Csa7G452980 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G452980
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 19142240 .. 19142925 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGCCTAATGTCTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACAAGGCTAGGGTCAGTCATCAACCCATTACAATAACAAAACGAACCCAAACCCTTATTTGTCCTAGCTTATTTTAATATTTTTTTTCTTTTTTCTTTTTTGGGTTTTGGTTTTTTCAGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAGCACAGTGAAGCTACTCTTGTATTGATTGATGTATGTGTTTCTCTTACCAACGATATATCTAATCTAATTGAAATATTATTGTTTTCTTATTTATGGTACGTAGGGTTTGGAAATGTTGAAATTATTTTTGTAATGTTGGAGAGCATTAGTCATATATATGTGGTTTTACGTTTTTAGATATGATTTTCTTAGAAGATAAAGATATATGGATACATACAATGTTAATAGAAATATAGTAATCGTTTAATTTGAATGTGTATAATTAATTTTGTGTGTTATTGAGAGGTTAGATGGTAGAAAGGTTGAGACCGATGAAGTGTATGTTTGGAGGAGGAGGAGGAGGAGGAGGATCATTGAGAGAATTTGAGGAAGAAAGAAAAAGATGTCAGTGCTCTTACGTTTCTACTGATCAATCCCCAAATAAAGTGCTGGAGTTGCTCAAGGAACCCCTTTCAGCTCCATTTTGA

mRNA sequence

ATGGCTAAGCCTAATGTCTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACAAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAGCACAGTGAAGCTACTCTTGTATTGATTGATATGGTAGAAAGGTTGAGACCGATGAAGTGTATGTTTGGAGGAGGAGGAGGAGGAGGAGGATCATTGAGAGAATTTGAGGAAGAAAGAAAAAGATGTCAGTGCTCTTACGTTTCTACTGATCAATCCCCAAATAAAGTGCTGGAGTTGCTCAAGGAACCCCTTTCAGCTCCATTTTGA

Coding sequence (CDS)

ATGGCTAAGCCTAATGTCTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACAAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAGCACAGTGAAGCTACTCTTGTATTGATTGATATGGTAGAAAGGTTGAGACCGATGAAGTGTATGTTTGGAGGAGGAGGAGGAGGAGGAGGATCATTGAGAGAATTTGAGGAAGAAAGAAAAAGATGTCAGTGCTCTTACGTTTCTACTGATCAATCCCCAAATAAAGTGCTGGAGTTGCTCAAGGAACCCCTTTCAGCTCCATTTTGA

Protein sequence

MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFGGGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF*

Homology

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BLAST of Csa7G452980 vs. TrEMBL
Match: A0A0A0K9S8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60
           MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60

Query: 61  GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 106
           GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF
Sbjct: 61  GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of Csa7G452980 vs. TrEMBL
Match: A0A068TRJ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021947001 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFGGGGG 64
           N CCSIELEP+TL QGQ+ +AREVA D++QK E +EA+ +L++ ++ +  +K M      
Sbjct: 3   NFCCSIELEPRTLRQGQIDQAREVAVDIMQKKEQNEASSILVEGLKPVASIKEMV-MAVQ 62

Query: 65  GGGSLREFEEERKR---------CQCSYVSTD-QSPNKVLELLKEPLSAPF 106
               L E +E + +         CQCS +ST   SPN+   LLKEP+SAPF
Sbjct: 63  EIDMLHEEDEAKDKIINSITETCCQCSSISTTIDSPNQ--SLLKEPVSAPF 110

[Close]

BLAST of Csa7G452980 vs. TrEMBL
Match: A0A061GIJ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028860 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLI------------DMVERL 64
           NVCCSIE EP+TLNQGQL+ ARE+AADV QKLE  EA+ +LI            ++ ++ 
Sbjct: 3   NVCCSIETEPRTLNQGQLNHAREMAADVAQKLEPREASAILIEGLITAAEIKEVELTDKE 62

Query: 65  RPMKCMFGGGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 106
           + ++C                E   +C C+ V +  + N +L  LKEP++APF
Sbjct: 63  KEVEC---------NQRAHITERPCQCSCNNVESPDT-NNILNNLKEPVTAPF 105

