CSPI07G23420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G23420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 19694769 .. 19695502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGCCTAATGTCTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACAAGGCTAGGGTCAGCCATCAACCCATTACAATAACAAAACGAACCCAAACCCTTATTTGTCCTAGCTTATTTTAATATTTTTTTTCTTTTTTCTTTTTTGGGTTTTGGTTTTTTCAGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAGCACAGTGAAGCTACTCTTGTATTGATTGATGTATGTGTTTCTCTTACCAACGATATATCTAATCTAATTGAAATATTATTGTTTTCTTATTTATGGTACGTAGGGTTTGGAAATGTTGAAATTATTTTTGTAATGTTGGAGAGCATTAGTCATATATATGTGGTTTTACGTTTTTAGATATGATTTTCTTAGAAGATAAAGATATATGGATACATACAATGTTAATAGAAATATAGTAATCGTTTAATTTGAATGTGTATAATTAATTTTGTGTGTTATTATTGAGAGGTTAGATGGTAGAAAGGTTGAGACCGATGAAGTGTATGTTTGAAAGAAGAGGAGGAGGAGGAGGAGAATCGTTGAGAGAATTTGAGGAAGAAAGAAAAAGATGTCAGTGCTCTTACGTTTCTACTGATCAATCCCCAAATAAAGTGCTGGAGTTGCTCAAGGAACCCCTTTCAGCTCCATTTTGAAGCTTTTTAACTTCTAATTTAATTACATCTCAAGTGGTATGT

mRNA sequence

ATGGCTAAGCCTAATGTCTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACAAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAGCACAGTGAAGCTACTCTTGTATTGATTGATATGGTAGAAAGGTTGAGACCGATGAAGTGTATGTTTGAAAGAAGAGGAGGAGGAGGAGGAGAATCGTTGAGAGAATTTGAGGAAGAAAGAAAAAGATGTCAGTGCTCTTACGTTTCTACTGATCAATCCCCAAATAAAGTGCTGGAGTTGCTCAAGGAACCCCTTTCAGCTCCATTTTGA

Coding sequence (CDS)

ATGGCTAAGCCTAATGTCTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACAAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAGCACAGTGAAGCTACTCTTGTATTGATTGATATGGTAGAAAGGTTGAGACCGATGAAGTGTATGTTTGAAAGAAGAGGAGGAGGAGGAGGAGAATCGTTGAGAGAATTTGAGGAAGAAAGAAAAAGATGTCAGTGCTCTTACGTTTCTACTGATCAATCCCCAAATAAAGTGCTGGAGTTGCTCAAGGAACCCCTTTCAGCTCCATTTTGA

Homology

[Close]

BLAST of CSPI07G23420 vs. TrEMBL
Match: A0A0A0K9S8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-49
Identity = 102/106 (96.23%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFE 60
           MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMF 
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMF- 60

Query: 61  RRGGGGGESLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 107
             GGGGG SLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF
Sbjct: 61  GGGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of CSPI07G23420 vs. TrEMBL
Match: A0A068TRJ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021947001 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-13
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFERRGG 64
           N CCSIELEP+TL QGQ+ +AREVA D++QK E +EA+ +L   VE L+P+  + E    
Sbjct: 3   NFCCSIELEPRTLRQGQIDQAREVAVDIMQKKEQNEASSIL---VEGLKPVASIKEMVMA 62

Query: 65  GGGESLREFEEERKR----------CQCSYVSTD-QSPNKVLELLKEPLSAPF 107
                +   E+E K           CQCS +ST   SPN+   LLKEP+SAPF
Sbjct: 63  VQEIDMLHEEDEAKDKIINSITETCCQCSSISTTIDSPNQ--SLLKEPVSAPF 110

[Close]

BLAST of CSPI07G23420 vs. TrEMBL
Match: A0A061GIJ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028860 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-12
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFERRGG 64
           NVCCSIE EP+TLNQGQL+ ARE+AADV QKLE  EA+ +LI+ +     +K +      
Sbjct: 3   NVCCSIETEPRTLNQGQLNHAREMAADVAQKLEPREASAILIEGLITAAEIKEVELTDKE 62

