MELO3C015899.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015899.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 31619862 .. 31620191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGAAAGATTGACAGCATACAAGAAGCAAAAATCAGAAGCTTTGGGACGACCGGAGTTGAATTCAAGGCCAACGATGAATGATATAAGCTCGGCGTGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCATCAAAAGTCCCATAAGATCCAATCCTCCACCACCATCATCATCATTAGAGCAACAAAGCTTCCCCATCAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGCCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

mRNA sequence

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGAAAGATTGACAGCATACAAGAAGCAAAAATCAGAAGCTTTGGGACGACCGGAGTTGAATTCAAGGCCAACGATGAATGATATAAGCTCGGCGTGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCATCAAAAGTCCCATAAGATCCAATCCTCCACCACCATCATCATCATTAGAGCAACAAAGCTTCCCCATCAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGCCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

Coding sequence (CDS)

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGAAAGATTGACAGCATACAAGAAGCAAAAATCAGAAGCTTTGGGACGACCGGAGTTGAATTCAAGGCCAACGATGAATGATATAAGCTCGGCGTGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCATCAAAAGTCCCATAAGATCCAATCCTCCACCACCATCATCATCATTAGAGCAACAAAGCTTCCCCATCAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGCCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

Protein sequence

MIFPKEGIHLQRKIERLTAYKKQKSEALGRPELNSRPTMNDISSAWLRLADDHESESYNNGHQKSHKIQSSTTIIIIRATKLPHQIYRKERTFFPTKPQIEPLESISSN

Homology

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BLAST of MELO3C015899.2 vs. NCBI nr
Match: KGN44878.1 (hypothetical protein Csa_7G393980 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MIFPKEGIHLQRKIERLTAYKKQKSEALGRPELNSRPTMNDISSAWLRLADDHESESYNN 60
           MIFPKEGIHLQRKI+ +   ++ KSEAL RP+ NSR TMNDISSA LRLADDHESESYNN
Sbjct: 1   MIFPKEGIHLQRKIDSI---QEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNN 60

Query: 61  GHQKSHKIQSSTTIIIIRATKLPHQIYRKERTFFPTKPQIEPLESISSN 110
           GHQKSHKIQS+TT IIIRATKLPH+IYRKERTFFPTK QIEPLESISSN
Sbjct: 61  GHQKSHKIQSTTT-IIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 105

[Close]

BLAST of MELO3C015899.2 vs. TrEMBL
Match: tr|A0A0A0K5W1|A0A0A0K5W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G393980 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-39
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MIFPKEGIHLQRKIERLTAYKKQKSEALGRPELNSRPTMNDISSAWLRLADDHESESYNN 60
           MIFPKEGIHLQRKI+ +   ++ KSEAL RP+ NSR TMNDISSA LRLADDHESESYNN
Sbjct: 1   MIFPKEGIHLQRKIDSI---QEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNN 60

Query: 61  GHQKSHKIQSSTTIIIIRATKLPHQIYRKERTFFPTKPQIEPLESISSN 110
           GHQKSHKIQS+TT IIIRATKLPH+IYRKERTFFPTK QIEPLESISSN
Sbjct: 61  GHQKSHKIQSTTT-IIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 105

The following BLAST results are available for this feature:

BLAST of MELO3C015899.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44878.1	2.9e-39	83.49	hypothetical protein Csa_7G393980 [Cucumis sativus]	[more]

BLAST of MELO3C015899.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015899.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015899.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5W1\|A0A0A0K5W1_CUCSA	1.9e-39	83.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G393980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015899.2.1	MELO3C015899.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015899.2	Csa7G393980	Cucumber (Chinese Long) v2	cumedB507
MELO3C015899.2	CSPI07G16950	Wild cucumber (PI 183967)	cpimedB519
MELO3C015899.2	ClCG09G006440	Watermelon (Charleston Gray)	medwcgB170
MELO3C015899.2	CsaV3_7G028710	Cucumber (Chinese Long) v3	cucmedB534

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015899.2	Cucumber (Gy14) v2	cgybmedB463
MELO3C015899.2	Cucurbita maxima (Rimu)	cmamedB380
MELO3C015899.2	Cucurbita maxima (Rimu)	cmamedB923
MELO3C015899.2	Cucurbita moschata (Rifu)	cmomedB366
MELO3C015899.2	Cucurbita moschata (Rifu)	cmomedB912
MELO3C015899.2	Cucurbita pepo (Zucchini)	cpemedB151
MELO3C015899.2	Cucurbita pepo (Zucchini)	cpemedB348
MELO3C015899.2	Cucurbita pepo (Zucchini)	cpemedB350
MELO3C015899.2	Cucurbita pepo (Zucchini)	cpemedB598
MELO3C015899.2	Bottle gourd (USVL1VR-Ls)	lsimedB195
MELO3C015899.2	Watermelon (97103) v1	medwmB195
MELO3C015899.2	Silver-seed gourd	carmedB0115
MELO3C015899.2	Silver-seed gourd	carmedB0860
MELO3C015899.2	Watermelon (97103) v2	medwmbB182
MELO3C015899.2	Watermelon (97103) v2	medwmbB208
MELO3C015899.2	Wax gourd	medwgoB255