[Close]

BLAST of Csa7G452980 vs. TrEMBL
Match: W9REI8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026261 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 55/123 (44.72%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFGGGGG 64
           NVCCSIELEP+TL  GQL+ AREVAADVV+KL+  EAT++ I   E LRP          
Sbjct: 3   NVCCSIELEPRTLKGGQLNHAREVAADVVEKLKPHEATVMFI---EGLRPT--------- 62

Query: 65  GGGSLREF----EEERKR-----------------CQCS-YVSTDQSPNKVLELLKEPLS 106
             GS+++     EEE K                  CQCS  V T+ S +   + L+EPLS
Sbjct: 63  --GSIKKMKKITEEEEKEDHQVVGYMEKAKMIEIPCQCSCTVGTNISESTEQDKLREPLS 111

[Close]

BLAST of Csa7G452980 vs. TrEMBL
Match: M0ZRG1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400002533 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-10
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEAT----------------LVLIDM 64
           N CCSIE+EPKTL+QGQL+ AREVA D+VQ  +  EA+                LV+I+ 
Sbjct: 3   NFCCSIEMEPKTLSQGQLNLAREVAVDIVQNTQSDEASNLFLEGGKAVVQIKEALVVIEE 62

Query: 65  VERLRPMKCMFGGGGGGGGSLREFEEERKRCQCSYVS--TDQSPNKVLELLKEPLSAPF 106
            E +    C+       G +++        CQC+Y S  TD SP++     KEPLSAPF
Sbjct: 63  AESVVEEDCI-------GKAVKTNVMIEASCQCAYPSAITDDSPDQ--SKFKEPLSAPF 112

[Close]

BLAST of Csa7G452980 vs. NCBI nr
Match: gi|778730024|ref|XP_011659685.1| (PREDICTED: uncharacterized protein LOC105436221 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 3.9e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60
           MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60

Query: 61  GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 106
           GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF
Sbjct: 61  GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of Csa7G452980 vs. NCBI nr
Match: gi|659124971|ref|XP_008462443.1| (PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60
           MAKPNVCCSIELEPKTLNQGQLH+AREVAADVVQKLE SEA+LVLIDMVERL+PMK MF 
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  GGGGGGG-------SLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 106
            GG GGG       SL EFEEERKRCQCSYVSTDQSPNKVL+LLKEPLSAPF
Sbjct: 61  RGGVGGGESESESESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

[Close]

BLAST of Csa7G452980 vs. NCBI nr
Match: gi|743906660|ref|XP_011046755.1| (PREDICTED: uncharacterized protein LOC105141272 [Populus euphratica])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLID---MVERLRPMKCMFGG 64
           N+CCSIE+EP+TL +GQL  AREVAADV QK+E  EA+ V I+    V  ++    + G 
Sbjct: 3   NICCSIEMEPRTLREGQLSHAREVAADVAQKMEPEEASDVFINGLRPVVSIKETSQIEGN 62

Query: 65  GGGGGGSLREFEEER-----KRCQCSYVSTD-QSPNKVLELLKEPLSAPF 106
           G   G  + E +E+      + CQC+ +  D +SP+++   LKEPLSAPF
Sbjct: 63  GDRHGHKVAECKEKTAEIIDRPCQCTCIPKDIESPDQL--NLKEPLSAPF 110

[Close]

BLAST of Csa7G452980 vs. NCBI nr
Match: gi|661898021|emb|CDO97988.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-12
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFGGGGG 64
           N CCSIELEP+TL QGQ+ +AREVA D++QK E +EA+ +L++ ++ +  +K M      
Sbjct: 3   NFCCSIELEPRTLRQGQIDQAREVAVDIMQKKEQNEASSILVEGLKPVASIKEMV-MAVQ 62

Query: 65  GGGSLREFEEERKR---------CQCSYVSTD-QSPNKVLELLKEPLSAPF 106
               L E +E + +         CQCS +ST   SPN+   LLKEP+SAPF
Sbjct: 63  EIDMLHEEDEAKDKIINSITETCCQCSSISTTIDSPNQ--SLLKEPVSAPF 110

[Close]

