Carg09502 (gene) Silver-seed gourd

NameCarg09502
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMannose-6-phosphate isomerase
LocationCucurbita_argyrosperma_scaffold_029 : 542065 .. 543499 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCTGCTGTGGGCGCTGTTGCAGAGTTTGTAGCTACTCATCTTTAGCCTATGGCTAAGCCTAATGCTCGTTGCTCCATTGAAATGGAGCCCAGAACCTTGAAGCAAGGCCAACTCCACCAAGCTAGGGTCAGCCAAAAACCCTTTGAAATCCATACCCTTTTGTGGCTATTGGCTTTTGAAGCTTTGTTTTAATGGAGTCTGATTGTTCTGCAGGAAGTTGCTGCTGATGTTGTTCAAAAACTGGAACCCACTGAAGCTTCTCTTCTATTGATTGATGTATGTTTTTCTTTGCAACTCATCTAATATCTCGTTTATTGTTGTTAAAATCAAATGATATCGATGTTCCCGACAAAATTGTGGGGAAATATAATGATCCAAGGATCGTATGGTTCTTCGACAACTTAGGCTAAATTAATAAAAATGCCGTTGAATTTTGTATTTATTATTTTAAAACTTTAAAAAAAATTTAATAATGAGGTTCCAAAAAAAATCCATAAAATATCATTAATGTTAGTATTCTATTTCAAAAACACTGTTAACTTTAATTATTATTATTATTTTTTAATAATACCCTTCATTTTTTTTCAACTTTTTTTTAAAAAGTTCAAAAATACCGCTGTTATTATGTTAAAATAATACCCATAAAATTTTAAAAAAATCATTTTATAGATATATATTTTTTTAAATACTCAGATAATTTTTAAGTACTTTTGAAAGTTAAAAGAGTATTTTTTAATAGTTTTTTTTAAGTTAAAAGTGTATTTTTGAAACAAAATATTAAATATGCAGATTTAAAATTATGGATTTTTTAACTTTAAAAAAAAAAAAGTTTAAAAGGTATCTTTAGATTTTAGGAATTTTTTTTTAGGTAAAATTCAAAAGCATTTTTATTAATTTAAATATGTTAAATTATAAATTTAATTATGAAATGTTTGAATTTTATTTAGTTTGTCTCTAAATTTTAATAAATATTATGTCAAATAAATTCTAAATTTTTAATTTTATATTTAATAGTTGATATTTTTTAAATTTGTAAAATTTAATCTATTAGAATATACCAATAAAATCGAGAACTAAACTAGCATGTACTTTAACTAATTAAAAATATTAAAATGATTTGTTCCAACTGATATGAGTATACAGATCGTAGAACGACTCAAACCGATGAACCATATAATTGAAAGAGGAGAGTTGCCATTGTTGCCGCCGTTGTCGTCGCCGTTGTCGTCGGCGGCGGCGGCCGGGCCACCGCCACCGCCATTTGTGGGGGATTATAATGAAGAAAGAGGAAGATGCCAATGCTCTTACATTTGTATTGAATCCCCAAATCAATTGCAGCTGCTTAAGGAACCCCTTTCAGCTCCTTTTTAGATTAGATGCTTTGGACTATCATTTATGAGCTCTCCCAATATAATTTAATTAATTTAGACATA

mRNA sequence

CTGCTGCTGTGGGCGCTGTTGCAGAGTTTGTAGCTACTCATCTTTAGCCTATGGCTAAGCCTAATGCTCGTTGCTCCATTGAAATGGAGCCCAGAACCTTGAAGCAAGGCCAACTCCACCAAGCTAGGGAAGTTGCTGCTGATGTTGTTCAAAAACTGGAACCCACTGAAGCTTCTCTTCTATTGATTGATATCGTAGAACGACTCAAACCGATGAACCATATAATTGAAAGAGGAGAGTTGCCATTGTTGCCGCCGTTGTCGTCGCCGTTGTCGTCGGCGGCGGCGGCCGGGCCACCGCCACCGCCATTTGTGGGGGATTATAATGAAGAAAGAGGAAGATGCCAATGCTCTTACATTTGTATTGAATCCCCAAATCAATTGCAGCTGCTTAAGGAACCCCTTTCAGCTCCTTTTTAGATTAGATGCTTTGGACTATCATTTATGAGCTCTCCCAATATAATTTAATTAATTTAGACATA

Coding sequence (CDS)

