Cla000890 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000890
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 20963235 .. 20964646 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGCCTAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGTCAACTCCACCAGGCTAGGGTCAGCCAATAAACCATTACAATATAACCCACTATTATCTTTTATTTTTATTTTTTAATAAATATATAATTTAATTTTTTTGTTTTTGGTTTTTTGGGTTTTGGTTCGGCAGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGTGAAACCTCTATTGTATCGATTGATGTACGTGTTTCTTTTGCTAACCCATATCTGATATCCTACTATTTTTCTAAATTATGACATATCTAATATCCTACTATTTTATTAATTATTAATATTTTTCCTAATTATGACATGTCTGAGAGAATTATTTTGTAATATTCAAAAGAATCATAAGTAATCATAGGTTGTAGAGTAATTTCAACATGATAAAAATGATCTTAATAATTTGAAAATCACTGTTAAAGATATATACCATGATTAATTACTTGGTGAAAGATTTTTTTTTTTCTCCCTTTAACTAGGAATCATTTGAGAATATAGTTATATTTTTGAGAGGGGCTCTTTGGTACTTCTATGACCCTAAAGTTGTAAAACTAAACCGTTTAAATTATTGGATTAGTTATTGATCTTTCAAAAGCGTTTAATATGTTTTTGAACTTTCATTCTTTTGTTTGCTAGGTCAATCAATTTATTAAAAATGTCCAATTAGTCCATAGAATTTGAATTTTGTGTATAATAAGTCATAACATATTAATTTTTTTTTAATATTACTGGATCTATTTAATATAAGTTAAATTTAAAATTAATGTATGATAGAATTCTAAACGTTCAATTATGTGTCTGATAAATCTGTTAGATTTAAAAAAAGGTCAAAAGTCTAATTAGACAAATTAAAATTGAAAAGTCCGGTCCTAGAACAAAACAAAAAGTTTGAGAACCAAATAGTCCTTTAAAAAAATTTAGGACTTTATTGGACACAACTTAGAAAATTCAAGAACTAAAATTGTAATTGAATCAATTATTAAAATAATTTATTATTCAACCTTTATTTATTATTATTTGATAGTATGTGGGGTGGGAGAATCTTCTAACAATTAAACTATCATGTATTAACATAAATACTCGTTTTAATTATGAACAAGTATTTATGTAGCTTTCTCGGTTATGTTTTTCCATTCTAATTAATATGAGATTTTAGATCGTGGAAAGATTCAAACCGATCAATTATATGTTTGAAAGAAGAGGAGAACCACAACCATTATTGCCACCGCCGCTACCACCACCACCGTCATTAGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTGCTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

mRNA sequence

ATGGCTAAGCCTAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGTCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGTGAAACCTCTATTGTATCGATTGATATCGTGGAAAGATTCAAACCGATCAATTATATGTTTGAAAGAAGAGGAGAACCACAACCATTATTGCCACCGCCGCTACCACCACCACCGTCATTAGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTGCTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

Coding sequence (CDS)

ATGGCTAAGCCTAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGTCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGTGAAACCTCTATTGTATCGATTGATATCGTGGAAAGATTCAAACCGATCAATTATATGTTTGAAAGAAGAGGAGAACCACAACCATTATTGCCACCGCCGCTACCACCACCACCGTCATTAGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTGCTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

Protein sequence

MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFERRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF

Homology

[Close]

BLAST of Cla000890 vs. TrEMBL
Match: A0A0A0K9S8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPNVCCSIELEPKTLNQGQLH+AREVAADVVQKLE SE ++V ID+VER +P+  MF 
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISA-ESPNQ-LQLVKEPLSAPF 114
             G              SL + +EER RCQCSY+S  +SPN+ L+L+KEPLSAPF
Sbjct: 61  GGG----------GGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of Cla000890 vs. TrEMBL
Match: D7U0D5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03760 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-13
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYM-- 60
           MAK  VCCSIE+EP+TLN+GQLH ARE A D+VQK+EP E S V  D + +   +  M  
Sbjct: 1   MAK--VCCSIEMEPRTLNEGQLHHAREAAVDIVQKMEPKEASNVFADGMRQVVTVKEMEQ 60

Query: 61  FERRGEPQPL--LPPPLPPPPSLGDIKEERGRCQCSYI--SAESPNQLQLVKEPLSAPF 114
            E+  E + L  L       P++G      G CQCS    + ESP+Q    +EPLSAPF
Sbjct: 61  LEQMAEKEQLEKLAECNETAPAIG------GPCQCSCFPTNLESPDQAG-PREPLSAPF 110