BLAST of Csa7G452980 vs. NCBI nr
Match: gi|1009153336|ref|XP_015894583.1| (PREDICTED: uncharacterized protein LOC107428546 [Ziziphus jujuba])

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-12
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 6   VCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFGGGGGG 65
           +CCSIELEP+TLNQGQL+  REVAADVVQKLE  EA+ + ++ +  +   K M       
Sbjct: 4   ICCSIELEPRTLNQGQLNHVREVAADVVQKLEPHEASTLFVEGLRAVDSTKKM--EQKID 63

Query: 66  GGSLREFEEE----RKRCQCSYVSTDQSPNKVLELLKEPLSAPF 106
              + EF+E+     + CQC+ ++T+ S + V   LKEPLSAPF
Sbjct: 64  EEVVVEFKEKSELIERPCQCACLNTN-SESPVEHELKEPLSAPF 104

The following BLAST results are available for this feature:

BLAST of Csa7G452980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9S8_CUCSA	2.7e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452980 PE=4 SV=1	[more]
A0A068TRJ5_COFCA	5.2e-12	44.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021947001 PE=4 SV=1	[more]
A0A061GIJ0_THECC	1.2e-11	39.82	Uncharacterized protein OS=Theobroma cacao GN=TCM_028860 PE=4 SV=1	[more]
W9REI8_9ROSA	2.6e-11	44.72	Uncharacterized protein OS=Morus notabilis GN=L484_026261 PE=4 SV=1	[more]
M0ZRG1_SOLTU	3.7e-10	40.34	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400002533 PE=4 SV=1	[more]

BLAST of Csa7G452980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730024\|ref\|XP_011659685.1\|	3.9e-53	100.00	PREDICTED: uncharacterized protein LOC105436221 [Cucumis sativus]	[more]
gi\|659124971\|ref\|XP_008462443.1\|	2.8e-43	84.82	PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo]	[more]
gi\|743906660\|ref\|XP_011046755.1\|	3.3e-12	44.55	PREDICTED: uncharacterized protein LOC105141272 [Populus euphratica]	[more]
gi\|661898021\|emb\|CDO97988.1\|	7.5e-12	44.14	unnamed protein product [Coffea canephora]	[more]
gi\|1009153336\|ref\|XP_015894583.1\|	9.7e-12	47.12	PREDICTED: uncharacterized protein LOC107428546 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G452980.1	Csa7G452980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 5..105 score: 4.9
None	No IPR available	PANTHER	PTHR34808:SF1	SUBFAMILY NOT NAMED	coord: 5..105 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G452980	Cla000890	Watermelon (97103) v1	cuwmB551
Csa7G452980	MELO3C024449	Melon (DHL92) v3.5.1	cumeB521
Csa7G452980	ClCG09G000070	Watermelon (Charleston Gray)	cuwcgB524
Csa7G452980	Lsi02G030000	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G452980	MELO3C024449.2	Melon (DHL92) v3.6.1	cumedB501
Csa7G452980	Cla97C09G161930	Watermelon (97103) v2	cuwmbB570
Csa7G452980	Bhi09G000363	Wax gourd	cuwgoB710
Csa7G452980	CSPI07G23420	Wild cucumber (PI 183967)	cpicuB354
Csa7G452980	CmaCh17G007790	Cucurbita maxima (Rimu)	cmacuB383
Csa7G452980	CmoCh17G007470	Cucurbita moschata (Rifu)	cmocuB373
Csa7G452980	Cp4.1LG12g08320	Cucurbita pepo (Zucchini)	cpecuB156
Csa7G452980	CsGy7G021680	Cucumber (Gy14) v2	cgybcuB323
Csa7G452980	Carg09502	Silver-seed gourd	carcuB1040

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G452980	Cucurbita pepo (Zucchini)	cpecuB336
Csa7G452980	Silver-seed gourd	carcuB0761
Csa7G452980	Wax gourd	cuwgoB690
Csa7G452980	Cucumber (Gy14) v1	cgycuB508
Csa7G452980	Cucurbita maxima (Rimu)	cmacuB919
Csa7G452980	Cucurbita moschata (Rifu)	cmocuB905