CmaCh18G000370 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G000370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr18 : 149717 .. 150013 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAGAAAAGAGGAAGAAAATATCGGAGGGGGAGAGCGGCGGAGTGGTCGTAGAGACGAAGAAGAAGACGAGAAAGGAGGAGAGAGAGACGGCGCCGGCGGAGGTGGAGGTGGAGGTGGAGGAGCCGACGACGGAGGCGGTGGAGGAGTTCTATGCCATTTTGAGGAGGATGGATGTGGCTTTACGGTACTTGAAAGAGGTACAGAAGAGGCCGACGGTTAGAATCAGACAGGTCGAGGAACATAAGGAACTCAATTTAAATGAAGTGCCTCCAGCAGATTCTACTGATTAG

mRNA sequence

ATGGAGAGAGAAAAGAGGAAGAAAATATCGGAGGGGGAGAGCGGCGGAGTGGTCGTAGAGACGAAGAAGAAGACGAGAAAGGAGGAGAGAGAGACGGCGCCGGCGGAGGTGGAGGTGGAGGTGGAGGAGCCGACGACGGAGGCGGTGGAGGAGTTCTATGCCATTTTGAGGAGGATGGATGTGGCTTTACGGTACTTGAAAGAGGTACAGAAGAGGCCGACGGTTAGAATCAGACAGGTCGAGGAACATAAGGAACTCAATTTAAATGAAGTGCCTCCAGCAGATTCTACTGATTAG

Coding sequence (CDS)

ATGGAGAGAGAAAAGAGGAAGAAAATATCGGAGGGGGAGAGCGGCGGAGTGGTCGTAGAGACGAAGAAGAAGACGAGAAAGGAGGAGAGAGAGACGGCGCCGGCGGAGGTGGAGGTGGAGGTGGAGGAGCCGACGACGGAGGCGGTGGAGGAGTTCTATGCCATTTTGAGGAGGATGGATGTGGCTTTACGGTACTTGAAAGAGGTACAGAAGAGGCCGACGGTTAGAATCAGACAGGTCGAGGAACATAAGGAACTCAATTTAAATGAAGTGCCTCCAGCAGATTCTACTGATTAG

Protein sequence

MEREKRKKISEGESGGVVVETKKKTRKEERETAPAEVEVEVEEPTTEAVEEFYAILRRMDVALRYLKEVQKRPTVRIRQVEEHKELNLNEVPPADSTD
Homology
[Close]
BLAST of CmaCh18G000370 vs. TrEMBL
Match: A0A0A0LVR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-14
Identity = 62/103 (60.19%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 1   MEREKRKKISEGESGGVVVETK---KKTRKEERETAPAEVEVEVEEPTTEAVEEFYAILR 60
           MEREKRK++SEGE GGVV E K   KK  K+E E   A    EVEEP+TE VEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDVALRYL--KEVQKRPTV--RIRQVEEHKELNLNEVPPADS 97
           RMD ALRYL  K V +R T         E+KELNLNEVP   S
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSS 103

[Close]
BLAST of CmaCh18G000370 vs. NCBI nr
Match: gi|700209020|gb|KGN64116.1| (hypothetical protein Csa_1G042280 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-14
Identity = 62/103 (60.19%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 1   MEREKRKKISEGESGGVVVETK---KKTRKEERETAPAEVEVEVEEPTTEAVEEFYAILR 60
           MEREKRK++SEGE GGVV E K   KK  K+E E   A    EVEEP+TE VEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDVALRYL--KEVQKRPTV--RIRQVEEHKELNLNEVPPADS 97
           RMD ALRYL  K V +R T         E+KELNLNEVP   S
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSS 103

The following BLAST results are available for this feature:
BLAST of CmaCh18G000370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh18G000370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVR0_CUCSA6.7e-1460.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042280 PE=4 SV=1[more]
BLAST of CmaCh18G000370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh18G000370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209020|gb|KGN64116.1|9.6e-1460.19hypothetical protein Csa_1G042280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G000370.1CmaCh18G000370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G000370Cp4.1LG09g11430Cucurbita pepo (Zucchini)cmacpeB416
CmaCh18G000370CsaV3_1G006580Cucumber (Chinese Long) v3cmacucB0464
CmaCh18G000370Bhi08G001017Wax gourdcmawgoB0520
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G000370Cucurbita maxima (Rimu)cmacmaB100
CmaCh18G000370Cucurbita maxima (Rimu)cmacmaB139
CmaCh18G000370Cucurbita maxima (Rimu)cmacmaB217
CmaCh18G000370Wild cucumber (PI 183967)cmacpiB394
CmaCh18G000370Cucumber (Gy14) v1cgycmaB0587
CmaCh18G000370Cucurbita moschata (Rifu)cmacmoB399
CmaCh18G000370Cucurbita moschata (Rifu)cmacmoB389
CmaCh18G000370Cucurbita moschata (Rifu)cmacmoB408
CmaCh18G000370Wild cucumber (PI 183967)cmacpiB397
CmaCh18G000370Cucumber (Chinese Long) v2cmacuB390
CmaCh18G000370Cucumber (Chinese Long) v2cmacuB393
CmaCh18G000370Melon (DHL92) v3.5.1cmameB365
CmaCh18G000370Melon (DHL92) v3.5.1cmameB372
CmaCh18G000370Watermelon (Charleston Gray)cmawcgB363
CmaCh18G000370Watermelon (Charleston Gray)cmawcgB371
CmaCh18G000370Watermelon (97103) v1cmawmB396
CmaCh18G000370Watermelon (97103) v1cmawmB404
CmaCh18G000370Cucurbita pepo (Zucchini)cmacpeB439
CmaCh18G000370Cucurbita pepo (Zucchini)cmacpeB452
CmaCh18G000370Bottle gourd (USVL1VR-Ls)cmalsiB370
CmaCh18G000370Bottle gourd (USVL1VR-Ls)cmalsiB391
CmaCh18G000370Cucumber (Gy14) v2cgybcmaB085
CmaCh18G000370Cucumber (Gy14) v2cgybcmaB088
CmaCh18G000370Melon (DHL92) v3.6.1cmamedB424
CmaCh18G000370Melon (DHL92) v3.6.1cmamedB429
CmaCh18G000370Silver-seed gourdcarcmaB0541
CmaCh18G000370Silver-seed gourdcarcmaB0722
CmaCh18G000370Silver-seed gourdcarcmaB0834
CmaCh18G000370Cucumber (Chinese Long) v3cmacucB0466
CmaCh18G000370Watermelon (97103) v2cmawmbB422
CmaCh18G000370Watermelon (97103) v2cmawmbB432