CsaV3_1G006580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006580
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4237755 .. 4239701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAATAAGTAGAAATTAGAAGGGCTAAAATGAAAATTCACAAATGCAATGTGTAATGGAACTTTCCCACGAAATTGCATAAAAGACACCGAAATTTTAGTCATTTAAAAAAAGCGACCTAGGGGAGATGCCCTGCTTTAAGTCCACAAAAGAATAATCAAAGAATCACATCACACACTCTCCATCCTCTCTACGTCCTCTCCACCACCCAAATCCAACCCTACAAAACACACCCATCACCCCACGTGCATCCTCCTTTACCATCACGCGCGTGGTATTCAAATAATAAAGCTCACAAAAGTTTTCAATATCATGACGTATGATGGATGAAGCACAATGACGTCCGGTGAATCCAACGGTGGAAAACTATCGGCCACACAATAAAAATAACTCATTTAAGAAGCGGTGATCATCCTTATGATTCACCGCACAATAAAGAAAAACAAAGAAGATGGGGCCGCTAGCTCTTACAAATCTCTGATTTCGACGATTTTCATCAAGAAATGCTCTGATCTTTTGGATTGACGCTCCGATTTCAAGATTGATTGGAGGAGAGGAAGGGTTTGTGTCTGGGATCTGGGAATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGACGAGAGGAAGACGAAGAAGCTGTACTCTCGGAGTTGTTTTGTTTGTTCATCGTGATTTACGCTTAATTAACTTCCTAATCCTTTGTAAATATTAATCGTAAAATAATCATTTTAATTAATTGCCTTAATTTGTTTCCATACTTCTTAATTACCATATTCTCCTTCATGATTTTCTTATTGTTAAAACTCAAAAGAACACACACACATATGTATACACACACACACTTCATTCACTCATTCATTCATTTATTTAATTGTAATTAATGCATGCTGTTATATAGTTCAATGGAGATTGGTACAATTTTTTATTGTACAGAAGGTTTGAATTTTCTCACTGTTTGAATTTTTAGAAATGTTAGAACTTTGTTTTAGAACAATTATGAATATGGGACAAAGATTTGAAGTAGATAAGATGTTGTTTGAACTGTCAAACTGTATGCTATTATCAATTTAGACTCACATTTTGTAGGGTTTTTATTTTCTTTCTTGAAAGTGTATACTACAACAAAAGGGGGAGACTTAGAGAGGCAAAGTCATGTTAAAAGAAAGAAAGAAAAGGAAAACTCAAAGAGAAGAGACGAGAAACATATGCTCACAACAACGTGCATAAAATAAAGCAAAGAAAACGACAATTAGGGCAATGGGATAATATGAACGTCCCAAACTGAGAACTCAGATAGGACCTATTGTTTTATGATATCCACGAAAATCTTCACCAAAGGCAAACAAAAAGGGCATTTGACTGCACAAATTGAAAAAAAGAAAACGATGTAAGTCGGTATGAACCAAAAAGCTACGTTCCATATTAACACTTCCTTCACTTATACTCATAAGCTTAACATTCATACATTTACTAGAACACTTTCTTCACTCATATTCATAAGCTTAACGTTCATACATTTACTAGAACACTTCGTTCACTTATACTCATAAGCGAATCTCAGGCCGTATATGTGTTTTACGTATATGTGTTTTACTAGTGTTTTATTAGTGTTTTATTTTGTTAAATGATGTTGGAGACCAAAATTAGAGAGA

mRNA sequence

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Protein sequence

MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILRRMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Homology
[Close]
BLAST of CsaV3_1G006580 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_1G042280 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-18
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60
           MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR
Sbjct: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]
BLAST of CsaV3_1G006580 vs. TrEMBL
Match: tr|A0A0A0LVR0|A0A0A0LVR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60
           MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR
Sbjct: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006580 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64116.13.5e-18100.00hypothetical protein Csa_1G042280 [Cucumis sativus][more]
BLAST of CsaV3_1G006580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVR0|A0A0A0LVR0_CUCSA2.3e-18100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006580.1CsaV3_1G006580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006580CSPI01G06720Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006580Cucsa.121420Cucumber (Gy14) v1cgycucB163
CsaV3_1G006580CmaCh18G000370Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006580Cp4.1LG09g11430Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006580Cp4.1LG20g01140Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006580CsGy1G006450Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006580Cla018507Watermelon (97103) v1cucwmB070
CsaV3_1G006580MELO3C002084Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006580ClCG04G011170Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006580Lsi02G001770Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006580MELO3C002084.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006580Cla97C04G078030Watermelon (97103) v2cucwmbB054
CsaV3_1G006580Bhi08G001017Wax gourdcucwgoB031
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006580Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006580Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006580Bottle gourd (USVL1VR-Ls)cuclsiB063
CsaV3_1G006580Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006580Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006580Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006580Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006580Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006580Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006580Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006580Watermelon (97103) v1cucwmB043
CsaV3_1G006580Watermelon (97103) v1cucwmB107
CsaV3_1G006580Watermelon (97103) v2cucwmbB058
CsaV3_1G006580Watermelon (97103) v2cucwmbB078
CsaV3_1G006580Wax gourdcucwgoB014
CsaV3_1G006580Wax gourdcucwgoB077
CsaV3_1G006580Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006580Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006580Silver-seed gourdcarcucB0418
CsaV3_1G006580Silver-seed gourdcarcucB0495
CsaV3_1G006580Silver-seed gourdcarcucB0548
CsaV3_1G006580Silver-seed gourdcarcucB0630
CsaV3_1G006580Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006580Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006580Cucumber (Gy14) v1cgycucB315
CsaV3_1G006580Cucumber (Gy14) v1cgycucB434
CsaV3_1G006580Cucurbita maxima (Rimu)cmacucB0076
CsaV3_1G006580Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006580Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006580Cucurbita maxima (Rimu)cmacucB0485
CsaV3_1G006580Cucurbita moschata (Rifu)cmocucB0063
CsaV3_1G006580Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006580Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006580Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006580Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006580Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006580Cucurbita pepo (Zucchini)cpecucB0436
CsaV3_1G006580Cucurbita pepo (Zucchini)cpecucB0816