ATGGCTAAGCCTAATGCTCGTTGCTCCATTGAAATGGAGCCCAGAACCTTGAAGCAAGGCCAACTCCACCAAGCTAGGGAAGTTGCTGCTGATGTTGTTCAAAAACTGGAACCCACTGAAGCTTCTCTTCTATTGATTGATATCGTAGAACGACTCAAACCGATGAACCATATAATTGAAAGAGGAGAGTTGCCATTGTTGCCGCCGTTGTCGTCGCCGTTGTCGTCGGCGGCGGCGGCCGGGCCACCGCCACCGCCATTTGTGGGGGATTATAATGAAGAAAGAGGAAGATGCCAATGCTCTTACATTTGTATTGAATCCCCAAATCAATTGCAGCTGCTTAAGGAACCCCTTTCAGCTCCTTTTTAG

Protein sequence

MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIERGELPLLPPLSSPLSSAAAAGPPPPPFVGDYNEERGRCQCSYICIESPNQLQLLKEPLSAPF
BLAST of Carg09502 vs. NCBI nr
Match: XP_022954046.1 (uncharacterized protein LOC111456424 [Cucurbita moschata])

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE
Sbjct: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQLQLLKEPLSA 120
           RGELPLLPPLS  XXXXXXXXXXXXXFVGDYNEE GRCQCSYICIESPNQLQLLKEPLSA
Sbjct: 61  RGELPLLPPLS-SXXXXXXXXXXXXXFVGDYNEESGRCQCSYICIESPNQLQLLKEPLSA 120

Query: 121 PF 123
           PF
Sbjct: 121 PF 121

BLAST of Carg09502 vs. NCBI nr
Match: XP_023521779.1 (uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.1 uncharacterized protein LOC111807614 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 103/122 (84.43%), Postives = 104/122 (85.25%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAKPNARCSIEMEPRTL QGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNH+IE
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHMIE 60

Query: 61  RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQLQLLKEPLSA 120
           RGELPLLPPLS               FVGDY EERGRCQCSYI IESPNQLQLLKEPLSA
Sbjct: 61  RGELPLLPPLS--SPLSSAAGPPAPPFVGDYKEERGRCQCSYISIESPNQLQLLKEPLSA 120

Query: 121 PF 123
           PF
Sbjct: 121 PF 120

BLAST of Carg09502 vs. NCBI nr
Match: XP_022992446.1 (uncharacterized protein LOC111488747 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 117/123 (95.12%), Postives = 117/123 (95.12%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAKPNARCSIEMEPRTL QGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  -RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQLQLLKEPLS 120
             GELPLLPPL XXXXXXXXXXXXXXX VGDY EERGRCQCSYICIESPNQLQLLKEPLS
Sbjct: 61  GGGELPLLPPL-XXXXXXXXXXXXXXXXVGDYKEERGRCQCSYICIESPNQLQLLKEPLS 120

Query: 121 APF 123
           APF
Sbjct: 121 APF 122

BLAST of Carg09502 vs. NCBI nr
Match: XP_022152180.1 (uncharacterized protein LOC111019960 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 5.0e-24
Identity = 69/122 (56.56%), Postives = 79/122 (64.75%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAK    CSIE+EP+TL  GQL++AREVAADVVQKLEP EAS + ID+VER K +N  IE
Sbjct: 1   MAKAKICCSIELEPKTLNHGQLYRAREVAADVVQKLEPEEASAVXIDVVERFKTVNQTIE 60

Query: 61  RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQLQLLKEPLSA 120
            GE P  P                   + DY E R RCQCS +  ESPNQ+QLLKEPLSA
Sbjct: 61  SGE-PSRP-------------------LQDYVEGRERCQCSCLPTESPNQMQLLKEPLSA 102

Query: 121 PF 123
           PF
Sbjct: 121 PF 102

BLAST of Carg09502 vs. NCBI nr
Match: XP_008462443.1 (PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 8.8e-21
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAKPN  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+EASL+LID+VERLKPM ++ E
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQ-LQLLKEPLS 120
           RG +       XXXXXXXXXXXXXXX     + +           +SPN+ LQLLKEPLS
Sbjct: 61  RGGVXXXXXXXXXXXXXXXXXXXXXXXXXYVSTD-----------QSPNKVLQLLKEPLS 112

Query: 121 APF 123
           APF
Sbjct: 121 APF 112

BLAST of Carg09502 vs. TrEMBL
Match: tr|A0A1S3CH00|A0A1S3CH00_CUCME (uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.8e-21
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAKPN  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+EASL+LID+VERLKPM ++ E
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQ-LQLLKEPLS 120
           RG +       XXXXXXXXXXXXXXX     + +           +SPN+ LQLLKEPLS
Sbjct: 61  RGGVXXXXXXXXXXXXXXXXXXXXXXXXXYVSTD-----------QSPNKVLQLLKEPLS 112

