription factor TCP10-like [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-47
Identity = 104/120 (86.67%), Postives = 105/120 (87.50%), Query Frame = 1


Query: 4   KIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAID 63
           KI RRNRRL S+A  GAG GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAID
Sbjct: 13  KIGRRNRRLCSSA--GAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAID 72

Query: 64  WLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQK 123
           WLL NAK AIDALSRPLQTEDNDCRKQ FSLPVP       SSSSSSQFQSYPLQNFSQK
Sbjct: 73  WLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVP-------SSSSSSQFQSYPLQNFSQK 123

[Close]

BLAST of Cucsa.127020 vs. NCBI nr
Match: gi|1009106231|ref|XP_015873405.1| (PREDICTED: transcription factor TCP4-like [Ziziphus jujuba])

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR----- 83
           KV TSKG R RR+RLSA TAI+FYD+QDRLG  RP++AIDWL+  AK+AI+AL+      
Sbjct: 126 KVRTSKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAIDWLIDKAKAAIEALAEQRTEN 185

Query: 84  --PLQTEDNDCR-----KQSFSLPVPSSSSSSSSSSSSSQFQSYP 117
              L  +D+  R     KQS      + S S S+ SSS+QFQ YP
Sbjct: 186 LDSLNVDDSIPRTKHLGKQSIYQHPSNFSISGSTPSSSNQFQDYP 230

[Close]

BLAST of Cucsa.127020 vs. NCBI nr
Match: gi|590714883|ref|XP_007050038.1| (TCP family transcription factor 4 isoform 1 [Theobroma cacao])

HSP 1 Score: 85.9 bits (211), Expect = 5.5e-14
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR--PLQ 83
           KVYT KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AKSAID L+   P  
Sbjct: 30  KVYTVKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWH 89

Query: 84  TEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQ 123
              N C       P   S   + +  S S   +Y L+ F +
Sbjct: 90  PNTNTCTAVETDEPNAGSGEMAIAEQSESSGYNYQLRQFDE 130

[Close]

BLAST of Cucsa.127020 vs. NCBI nr
Match: gi|449463126|ref|XP_004149285.1| (PREDICTED: uncharacterized protein LOC101204399 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 24  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPL-QT 83
           KVYTS+GLR RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AKSAID LS  L   
Sbjct: 31  KVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADLPPC 90

Query: 84  EDNDCRKQSFSLPVPSSSS 102
             N C    FS+PV + ++
Sbjct: 91  NTNAC----FSVPVETQTN 105

The following BLAST results are available for this feature:

BLAST of Cucsa.127020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PCF8_ORYSJ	2.5e-14	44.00	Transcription factor PCF8 OS=Oryza sativa subsp. japonica GN=PCF8 PE=2 SV=1	[more]
PCF8_ORYSI	2.5e-14	44.00	Transcription factor PCF8 OS=Oryza sativa subsp. indica GN=PCF8 PE=3 SV=1	[more]
TCP3_ARATH	9.4e-14	67.27	Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1	[more]
TCP10_ARATH	2.1e-13	36.36	Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1	[more]
PCF7_ORYSI	3.6e-13	41.18	Transcription factor PCF7 OS=Oryza sativa subsp. indica GN=PCF7 PE=3 SV=1	[more]

BLAST of Cucsa.127020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUP1_CUCSA	5.5e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077150 PE=4 SV=1	[more]
D6MK40_9ASPA	5.9e-15	52.08	Transcription factor (Fragment) OS=Lycoris longituba PE=2 SV=1	[more]
A0A061DQ62_THECC	3.8e-14	46.53	TCP family transcription factor 4 isoform 1 OS=Theobroma cacao GN=TCM_003652 PE=...	[more]
A0A0A0KF06_CUCSA	8.6e-14	58.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G156050 PE=4 SV=1	[more]
M5WPC7_PRUPE	1.9e-13	66.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024383mg PE=4 SV=1	[more]

BLAST of Cucsa.127020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53230.1	5.3e-15	67.27	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT2G31070.1	1.2e-14	36.36	TCP domain protein 10	[more]
AT3G15030.1	1.7e-13	46.07	TCP family transcription factor 4	[more]
AT4G18390.1	2.9e-13	43.33	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]
AT1G30210.1	6.5e-13	48.81	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]

BLAST of Cucsa.127020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658856\|ref\|XP_011653401.1\|	7.8e-61	100.00	PREDICTED: transcription factor PCF8-like [Cucumis sativus]	[more]
gi\|659068152\|ref\|XP_008443015.1\|	4.9e-47	86.67	PREDICTED: transcription factor TCP10-like [Cucumis melo]	[more]
gi\|1009106231\|ref\|XP_015873405.1\|	2.5e-14	51.43	PREDICTED: transcription factor TCP4-like [Ziziphus jujuba]	[more]
gi\|590714883\|ref\|XP_007050038.1\|	5.5e-14	46.53	TCP family transcription factor 4 isoform 1 [Theobroma cacao]	[more]
gi\|449463126\|ref\|XP_004149285.1\|	1.2e-13	58.23	PREDICTED: uncharacterized protein LOC101204399 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0009617	response to bacterium
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0045962	positive regulation of development, heterochronic
biological_process	GO:0048481	plant ovule development
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.127020.1	Cucsa.127020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 24..119 score: 1.6
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 15..76 score: 21
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 24..76 score: 7.2
None	No IPR available	PANTHER	PTHR31072:SF3	TRANSCRIPTION FACTOR TCP10-RELATED	coord: 24..76 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.127020	Csa1G077150	Cucumber (Chinese Long) v2	cgycuB170
Cucsa.127020	MELO3C002636	Melon (DHL92) v3.5.1	cgymeB198
Cucsa.127020	CSPI01G12480	Wild cucumber (PI 183967)	cgycpiB172
Cucsa.127020	CmaCh13G006160	Cucurbita maxima (Rimu)	cgycmaB0336
Cucsa.127020	CmoCh09G008220	Cucurbita moschata (Rifu)	cgycmoB0329
Cucsa.127020	CmoCh13G006390	Cucurbita moschata (Rifu)	cgycmoB0330
Cucsa.127020	Lsi02G007910	Bottle gourd (USVL1VR-Ls)	cgylsiB194
Cucsa.127020	Cp4.1LG06g06630	Cucurbita pepo (Zucchini)	cgycpeB0330
Cucsa.127020	MELO3C002636.2	Melon (DHL92) v3.6.1	cgymedB197
Cucsa.127020	CsaV3_1G012680	Cucumber (Chinese Long) v3	cgycucB174
Cucsa.127020	Cla97C11G223670	Watermelon (97103) v2	cgywmbB199
Cucsa.127020	Bhi08G001851	Wax gourd	cgywgoB235
Cucsa.127020	Carg21524	Silver-seed gourd	carcgyB1068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None