[Close]

BLAST of Cla000890 vs. TrEMBL
Match: A0A068TRJ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021947001 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-12
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFERRGE 64
           N CCSIELEP+TL QGQ+ QAREVA D++QK E +E S + ++ ++    I  M     E
Sbjct: 3   NFCCSIELEPRTLRQGQIDQAREVAVDIMQKKEQNEASSILVEGLKPVASIKEMVMAVQE 62

Query: 65  PQPLLPPPLPPPPSLGDIKEERGRCQCSYISA--ESPNQLQLVKEPLSAPF 114
              L          +  I E    CQCS IS   +SPNQ  L+KEP+SAPF
Sbjct: 63  IDMLHEEDEAKDKIINSITET--CCQCSSISTTIDSPNQ-SLLKEPVSAPF 110

[Close]

BLAST of Cla000890 vs. TrEMBL
Match: M5XAJ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020770mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 7   CCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFERRGEPQ 66
           CCSIELEP+TL++GQL+ ARE+AADVV+K+EP E S + I  +     +  M     E  
Sbjct: 5   CCSIELEPRTLSEGQLNHARELAADVVEKMEPEEASAIFIQGLRPVGSMKEMVHMVAEEG 64

Query: 67  PLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF 114
             L   +        ++    +C CS +  ESP+Q  L  EPLSAPF
Sbjct: 65  KQLQSKVVEWKEAQILETPPCQCLCSTVKIESPDQGTLT-EPLSAPF 110

[Close]

BLAST of Cla000890 vs. TrEMBL
Match: A0A061GIJ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028860 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-11
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSID---IVERFKPINYMFER 64
           NVCCSIE EP+TLNQGQL+ ARE+AADV QKLEP E S + I+        K +  + ++
Sbjct: 3   NVCCSIETEPRTLNQGQLNHAREMAADVAQKLEPREASAILIEGLITAAEIKEVE-LTDK 62

Query: 65  RGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESP---NQLQLVKEPLSAPF 114
             E +      +   P           CQCS  + ESP   N L  +KEP++APF
Sbjct: 63  EKEVECNQRAHITERP-----------CQCSCNNVESPDTNNILNNLKEPVTAPF 105

[Close]

BLAST of Cla000890 vs. NCBI nr
Match: gi|659124971|ref|XP_008462443.1| (PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 9.7e-34
Identity = 82/115 (71.30%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSE S+V ID+VER KP+ YMFE
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISA-ESPNQ-LQLVKEPLSAPF 114
           R G              SLG+ +EER RCQCSY+S  +SPN+ LQL+KEPLSAPF
Sbjct: 61  RGGVGG---GESESESESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

[Close]

BLAST of Cla000890 vs. NCBI nr
Match: gi|778730024|ref|XP_011659685.1| (PREDICTED: uncharacterized protein LOC105436221 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 7.9e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYMFE 60
           MAKPNVCCSIELEPKTLNQGQLH+AREVAADVVQKLE SE ++V ID+VER +P+  MF 
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60

Query: 61  RRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISA-ESPNQ-LQLVKEPLSAPF 114
             G              SL + +EER RCQCSY+S  +SPN+ L+L+KEPLSAPF
Sbjct: 61  GGG----------GGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of Cla000890 vs. NCBI nr
Match: gi|658036316|ref|XP_008353702.1| (PREDICTED: uncharacterized protein LOC103417291 [Malus domestica])

HSP 1 Score: 85.5 bits (210), Expect = 6.5e-14
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSID----IVERFKPIN 60
           MAK  VCCSIE EP+TL++GQL+ ARE+AADVV+K+EP+E S + I+    +++  K + 
Sbjct: 1   MAK--VCCSIETEPRTLSEGQLNHAREIAADVVEKMEPTEASAIFIEGLRPVLDSVKEMK 60

Query: 61  YMFERRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF 114
           +M +  GE Q  L   L        I E   +C CS    E+P+Q   + EP+SAPF
Sbjct: 61  HMTDEEGE-QLQLQTKLVEWKEEAQILEGPCQCLCSTAIVETPDQETRLTEPVSAPF 114

[Close]

BLAST of Cla000890 vs. NCBI nr
Match: gi|694316013|ref|XP_009378067.1| (PREDICTED: uncharacterized protein LOC103966606 [Pyrus x bretschneideri])

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSID----IVERFKPIN 60
           MAK  VCCSIE EP+TL++GQL+ ARE+AADVV+K+EP+E S + I+    ++   K + 
Sbjct: 1   MAK--VCCSIETEPRTLSEGQLNHAREMAADVVEKMEPTEASAIFIEGLRPVLGSVKEMK 60