Query: 65  GGGESLREFEEERKRCQCSYVSTDQ-SPNKVLELLKEPLSAPF 107
              E  +      + CQCS  + +    N +L  LKEP++APF
Sbjct: 63  KEVECNQRAHITERPCQCSCNNVESPDTNNILNNLKEPVTAPF 105

[Close]

BLAST of CSPI07G23420 vs. TrEMBL
Match: W9REI8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026261 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVE---RLRPMKCMFER 64
           NVCCSIELEP+TL  GQL+ AREVAADVV+KL+  EAT++ I+ +     ++ MK + E 
Sbjct: 3   NVCCSIELEPRTLKGGQLNHAREVAADVVEKLKPHEATVMFIEGLRPTGSIKKMKKITEE 62

Query: 65  RGGGGGESLREFEEERK---RCQCS-YVSTDQSPNKVLELLKEPLSAPF 107
                 + +   E+ +     CQCS  V T+ S +   + L+EPLSAPF
Sbjct: 63  EEKEDHQVVGYMEKAKMIEIPCQCSCTVGTNISESTEQDKLREPLSAPF 111

[Close]

BLAST of CSPI07G23420 vs. TrEMBL
Match: D7U0D5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03760 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFE 60
           MAK  VCCSIE+EP+TLN+GQLH ARE A D+VQK+E  EA+ V  D + ++  +K M +
Sbjct: 1   MAK--VCCSIEMEPRTLNEGQLHHAREAAVDIVQKMEPKEASNVFADGMRQVVTVKEMEQ 60

Query: 61  RRGGGGGESLREFEEERKR-------CQCSYVSTD-QSPNKVLELLKEPLSAPF 107
                  E L +  E  +        CQCS   T+ +SP++     +EPLSAPF
Sbjct: 61  LEQMAEKEQLEKLAECNETAPAIGGPCQCSCFPTNLESPDQAGP--REPLSAPF 110

[Close]

BLAST of CSPI07G23420 vs. NCBI nr
Match: gi|778730024|ref|XP_011659685.1| (PREDICTED: uncharacterized protein LOC105436221 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-49
Identity = 102/106 (96.23%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFE 60
           MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMF 
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMF- 60

Query: 61  RRGGGGGESLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 107
             GGGGG SLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF
Sbjct: 61  GGGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of CSPI07G23420 vs. NCBI nr
Match: gi|659124971|ref|XP_008462443.1| (PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 8.8e-45
Identity = 97/112 (86.61%), Postives = 101/112 (90.18%), Query Frame = 1


Query: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFE 60
           MAKPNVCCSIELEPKTLNQGQLH+AREVAADVVQKLE SEA+LVLIDMVERL+PMK MFE
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  RRGGGGG------ESLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 107
           R G GGG      ESL EFEEERKRCQCSYVSTDQSPNKVL+LLKEPLSAPF
Sbjct: 61  RGGVGGGESESESESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

[Close]

BLAST of CSPI07G23420 vs. NCBI nr
Match: gi|1009153336|ref|XP_015894583.1| (PREDICTED: uncharacterized protein LOC107428546 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 6   VCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFERRGGG 65
           +CCSIELEP+TLNQGQL+  REVAADVVQKLE  EA+ + ++ +  +   K M ++    
Sbjct: 4   ICCSIELEPRTLNQGQLNHVREVAADVVQKLEPHEASTLFVEGLRAVDSTKKMEQKI--- 63

Query: 66  GGESLREFEEE----RKRCQCSYVSTDQSPNKVLELLKEPLSAPF 107
             E + EF+E+     + CQC+ ++T+ S + V   LKEPLSAPF
Sbjct: 64  DEEVVVEFKEKSELIERPCQCACLNTN-SESPVEHELKEPLSAPF 104

[Close]

BLAST of CSPI07G23420 vs. NCBI nr
Match: gi|661898021|emb|CDO97988.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFERRGG 64
           N CCSIELEP+TL QGQ+ +AREVA D++QK E +EA+ +L   VE L+P+  + E    
Sbjct: 3   NFCCSIELEPRTLRQGQIDQAREVAVDIMQKKEQNEASSIL---VEGLKPVASIKEMVMA 62

Query: 65  GGGESLREFEEERKR----------CQCSYVSTD-QSPNKVLELLKEPLSAPF 107
                +   E+E K           CQCS +ST   SPN+   LLKEP+SAPF
Sbjct: 63  VQEIDMLHEEDEAKDKIINSITETCCQCSSISTTIDSPNQ--SLLKEPVSAPF 110

