CSPI01G06720 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G06720
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 4254345 .. 4255970 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTATCGGCCACACAATAAAAATAACTCATTTAAGAAGCGGTGATCATCCTTATGATTCACCGCACAATAAAGAAAAACAAAGAAGATGGGGCCGCTAGCTCTTACAAATCTCTGATTTCGACGATTTTCATCAAGAAATGCTCTGATCTTTTGGATTGACGCTCCGATTTCAAGATTGATTGGAGGAGAGGAAGGGTTTGTGTCTGGGATCTGGGGATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGACGAGAGGAAGACGAAGAAGCTGTACTCTCGGAGTTGTTTTGTTTGTTCATCGTGATTTACGCTTAATTAACTTCCTAATCCTTTGTAAATATTAATCGTAAAATAATCATTTTAATTAATTGCCTTAATTTGTTTCCATACTTCTTAATTACCATATTCTCCTTCATGATTTTCTTATTGTTAAAACTCAAAAGAACACACACACATATGTATACACACACACACACTTCATTCACTCATTCATTCATTTATTTAATTGTAATTAATGCATGCTGTTATATAGTTCAATGGAGATTGGTACAATTTTTTATTGTACAGAAGGTTTGAATTTTCTCACTGTTTGAATTTTTAGAAATGTTAGAACTTTGTTTTAGAACAATTATGAATATGGGACAAAGATTTGAAGTAGATAAGATGTTATTTGAACTGTCAAACTGTATGCTATTATCAATTTAGACTCACATTTTGTAGGGTTTTTATTTTCTTTCTTGAAAGTGTATACTACAACAAAAGGGGGAGACTTAGAGAGGCAAAGTCATGTTAAAAGAAAGAAAGAAAAGGAAAACTCAAAGAGAAGAGACGAGAAACATATGCACACAACAACGTGCATAAAATAAAGCAAAGAAAACGACAATTAGGGCAATGGGATAATATGAACGTCCCAAACTGAGAACTCAGATAGGACCTATTGTTTTATGATATCCACGAAAATCTTCACCAAAGGCAAACAAAAAGGGCATTTGACTGCACAAATTGAAAAAAAGAAAACGATGTAAGTCGGTATGAACCAAAAAGCTACGTTCCATATTAACACTTCCTTCACTTATACTCATAAGCTTAACATTCATACATTTACTAGAACACTTTCTTCACTCATATTCATAAGCTTAACGTTCATACATTTACTAGAACACTTCGTTCACTTATACTCATAAGCGAATCTCAGGCCGTATATGTGTTTTACTAGTGTTTTATATGTGTTTTACGTATATGTGTTTTATTAGTGTTTTATTTTGTTAAATGATGTTGGAGACCAAAATTAGAGAGATTAAGAATGCTAGAACATTATTCCTTCTCCCC

mRNA sequence

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA
Homology
[Close]
BLAST of CSPI01G06720 vs. TrEMBL
Match: A0A0A0LVR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.3e-43
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60
           MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]
BLAST of CSPI01G06720 vs. NCBI nr
Match: gi|700209020|gb|KGN64116.1| (hypothetical protein Csa_1G042280 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 6.2e-43
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60
           MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:
BLAST of CSPI01G06720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G06720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVR0_CUCSA4.3e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042280 PE=4 SV=1[more]
BLAST of CSPI01G06720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G06720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209020|gb|KGN64116.1|6.2e-43100.00hypothetical protein Csa_1G042280 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G06720.1CSPI01G06720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 18..42
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G06720Cla018507Watermelon (97103) v1cpiwmB066
CSPI01G06720Csa1G042280Cucumber (Chinese Long) v2cpicuB000
CSPI01G06720MELO3C002084Melon (DHL92) v3.5.1cpimeB024
CSPI01G06720ClCG04G011170Watermelon (Charleston Gray)cpiwcgB059
CSPI01G06720Lsi02G001770Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G06720MELO3C002084.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G06720CsaV3_1G006580Cucumber (Chinese Long) v3cpicucB001
CSPI01G06720Cla97C04G078030Watermelon (97103) v2cpiwmbB055
CSPI01G06720Bhi08G001017Wax gourdcpiwgoB028
CSPI01G06720Cucsa.121420Cucumber (Gy14) v1cgycpiB160
CSPI01G06720Cp4.1LG20g01140Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G06720CsGy1G006450Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G06720Melon (DHL92) v3.6.1cpimedB004
CSPI01G06720Melon (DHL92) v3.6.1cpimedB052
CSPI01G06720Cucumber (Gy14) v2cgybcpiB003
CSPI01G06720Cucumber (Gy14) v2cgybcpiB200
CSPI01G06720Silver-seed gourdcarcpiB0418
CSPI01G06720Silver-seed gourdcarcpiB0498
CSPI01G06720Silver-seed gourdcarcpiB0549
CSPI01G06720Silver-seed gourdcarcpiB0629
CSPI01G06720Cucumber (Chinese Long) v3cpicucB002
CSPI01G06720Cucumber (Chinese Long) v3cpicucB042
CSPI01G06720Watermelon (97103) v2cpiwmbB062
CSPI01G06720Watermelon (97103) v2cpiwmbB081
CSPI01G06720Wax gourdcpiwgoB014
CSPI01G06720Wax gourdcpiwgoB073
CSPI01G06720Cucurbita maxima (Rimu)cmacpiB394
CSPI01G06720Wild cucumber (PI 183967)cpicpiB001
CSPI01G06720Wild cucumber (PI 183967)cpicpiB028
CSPI01G06720Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G06720Cucumber (Gy14) v1cgycpiB426
CSPI01G06720Cucurbita maxima (Rimu)cmacpiB067
CSPI01G06720Cucurbita maxima (Rimu)cmacpiB087
CSPI01G06720Cucurbita maxima (Rimu)cmacpiB218
CSPI01G06720Cucurbita moschata (Rifu)cmocpiB060
CSPI01G06720Cucurbita moschata (Rifu)cmocpiB080
CSPI01G06720Cucurbita moschata (Rifu)cmocpiB204
CSPI01G06720Cucurbita moschata (Rifu)cmocpiB383
CSPI01G06720Cucurbita moschata (Rifu)cmocpiB391
CSPI01G06720Cucumber (Chinese Long) v2cpicuB003
CSPI01G06720Cucumber (Chinese Long) v2cpicuB040
CSPI01G06720Melon (DHL92) v3.5.1cpimeB007
CSPI01G06720Melon (DHL92) v3.5.1cpimeB058
CSPI01G06720Watermelon (Charleston Gray)cpiwcgB065
CSPI01G06720Watermelon (Charleston Gray)cpiwcgB085
CSPI01G06720Watermelon (97103) v1cpiwmB038
CSPI01G06720Watermelon (97103) v1cpiwmB101
CSPI01G06720Cucurbita pepo (Zucchini)cpecpiB018
CSPI01G06720Cucurbita pepo (Zucchini)cpecpiB358
CSPI01G06720Cucurbita pepo (Zucchini)cpecpiB658
CSPI01G06720Bottle gourd (USVL1VR-Ls)cpilsiB057
CSPI01G06720Bottle gourd (USVL1VR-Ls)cpilsiB072