Query: 121 APF 123
           APF
Sbjct: 121 APF 112

BLAST of Carg09502 vs. TrEMBL
Match: tr|A0A0A0K9S8|A0A0A0K9S8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.3e-19
Identity = 69/124 (55.65%), Postives = 82/124 (66.13%), Query Frame = 0

Query: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60
           MAKPN  CSIE+EP+TL QGQLH+AREVAADVVQKLE +EA+L+LID+VERL+PM  +  
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMF- 60

Query: 61  RGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICI-ESPNQ-LQLLKEPL 120
                              XXXXXXX           CQCSY+   +SPN+ L+LLKEPL
Sbjct: 61  ------------------GXXXXXXXXXXXXXXXXXXCQCSYVSTDQSPNKVLELLKEPL 105

Query: 121 SAPF 123
           SAPF
Sbjct: 121 SAPF 105

BLAST of Carg09502 vs. TrEMBL
Match: tr|A0A2I4G5G0|A0A2I4G5G0_9ROSI (uncharacterized protein LOC109004886 OS=Juglans regia OX=51240 GN=LOC109004886 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.3e-11
Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 0

Query: 5   NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPM--------- 64
           N  CSIEMEP+TL QGQL++AREVAADV QK+EP EAS++ ID     +P+         
Sbjct: 4   NICCSIEMEPKTLNQGQLNRAREVAADVAQKMEPNEASIVFIDQGSSSRPLVPGNDIDAD 63

Query: 65  --NHIIERGELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGR-CQCS----YICIESP 123
               ++E G+  L  P+                         GR CQCS     I +ESP
Sbjct: 64  DQRKVLEEGKQLLYKPVECEETKT--------------TRIMGRPCQCSCIATMISVESP 122

BLAST of Carg09502 vs. TrEMBL
Match: tr|A0A2K2C011|A0A2K2C011_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G188400v3 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 51/118 (43.22%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 5   NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIERGEL 64
           N  CSIEMEPRTL++GQL  AREVAADV QK+EP EAS + I+    L+P+  I E  + 
Sbjct: 3   NICCSIEMEPRTLREGQLSHAREVAADVAQKMEPEEASDVFIN---GLRPVVSIKEMSQ- 62

Query: 65  PLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYICIESPNQLQLLKEPLSAPF 123
                +                   +  +   +C C    IESP+QL  LKEPLSAPF
Sbjct: 63  -----IEGNGDRHDHKVVECKEKTAEIIDRPCQCSCIPKDIESPDQLN-LKEPLSAPF 110

BLAST of Carg09502 vs. TrEMBL
Match: tr|A0A068TRJ5|A0A068TRJ5_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021947001 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-10
Identity = 56/124 (45.16%), Postives = 68/124 (54.84%), Query Frame = 0

Query: 5   NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIER--- 64
           N  CSIE+EPRTL+QGQ+ QAREVA D++QK E  EAS +L   VE LKP+  I E    
Sbjct: 3   NFCCSIELEPRTLRQGQIDQAREVAVDIMQKKEQNEASSIL---VEGLKPVASIKEMVMA 62

Query: 65  -GELPLLPPLSXXXXXXXXXXXXXXXFVGDYNEERGRCQCSYI--CIESPNQLQLLKEPL 123
             E+ +L                    +    E    CQCS I   I+SPNQ  LLKEP+
Sbjct: 63  VQEIDML----------HEEDEAKDKIINSITET--CCQCSSISTTIDSPNQ-SLLKEPV 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954046.12.0e-4997.54uncharacterized protein LOC111456424 [Cucurbita moschata][more]
XP_023521779.12.5e-4784.43uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.... [more]
XP_022992446.13.0e-4595.12uncharacterized protein LOC111488747 [Cucurbita maxima][more]
XP_022152180.15.0e-2456.56uncharacterized protein LOC111019960 [Momordica charantia][more]
XP_008462443.18.8e-2165.04PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CH00|A0A1S3CH00_CUCME5.8e-2165.04uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=... [more]
tr|A0A0A0K9S8|A0A0A0K9S8_CUCSA9.3e-1955.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1[more]
tr|A0A2I4G5G0|A0A2I4G5G0_9ROSI9.3e-1140.30uncharacterized protein LOC109004886 OS=Juglans regia OX=51240 GN=LOC109004886 P... [more]
tr|A0A2K2C011|A0A2K2C011_POPTR1.6e-1043.22Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G188400v3 PE=... [more]
tr|A0A068TRJ5|A0A068TRJ5_COFCA3.6e-1045.16Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021947001 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09502-RACarg09502-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808:SF1SUBFAMILY NOT NAMEDcoord: 5..122
NoneNo IPR availablePANTHERPTHR34808FAMILY NOT NAMEDcoord: 5..122

The following gene(s) are paralogous to this gene:

None