Cla97C04G078030 (gene) Watermelon (97103) v2

Overview
NameCla97C04G078030
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr04 : 25559104 .. 25559400 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAGAAAAAAGGAAGGCAATGTCGCCGGAGGAGAACGGCGGAGTGGTTGAAGAGACGAAGAAGAAGAAGAAGAAGAAAGTGAGGAAGGAGGAGAAAGAGGCGGCGGAGGTGGAGGAGCCGACAACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGGTACTTGAAAGGGAGGAGGCTGCCGGAGAGAAAAACAACGGCGGAGACGGCGGCGATTGAGGAACATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTTCTAATTAA

mRNA sequence

ATGGAGAGAGAAAAAAGGAAGGCAATGTCGCCGGAGGAGAACGGCGGAGTGGTTGAAGAGACGAAGAAGAAGAAGAAGAAGAAAGTGAGGAAGGAGGAGAAAGAGGCGGCGGAGGTGGAGGAGCCGACAACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGGTACTTGAAAGGGAGGAGGCTGCCGGAGAGAAAAACAACGGCGGAGACGGCGGCGATTGAGGAACATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTTCTAATTAA

Coding sequence (CDS)

ATGGAGAGAGAAAAAAGGAAGGCAATGTCGCCGGAGGAGAACGGCGGAGTGGTTGAAGAGACGAAGAAGAAGAAGAAGAAGAAAGTGAGGAAGGAGGAGAAAGAGGCGGCGGAGGTGGAGGAGCCGACAACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGGTACTTGAAAGGGAGGAGGCTGCCGGAGAGAAAAACAACGGCGGAGACGGCGGCGATTGAGGAACATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTTCTAATTAA

Protein sequence

MEREKRKAMSPEENGGVVEETKKKKKKKVRKEEKEAAEVEEPTTEEVEEFYAILRRMDVALRYLKGRRLPERKTTAETAAIEEHKELNLNEVPSDSSN
Homology
[Close]
BLAST of Cla97C04G078030 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_1G042280 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-09
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 52  AILRRMDVALRYLKGRRLPERKTT-AETAAIEEHKELNLNEVPSDSSN 99
           AILRRMD ALRYLKG+R+PER+TT  ETA   E+KELNLNEVPSDSSN
Sbjct: 57  AILRRMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]
BLAST of Cla97C04G078030 vs. TrEMBL
Match: tr|A0A0A0LVR0|A0A0A0LVR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 52  AILRRMDVALRYLKGRRLPERKTT-AETAAIEEHKELNLNEVPSDSSN 99
           AILRRMD ALRYLKG+R+PER+TT  ETA   E+KELNLNEVPSDSSN
Sbjct: 57  AILRRMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:
BLAST of Cla97C04G078030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64116.16.2e-0979.17hypothetical protein Csa_1G042280 [Cucumis sativus][more]
BLAST of Cla97C04G078030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVR0|A0A0A0LVR0_CUCSA4.1e-0979.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1[more]
BLAST of Cla97C04G078030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C04G078030 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010112regulation of systemic acquired resistance
Vocabulary: INTERPRO
TermDefinition
IPR034577NIMIN-2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006952 defense response
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010112 regulation of systemic acquired resistance
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G078030.1Cla97C04G078030.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..98
IPR034577Protein NIM1-INTERACTING 2PANTHERPTHR35735FAMILY NOT NAMEDcoord: 1..86

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C04G078030Cla018507Watermelon (97103) v1wmwmbB291
Cla97C04G078030Csa1G042280Cucumber (Chinese Long) v2cuwmbB054
Cla97C04G078030MELO3C002084Melon (DHL92) v3.5.1mewmbB159
Cla97C04G078030ClCG04G011170Watermelon (Charleston Gray)wcgwmbB200
Cla97C04G078030CSPI01G06720Wild cucumber (PI 183967)cpiwmbB055
Cla97C04G078030Cucsa.121420Cucumber (Gy14) v1cgywmbB186
Cla97C04G078030Lsi02G001770Bottle gourd (USVL1VR-Ls)lsiwmbB184
Cla97C04G078030CsGy1G006450Cucumber (Gy14) v2cgybwmbB053
Cla97C04G078030MELO3C002084.2Melon (DHL92) v3.6.1medwmbB147
Cla97C04G078030CsaV3_1G006580Cucumber (Chinese Long) v3cucwmbB054
Cla97C04G078030Bhi08G001017Wax gourdwgowmbB490
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C04G078030Wax gourdwgowmbB177
Cla97C04G078030Wax gourdwgowmbB529
Cla97C04G078030Watermelon (97103) v2wmbwmbB124
Cla97C04G078030Watermelon (97103) v2wmbwmbB125
Cla97C04G078030Silver-seed gourdcarwmbB0409
Cla97C04G078030Silver-seed gourdcarwmbB0484
Cla97C04G078030Silver-seed gourdcarwmbB0536
Cla97C04G078030Silver-seed gourdcarwmbB0621
Cla97C04G078030Cucumber (Gy14) v2cgybwmbB054
Cla97C04G078030Cucumber (Gy14) v2cgybwmbB359
Cla97C04G078030Cucumber (Gy14) v1cgywmbB365
Cla97C04G078030Cucumber (Gy14) v1cgywmbB497
Cla97C04G078030Cucurbita maxima (Rimu)cmawmbB069
Cla97C04G078030Cucurbita maxima (Rimu)cmawmbB122
Cla97C04G078030Cucurbita maxima (Rimu)cmawmbB233
Cla97C04G078030Cucurbita maxima (Rimu)cmawmbB421
Cla97C04G078030Cucurbita maxima (Rimu)cmawmbB422
Cla97C04G078030Cucurbita moschata (Rifu)cmowmbB058
Cla97C04G078030Cucurbita moschata (Rifu)cmowmbB107
Cla97C04G078030Cucurbita moschata (Rifu)cmowmbB216
Cla97C04G078030Cucurbita moschata (Rifu)cmowmbB399
Cla97C04G078030Cucurbita moschata (Rifu)cmowmbB402
Cla97C04G078030Wild cucumber (PI 183967)cpiwmbB057
Cla97C04G078030Wild cucumber (PI 183967)cpiwmbB396
Cla97C04G078030Cucumber (Chinese Long) v3cucwmbB055
Cla97C04G078030Cucumber (Chinese Long) v3cucwmbB392
Cla97C04G078030Cucumber (Chinese Long) v2cuwmbB055
Cla97C04G078030Cucumber (Chinese Long) v2cuwmbB377
Cla97C04G078030Bottle gourd (USVL1VR-Ls)lsiwmbB282
Cla97C04G078030Bottle gourd (USVL1VR-Ls)lsiwmbB368
Cla97C04G078030Melon (DHL92) v3.6.1medwmbB054
Cla97C04G078030Melon (DHL92) v3.6.1medwmbB239
Cla97C04G078030Melon (DHL92) v3.5.1mewmbB057
Cla97C04G078030Melon (DHL92) v3.5.1mewmbB253
Cla97C04G078030Watermelon (Charleston Gray)wcgwmbB228
Cla97C04G078030Watermelon (Charleston Gray)wcgwmbB263
Cla97C04G078030Watermelon (97103) v1wmwmbB205
Cla97C04G078030Watermelon (97103) v1wmwmbB397