Csa7G393980.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G393980.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 14979699 .. 14980109 (-)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGATAGCATACAAGAAGCAAAATCAGAAGCTTTGGCACGACCGCAGTCGAATTCAAGGACAACGATGAATGATATAAGCTCGGCGCGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCACCAAAAGTCCCATAAGATCCAATCCACCACCACCATCATCATCAGAGCAACAAAGCTTCCCCATGAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGTCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAATAAAGAAACAAACATTAATTGTGTCGATGTTAATACATCACCTCAAAGGAGGGCCCCATATGACAATGGTAGACTTTATAAAAGTCTCATACT

mRNA sequence

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGATAGCATACAAGAAGCAAAATCAGAAGCTTTGGCACGACCGCAGTCGAATTCAAGGACAACGATGAATGATATAAGCTCGGCGCGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCACCAAAAGTCCCATAAGATCCAATCCACCACCACCATCATCATCAGAGCAACAAAGCTTCCCCATGAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGTCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

Coding sequence (CDS)

ATGATTTTCCCAAAAGAAGGTATTCATCTACAAAGAAAGATTGATAGCATACAAGAAGCAAAATCAGAAGCTTTGGCACGACCGCAGTCGAATTCAAGGACAACGATGAATGATATAAGCTCGGCGCGGTTGAGGCTGGCAGATGACCATGAGAGTGAGAGCTATAACAATGGCCACCAAAAGTCCCATAAGATCCAATCCACCACCACCATCATCATCAGAGCAACAAAGCTTCCCCATGAAATTTACAGAAAAGAAAGAACTTTCTTCCCAACAAAGTCTCAAATTGAGCCTCTTGAATCAATTTCTTCTAATTAA

Protein sequence

MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQKSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN*
Homology
[Close]
BLAST of Csa7G393980.1 vs. TrEMBL
Match: A0A0A0K5W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G393980 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.3e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60
           MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ
Sbjct: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60

Query: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 106
           KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN
Sbjct: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 105

[Close]
BLAST of Csa7G393980.1 vs. NCBI nr
Match: gi|700189645|gb|KGN44878.1| (hypothetical protein Csa_7G393980 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60
           MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ
Sbjct: 1   MIFPKEGIHLQRKIDSIQEAKSEALARPQSNSRTTMNDISSARLRLADDHESESYNNGHQ 60

Query: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 106
           KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN
Sbjct: 61  KSHKIQSTTTIIIRATKLPHEIYRKERTFFPTKSQIEPLESISSN 105

The following BLAST results are available for this feature:
BLAST of Csa7G393980.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5W1_CUCSA3.3e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G393980 PE=4 SV=1[more]
BLAST of Csa7G393980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189645|gb|KGN44878.1|4.8e-51100.00hypothetical protein Csa_7G393980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G393980Csa7G393980gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G393980.1Csa7G393980.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G393980.1.utr3p1Csa7G393980.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G393980.1.cds1Csa7G393980.1.cds1CDS