CsGy1G006450.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G006450.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 4210903 .. 4211217 (-)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

mRNA sequence

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Protein sequence

MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILRRMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN

Homology

[Close]

BLAST of CsGy1G006450.1 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_1G042280 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 6.0e-18
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60
           MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR
Sbjct: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]

BLAST of CsGy1G006450.1 vs. TrEMBL
Match: tr|A0A0A0LVR0|A0A0A0LVR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.9e-18
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60
           MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR
Sbjct: 1   MEREKRKEMSEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:

BLAST of CsGy1G006450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64116.1	6.0e-18	100.00	hypothetical protein Csa_1G042280 [Cucumis sativus]	[more]

BLAST of CsGy1G006450.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G006450.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G006450.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVR0\|A0A0A0LVR0_CUCSA	3.9e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G006450	CsGy1G006450	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G006450.1.CDS.1	CsGy1G006450.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G006450.1.exon.1	CsGy1G006450.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G006450.1	CsGy1G006450.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22