Csa7G393980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G393980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 14979699 .. 14980109 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGATAGCATACAAGAAGCAAAATCAGAAGCTTTGGCACGACCGCAGTCGAATTCAAGGACAACGATGAATGATATAAGCTCGGCGCGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCACCAAAAGTCCCATAAGATCCAATCCACCACCACCATCATCATCAGAGCAACAAAGCTTCCCCATGAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGTCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAATAAAGAAACAAACATTAATTGTGTCGATGTTAATACATCACCTCAAAGGAGGGCCCCATATGACAATGGTAGACTTTATAAAAGTCTCATACT

mRNA sequence

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGATAGCATACAAGAAGCAAAATCAGAAGCTTTGGCACGACCGCAGTCGAATTCAAGGACAACGATGAATGATATAAGCTCGGCGCGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCACCAAAAGTCCCATAAGATCCAATCCACCACCACCATCATCATCAGAGCAACAAAGCTTCCCCATGAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGTCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

Coding sequence (CDS)

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGATAGCATACAAGAAGCAAAATCAGAAGCTTTGGCACGACCGCAGTCGAATTCAAGGACAACGATGAATGATATAAGCTCGGCGCGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCACCAAAAGTCCCATAAGATCCAATCCACCACCACCATCATCATCAGAGCAACAAAGCTTCCCCATGAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGTCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

Protein sequence

MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQKSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN*
Homology
[Close]
BLAST of Csa7G393980 vs. TrEMBL
Match: A0A0A0K5W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G393980 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.3e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60
           MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ
Sbjct: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60

Query: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 106
           KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN
Sbjct: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 105

[Close]
BLAST of Csa7G393980 vs. NCBI nr
Match: gi|700189645|gb|KGN44878.1| (hypothetical protein Csa_7G393980 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60
           MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ
Sbjct: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60

Query: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 106
           KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN
Sbjct: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 105

The following BLAST results are available for this feature:
BLAST of Csa7G393980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5W1_CUCSA3.3e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G393980 PE=4 SV=1[more]
BLAST of Csa7G393980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189645|gb|KGN44878.1|4.8e-51100.00hypothetical protein Csa_7G393980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125260cucumber EST collection version 3.0transcribed_cluster
CU166622cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G393980.1Csa7G393980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU166622CU166622transcribed_cluster
CU125260CU125260transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G393980MELO3C015899Melon (DHL92) v3.5.1cumeB522
Csa7G393980ClCG09G006440Watermelon (Charleston Gray)cuwcgB526
Csa7G393980MELO3C015899.2Melon (DHL92) v3.6.1cumedB507
Csa7G393980CSPI07G16950Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G393980Silver-seed gourdcarcuB0119
Csa7G393980Silver-seed gourdcarcuB0876
Csa7G393980Watermelon (97103) v2cuwmbB572
Csa7G393980Wax gourdcuwgoB653
Csa7G393980Cucumber (Gy14) v1cgycuB519
Csa7G393980Cucurbita maxima (Rimu)cmacuB388
Csa7G393980Cucurbita maxima (Rimu)cmacuB914
Csa7G393980Cucurbita moschata (Rifu)cmocuB378
Csa7G393980Cucurbita moschata (Rifu)cmocuB900
Csa7G393980Watermelon (97103) v1cuwmB568
Csa7G393980Cucurbita pepo (Zucchini)cpecuB161
Csa7G393980Cucurbita pepo (Zucchini)cpecuB343
Csa7G393980Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G393980Cucumber (Gy14) v2cgybcuB323