Query: 61  YMFERRGEPQPLLPPPLPPPPSLGDIKEERGRCQCSYISAESPNQLQLVKEPLSAPF 114
           +M ++ GE Q  L   L        I E   +C CS    E+P+Q   + EP+SAPF
Sbjct: 61  HMTDKEGE-QLQLQTKLVEWKEEAQILEGPCQCLCSTAIVETPDQETRLTEPVSAPF 114

[Close]

BLAST of Cla000890 vs. NCBI nr
Match: gi|225442509|ref|XP_002284032.1| (PREDICTED: uncharacterized protein LOC100249817 [Vitis vinifera])

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-13
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSETSIVSIDIVERFKPINYM-- 60
           MAK  VCCSIE+EP+TLN+GQLH ARE A D+VQK+EP E S V  D + +   +  M  
Sbjct: 1   MAK--VCCSIEMEPRTLNEGQLHHAREAAVDIVQKMEPKEASNVFADGMRQVVTVKEMEQ 60

Query: 61  FERRGEPQPL--LPPPLPPPPSLGDIKEERGRCQCSYI--SAESPNQLQLVKEPLSAPF 114
            E+  E + L  L       P++G      G CQCS    + ESP+Q    +EPLSAPF
Sbjct: 61  LEQMAEKEQLEKLAECNETAPAIG------GPCQCSCFPTNLESPDQAG-PREPLSAPF 110

The following BLAST results are available for this feature:

BLAST of Cla000890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9S8_CUCSA	5.5e-28	63.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452980 PE=4 SV=1	[more]
D7U0D5_VITVI	6.5e-13	46.22	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03760 PE=4 SV=...	[more]
A0A068TRJ5_COFCA	5.5e-12	45.05	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021947001 PE=4 SV=1	[more]
M5XAJ5_PRUPE	1.6e-11	42.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020770mg PE=4 SV=1	[more]
A0A061GIJ0_THECC	3.6e-11	42.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_028860 PE=4 SV=1	[more]

BLAST of Cla000890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124971\|ref\|XP_008462443.1\|	9.7e-34	71.30	PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo]	[more]
gi\|778730024\|ref\|XP_011659685.1\|	7.9e-28	63.48	PREDICTED: uncharacterized protein LOC105436221 [Cucumis sativus]	[more]
gi\|658036316\|ref\|XP_008353702.1\|	6.5e-14	43.59	PREDICTED: uncharacterized protein LOC103417291 [Malus domestica]	[more]
gi\|694316013\|ref\|XP_009378067.1\|	1.9e-13	43.59	PREDICTED: uncharacterized protein LOC103966606 [Pyrus x bretschneideri]	[more]
gi\|225442509\|ref\|XP_002284032.1\|	9.4e-13	46.22	PREDICTED: uncharacterized protein LOC100249817 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000890	Cla000890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 5..113 score: 4.0
None	No IPR available	PANTHER	PTHR34808:SF1	SUBFAMILY NOT NAMED	coord: 5..113 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000890	Cla97C09G161930	Watermelon (97103) v2	wmwmbB006
Cla000890	Csa7G452980	Cucumber (Chinese Long) v2	cuwmB551
Cla000890	MELO3C024449	Melon (DHL92) v3.5.1	mewmB183
Cla000890	ClCG09G000070	Watermelon (Charleston Gray)	wcgwmB006
Cla000890	CSPI07G23420	Wild cucumber (PI 183967)	cpiwmB569
Cla000890	CmaCh17G007790	Cucurbita maxima (Rimu)	cmawmB327
Cla000890	CmoCh17G007470	Cucurbita moschata (Rifu)	cmowmB321
Cla000890	Lsi02G030000	Bottle gourd (USVL1VR-Ls)	lsiwmB169
Cla000890	Cp4.1LG12g08320	Cucurbita pepo (Zucchini)	cpewmB130
Cla000890	CsGy7G021680	Cucumber (Gy14) v2	cgybwmB514
Cla000890	MELO3C024449.2	Melon (DHL92) v3.6.1	medwmB180
Cla000890	Carg09502	Silver-seed gourd	carwmB1027
Cla000890	CsaV3_7G035400	Cucumber (Chinese Long) v3	cucwmB576
Cla000890	Bhi09G000363	Wax gourd	wgowmB578

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000890	Cucumber (Gy14) v1	cgywmB646
Cla000890	Wild cucumber (PI 183967)	cpiwmB182