CsGy1G006450 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G006450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 4210903 .. 4211217 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

mRNA sequence

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Protein sequence

MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILRRMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN

Homology

[Close]

BLAST of CsGy1G006450 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_1G042280 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 6.0e-18
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60
           MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR
Sbjct: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]

BLAST of CsGy1G006450 vs. TrEMBL
Match: tr|A0A0A0LVR0|A0A0A0LVR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.9e-18
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60
           MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR
Sbjct: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:

BLAST of CsGy1G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64116.1	6.0e-18	100.00	hypothetical protein Csa_1G042280 [Cucumis sativus]	[more]

BLAST of CsGy1G006450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G006450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G006450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVR0\|A0A0A0LVR0_CUCSA	3.9e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G006450.1	CsGy1G006450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G006450	Cla018507	Watermelon (97103) v1	cgybwmB064
CsGy1G006450	Csa1G042280	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G006450	MELO3C002084	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G006450	ClCG04G011170	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G006450	CSPI01G06720	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G006450	Lsi02G001770	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G006450	Cp4.1LG20g01140	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G006450	MELO3C002084.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G006450	CsaV3_1G006580	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G006450	Cla97C04G078030	Watermelon (97103) v2	cgybwmbB053
CsGy1G006450	Bhi08G001017	Wax gourd	cgybwgoB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G006450	Cucumber (Gy14) v2	cgybcgybB002
CsGy1G006450	Cucumber (Gy14) v2	cgybcgybB027
CsGy1G006450	Cucurbita maxima (Rimu)	cgybcmaB023
CsGy1G006450	Cucurbita maxima (Rimu)	cgybcmaB030
CsGy1G006450	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G006450	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G006450	Cucurbita moschata (Rifu)	cgybcmoB024
CsGy1G006450	Cucurbita moschata (Rifu)	cgybcmoB029
CsGy1G006450	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G006450	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G006450	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G006450	Cucurbita pepo (Zucchini)	cgybcpeB046
CsGy1G006450	Cucurbita pepo (Zucchini)	cgybcpeB128
CsGy1G006450	Cucumber (Chinese Long) v2	cgybcuB005
CsGy1G006450	Bottle gourd (USVL1VR-Ls)	cgyblsiB069
CsGy1G006450	Melon (DHL92) v3.5.1	cgybmeB052
CsGy1G006450	Melon (DHL92) v3.6.1	cgybmedB046
CsGy1G006450	Watermelon (Charleston Gray)	cgybwcgB080
CsGy1G006450	Watermelon (97103) v1	cgybwmB096
CsGy1G006450	Wild cucumber (PI 183967)	cgybcpiB005
CsGy1G006450	Silver-seed gourd	carcgybB0393
CsGy1G006450	Silver-seed gourd	carcgybB0469
CsGy1G006450	Silver-seed gourd	carcgybB0518
CsGy1G006450	Silver-seed gourd	carcgybB0595
CsGy1G006450	Cucumber (Chinese Long) v3	cgybcucB003
CsGy1G006450	Watermelon (97103) v2	cgybwmbB078
CsGy1G006450	Wax gourd	cgybwgoB013