[Close]

BLAST of CSPI07G23420 vs. NCBI nr
Match: gi|743906660|ref|XP_011046755.1| (PREDICTED: uncharacterized protein LOC105141272 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 5   NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMK--CMFERR 64
           N+CCSIE+EP+TL +GQL  AREVAADV QK+E  EA+ V I+ +  +  +K     E  
Sbjct: 3   NICCSIEMEPRTLREGQLSHAREVAADVAQKMEPEEASDVFINGLRPVVSIKETSQIEGN 62

Query: 65  GGGGGESLREFEEER-----KRCQCSYVSTD-QSPNKVLELLKEPLSAPF 107
           G   G  + E +E+      + CQC+ +  D +SP+++   LKEPLSAPF
Sbjct: 63  GDRHGHKVAECKEKTAEIIDRPCQCTCIPKDIESPDQL--NLKEPLSAPF 110

The following BLAST results are available for this feature:

BLAST of CSPI07G23420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G23420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9S8_CUCSA	3.1e-49	96.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452980 PE=4 SV=1	[more]
A0A068TRJ5_COFCA	8.1e-13	46.02	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021947001 PE=4 SV=1	[more]
A0A061GIJ0_THECC	4.0e-12	44.66	Uncharacterized protein OS=Theobroma cacao GN=TCM_028860 PE=4 SV=1	[more]
W9REI8_9ROSA	8.9e-12	44.95	Uncharacterized protein OS=Morus notabilis GN=L484_026261 PE=4 SV=1	[more]
D7U0D5_VITVI	1.2e-11	43.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03760 PE=4 SV=...	[more]

BLAST of CSPI07G23420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G23420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730024\|ref\|XP_011659685.1\|	4.5e-49	96.23	PREDICTED: uncharacterized protein LOC105436221 [Cucumis sativus]	[more]
gi\|659124971\|ref\|XP_008462443.1\|	8.8e-45	86.61	PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo]	[more]
gi\|1009153336\|ref\|XP_015894583.1\|	2.3e-13	47.62	PREDICTED: uncharacterized protein LOC107428546 [Ziziphus jujuba]	[more]
gi\|661898021\|emb\|CDO97988.1\|	1.2e-12	46.02	unnamed protein product [Coffea canephora]	[more]
gi\|743906660\|ref\|XP_011046755.1\|	2.0e-12	44.55	PREDICTED: uncharacterized protein LOC105141272 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G23420.1	CSPI07G23420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 5..106 score: 1.3
None	No IPR available	PANTHER	PTHR34808:SF1	SUBFAMILY NOT NAMED	coord: 5..106 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G23420	Cla000890	Watermelon (97103) v1	cpiwmB569
CSPI07G23420	Csa7G452980	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G23420	MELO3C024449	Melon (DHL92) v3.5.1	cpimeB525
CSPI07G23420	ClCG09G000070	Watermelon (Charleston Gray)	cpiwcgB553
CSPI07G23420	Lsi02G030000	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G23420	MELO3C024449.2	Melon (DHL92) v3.6.1	cpimedB512
CSPI07G23420	CsaV3_7G035400	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G23420	Cla97C09G161930	Watermelon (97103) v2	cpiwmbB596
CSPI07G23420	Bhi09G000363	Wax gourd	cpiwgoB721
CSPI07G23420	CmaCh17G007790	Cucurbita maxima (Rimu)	cmacpiB387
CSPI07G23420	CmoCh17G007470	Cucurbita moschata (Rifu)	cmocpiB376
CSPI07G23420	Cp4.1LG12g08320	Cucurbita pepo (Zucchini)	cpecpiB158
CSPI07G23420	CsGy7G021680	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G23420	Carg09502	Silver-seed gourd	carcpiB1063

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G23420	Silver-seed gourd	carcpiB0778
CSPI07G23420	Cucumber (Gy14) v1	cgycpiB535
CSPI07G23420	Cucurbita maxima (Rimu)	cmacpiB939
CSPI07G23420	Cucurbita moschata (Rifu)	cmocpiB918
CSPI07G23420	Cucurbita pepo (Zucchini)	cpecpiB337